Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47289 * 2 1 4 4 C 1.53001 * 109.46893 * 240.00540 * 2 1 3 5 5 N 1.46496 * 109.47262 * 185.00008 * 4 2 1 6 6 C 1.36942 * 120.00241 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99632 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00117 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00064 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47117 * 59.99967 * 10 8 6 12 12 H 1.48499 * 109.46977 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46749 * 299.99896 * 10 8 6 14 14 N 1.46493 * 109.47058 * 120.00681 * 2 1 3 15 15 C 1.46497 * 120.00164 * 59.99927 * 14 2 1 16 16 C 1.34781 * 120.00100 * 239.99786 * 14 2 1 17 17 O 1.21284 * 119.99537 * 359.97438 * 16 14 2 18 18 C 1.50691 * 120.00190 * 180.02562 * 16 14 2 19 19 H 1.09012 * 109.47383 * 59.99990 * 18 16 14 20 20 C 1.53002 * 109.47186 * 299.99817 * 18 16 14 21 21 N 1.46500 * 109.47278 * 179.97438 * 18 16 14 22 22 C 1.34781 * 120.00115 * 205.00068 * 21 18 16 23 23 O 1.21284 * 120.00039 * 0.02562 * 22 21 18 24 24 C 1.50695 * 119.99873 * 180.02562 * 22 21 18 25 25 N 1.46498 * 109.47144 * 179.97438 * 24 22 21 26 26 C 1.34604 * 126.43686 * 124.99851 * 25 24 22 27 27 N 1.31071 * 106.67536 * 179.97438 * 26 25 24 28 28 N 1.28838 * 107.99475 * 0.02562 * 27 26 25 29 29 N 1.28738 * 109.39735 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46924 * 300.00113 * 1 2 3 32 32 H 1.09003 * 109.47420 * 59.98959 * 1 2 3 33 33 H 1.09005 * 109.47153 * 305.00256 * 4 2 1 34 34 H 1.09003 * 109.47419 * 65.00063 * 4 2 1 35 35 H 0.96996 * 120.00226 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00275 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47139 * 269.99957 * 15 14 2 38 38 H 1.09002 * 109.47175 * 29.99602 * 15 14 2 39 39 H 1.08996 * 109.47468 * 149.99979 * 15 14 2 40 40 H 1.09003 * 109.46928 * 179.97438 * 20 18 16 41 41 H 1.08996 * 109.47143 * 300.00080 * 20 18 16 42 42 H 1.09004 * 109.46701 * 60.00211 * 20 18 16 43 43 H 0.97000 * 120.00109 * 25.00038 * 21 18 16 44 44 H 1.09004 * 109.47418 * 59.99565 * 24 22 21 45 45 H 1.09005 * 109.47395 * 299.99974 * 24 22 21 46 46 H 1.07999 * 126.66312 * 359.71827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2070 7 1 3.6465 -1.8438 -3.0519 8 6 5.5670 -1.5388 -2.1512 9 7 6.2215 -1.0456 -1.1213 10 14 6.4997 -2.3736 -3.5378 11 1 6.2432 -1.6533 -4.8108 12 1 7.9545 -2.3496 -3.2406 13 1 6.0430 -3.7809 -3.6646 14 7 2.0183 -0.6907 1.1960 15 6 1.6644 -2.0933 1.4277 16 6 2.7932 -0.0358 2.0833 17 8 3.0866 1.1252 1.8912 18 6 3.2960 -0.7465 3.3133 19 1 3.9018 -1.6027 3.0162 20 6 2.1063 -1.2279 4.1463 21 7 4.1103 0.1740 4.1106 22 6 5.0540 -0.3091 4.9428 23 8 5.2294 -1.5059 5.0313 24 6 5.8913 0.6378 5.7634 25 7 6.8358 -0.1281 6.5803 26 6 8.1733 0.0216 6.6079 27 7 8.6322 -0.8552 7.4673 28 7 7.6291 -1.5096 7.9424 29 7 6.5421 -1.0726 7.4087 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 1.6053 -1.7197 -1.2954 34 1 1.7516 -0.1581 -2.1370 35 1 3.9824 -0.4622 -0.4321 36 1 7.1882 -1.1159 -1.0821 37 1 0.7376 -2.1445 1.9991 38 1 1.5294 -2.5969 0.4705 39 1 2.4628 -2.5821 1.9860 40 1 2.4700 -1.7424 5.0358 41 1 1.5006 -0.3718 4.4434 42 1 1.5008 -1.9130 3.5528 43 1 3.9704 1.1312 4.0396 44 1 5.2432 1.2261 6.4132 45 1 6.4419 1.3045 5.0996 46 1 8.7556 0.7244 6.0306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568309570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = 83.766991 kcal Electronic energy + Delta-G solvation = -30250.927105 eV Core-core repulsion = 26022.235231 eV Total energy + Delta-G solvation = -4228.691874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.29887 -40.68183 -39.52564 -36.73066 -35.75861 -35.11086 -34.16712 -32.65128 -32.41687 -30.91764 -30.05118 -28.88258 -26.97699 -25.74436 -24.77233 -23.97451 -23.55616 -22.65121 -21.34752 -20.61322 -19.20249 -18.34543 -18.03200 -17.18381 -17.02717 -16.66595 -16.24231 -16.05594 -15.66046 -15.45320 -15.16844 -14.68216 -14.23930 -14.07099 -13.69422 -13.64630 -13.35451 -13.28766 -12.83431 -12.62544 -12.59663 -12.37626 -12.29383 -12.26929 -12.20588 -11.80952 -11.58123 -11.49724 -11.35185 -11.27193 -10.89534 -10.81904 -10.58862 -10.55975 -10.17635 -10.13712 -9.76331 -9.72295 -9.36068 -8.92765 -8.45994 -6.97474 -5.80245 -3.09718 1.06222 1.59864 2.15679 2.15874 2.58835 2.70747 3.21677 3.40516 3.45036 3.46336 3.88524 4.05396 4.19634 4.34926 4.39266 4.55219 4.61562 4.90779 5.03121 5.11675 5.19370 5.24700 5.29968 5.39833 5.46061 5.50834 5.53034 5.55625 5.64961 5.76872 5.85163 5.90261 5.96696 6.00888 6.06621 6.09786 6.25457 6.39514 6.60866 6.80982 7.10968 7.48709 7.63951 7.80676 8.23277 8.37412 8.47998 9.49246 10.06338 10.41358 11.41833 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.003308 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.551198 B = 8462.141184 C =10624.249782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.142 3.858 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.069 0.931 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.588 5.588 15 C 0.074 3.926 16 C 0.519 3.481 17 O -0.539 6.539 18 C 0.129 3.871 19 H 0.119 0.881 20 C -0.170 4.170 21 N -0.700 5.700 22 C 0.506 3.494 23 O -0.508 6.508 24 C 0.097 3.903 25 N -0.300 5.300 26 C 0.164 3.836 27 N -0.308 5.308 28 N -0.080 5.080 29 N -0.064 5.064 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.029 0.971 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.412 0.588 44 H 0.137 0.863 45 H 0.148 0.852 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 6.593 13.254 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.014 3.986 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.087 0.913 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.320 5.320 15 C -0.069 4.069 16 C 0.305 3.695 17 O -0.417 6.417 18 C 0.021 3.979 19 H 0.137 0.863 20 C -0.228 4.228 21 N -0.355 5.355 22 C 0.288 3.712 23 O -0.382 6.382 24 C -0.028 4.028 25 N -0.102 5.102 26 C -0.135 4.135 27 N -0.155 5.155 28 N -0.074 5.074 29 N -0.051 5.051 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.249 0.751 44 H 0.155 0.845 45 H 0.166 0.834 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -9.081 5.187 13.998 17.473 hybrid contribution 0.710 0.838 -1.580 1.924 sum -8.371 6.026 12.418 16.143 Atomic orbital electron populations 1.22051 0.94917 1.02203 1.02122 1.21444 0.93394 0.98489 0.84401 0.88095 1.21018 0.87165 0.96841 0.93584 1.42272 0.99616 1.70171 1.25172 1.19154 0.89425 1.29675 0.99186 0.91301 1.24731 0.96430 1.01512 0.98020 1.69661 1.07236 1.50695 1.30230 0.86284 0.79047 0.79281 0.81647 1.21260 1.21687 1.21263 1.47544 1.49968 1.12279 1.22169 1.21965 1.00027 0.81804 1.03108 1.20289 0.78111 0.86943 0.84128 1.90675 1.57409 1.17013 1.76561 1.20773 0.93882 0.93487 0.89756 0.86310 1.22383 0.96980 1.02332 1.01137 1.45475 1.36364 1.11322 1.42308 1.20044 0.80831 0.89430 0.80886 1.90870 1.67383 1.15119 1.64785 1.21973 0.92906 0.93065 0.94897 1.48132 1.07870 1.25250 1.28960 1.27787 0.82482 1.02205 1.01026 1.74990 1.23772 1.06210 1.10536 1.78658 0.91085 1.18897 1.18802 1.78984 1.22629 1.00653 1.02816 0.92284 0.92628 0.91304 0.96066 0.95293 0.78101 0.93523 0.92519 0.90018 0.90885 0.90871 0.91907 0.89640 0.75134 0.84528 0.83442 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.19 37.16 0.34 -1.38 16 2 C 0.13 1.92 2.80 -67.93 -0.19 1.73 16 3 H 0.10 1.77 6.90 -51.93 -0.36 1.41 16 4 C 0.14 2.68 5.50 -4.04 -0.02 2.66 16 5 N -0.73 -17.97 5.43 -59.91 -0.33 -18.30 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 N -0.59 -8.51 2.24 -173.94 -0.39 -8.90 16 15 C 0.07 0.87 7.86 59.85 0.47 1.34 16 16 C 0.52 7.93 6.85 -10.99 -0.08 7.86 16 17 O -0.54 -9.63 15.17 5.55 0.08 -9.55 16 18 C 0.13 1.65 2.18 -69.09 -0.15 1.50 16 19 H 0.12 1.82 6.84 -51.92 -0.36 1.46 16 20 C -0.17 -1.67 9.12 37.16 0.34 -1.33 16 21 N -0.70 -7.61 4.95 -54.93 -0.27 -7.89 16 22 C 0.51 5.74 7.81 -10.99 -0.09 5.66 16 23 O -0.51 -8.25 15.36 5.55 0.09 -8.16 16 24 C 0.10 0.64 6.96 -5.20 -0.04 0.60 16 25 N -0.30 -3.13 3.19 -63.74 -0.20 -3.34 16 26 C 0.16 1.55 12.79 -90.38 -1.16 0.39 16 27 N -0.31 -4.21 12.36 29.59 0.37 -3.85 16 28 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 29 N -0.06 -0.92 12.29 60.35 0.74 -0.18 16 30 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.38 10.29 7.07 -40.82 -0.29 10.00 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 37 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 38 H 0.08 1.05 6.53 -51.93 -0.34 0.71 16 39 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.74 4.53 -51.93 -0.24 0.50 16 43 H 0.41 3.70 7.79 -40.82 -0.32 3.39 16 44 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.15 0.40 8.08 -51.93 -0.42 -0.02 16 46 H 0.24 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -39.79 383.21 -4.69 -44.48 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.25 Total: 8.57 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -0.81 Total: 11.81 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: 1.45 Total: -70.22 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.79 -4.69 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568309570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.242 kcal (2) G-P(sol) polarization free energy of solvation -39.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds