Wall clock time and date at job start Sat Apr 11 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47179 * 2 1 4 4 C 1.50697 * 109.47253 * 120.00351 * 2 1 3 5 5 H 1.08007 * 119.99887 * 119.99834 * 4 2 1 6 6 C 1.37873 * 120.00237 * 300.00534 * 4 2 1 7 7 N 1.31520 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00070 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47657 * 89.99430 * 8 6 4 10 10 H 1.48496 * 109.47180 * 209.99590 * 8 6 4 11 11 H 1.48503 * 109.47226 * 329.99396 * 8 6 4 12 12 O 1.45203 * 109.47013 * 240.00858 * 2 1 3 13 13 C 1.34229 * 117.00394 * 89.99631 * 12 2 1 14 14 O 1.20829 * 119.99873 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00104 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.43419 * 61.09208 * 15 13 12 17 17 C 1.54888 * 110.48586 * 298.54855 * 15 13 12 18 18 C 1.54897 * 102.74764 * 203.37969 * 17 15 13 19 19 H 1.09000 * 110.48216 * 279.26347 * 18 17 15 20 20 N 1.46495 * 110.48460 * 156.62621 * 18 17 15 21 21 C 1.34769 * 120.00623 * 86.45299 * 20 18 17 22 22 O 1.21516 * 119.99733 * 0.02562 * 21 20 18 23 23 O 1.34641 * 120.00568 * 179.97438 * 21 20 18 24 24 C 1.45196 * 117.00165 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.47345 * 60.00134 * 24 23 21 26 26 C 1.53002 * 109.46853 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.47019 * 299.99878 * 24 23 21 28 28 C 1.54264 * 104.19493 * 37.94423 * 18 17 15 29 29 H 1.09000 * 117.41471 * 116.37063 * 28 18 17 30 30 C 1.53003 * 118.19739 * 272.21225 * 28 18 17 31 31 C 1.53001 * 60.37830 * 93.61522 * 30 28 18 32 32 H 1.09000 * 119.29513 * 112.24431 * 31 30 28 33 33 H 1.09002 * 109.46881 * 59.98983 * 1 2 3 34 34 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46697 * 299.99809 * 1 2 3 36 36 H 0.96993 * 119.99908 * 180.02562 * 7 6 4 37 37 H 1.08999 * 110.75516 * 85.06839 * 17 15 13 38 38 H 1.09001 * 110.75836 * 321.69199 * 17 15 13 39 39 H 0.97008 * 119.99629 * 266.45017 * 20 18 17 40 40 H 1.08997 * 109.46990 * 59.99815 * 25 24 23 41 41 H 1.08998 * 109.47243 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.46811 * 300.00145 * 25 24 23 43 43 H 1.08996 * 109.47295 * 59.99816 * 26 24 23 44 44 H 1.08998 * 109.46815 * 180.02562 * 26 24 23 45 45 H 1.09006 * 109.47014 * 299.99631 * 26 24 23 46 46 H 1.08997 * 109.46862 * 60.00607 * 27 24 23 47 47 H 1.08998 * 109.46756 * 179.97438 * 27 24 23 48 48 H 1.08996 * 109.47335 * 300.00311 * 27 24 23 49 49 H 1.08997 * 117.46223 * 346.01644 * 30 28 18 50 50 H 1.08999 * 117.44055 * 201.22832 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8299 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5444 4.4118 10 1 1.3446 -0.9495 5.1121 11 1 2.4881 -2.5657 3.7119 12 8 2.0140 -0.6843 -1.1857 13 6 2.2171 0.0642 -2.2812 14 8 1.9981 1.2521 -2.2503 15 6 2.7192 -0.5767 -3.5493 16 1 2.0119 -1.3271 -3.9024 17 6 4.1136 -1.2111 -3.3207 18 6 4.7090 -1.2522 -4.7501 19 1 4.3235 -2.1112 -5.2992 20 7 6.1723 -1.2919 -4.6950 21 6 6.8106 -2.4730 -4.5775 22 8 6.1722 -3.5052 -4.5177 23 8 8.1556 -2.5095 -4.5274 24 6 8.7753 -3.8165 -4.4010 25 6 8.3849 -4.6841 -5.5992 26 6 10.2965 -3.6577 -4.3597 27 6 8.2976 -4.4847 -3.1102 28 6 4.2284 0.0628 -5.3979 29 1 4.9897 0.7875 -5.6866 30 6 2.8697 0.0678 -6.1014 31 6 2.9633 0.4923 -4.6344 32 1 2.7732 1.5316 -4.3668 33 1 -0.3633 0.5140 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 0.7094 1.1614 3.4845 37 1 4.0180 -2.2175 -2.9130 38 1 4.7207 -0.5845 -2.6673 39 1 6.6820 -0.4679 -4.7431 40 1 8.7253 -4.2080 -6.5188 41 1 8.8506 -5.6650 -5.5046 42 1 7.3012 -4.7971 -5.6282 43 1 10.5743 -3.0397 -3.5059 44 1 10.7617 -4.6388 -4.2653 45 1 10.6372 -3.1814 -5.2791 46 1 7.2139 -4.5979 -3.1393 47 1 8.7625 -5.4661 -3.0156 48 1 8.5757 -3.8667 -2.2566 49 1 2.4118 -0.8976 -6.3171 50 1 2.6895 0.8486 -6.8402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646845769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:04 Heat of formation + Delta-G solvation = -170.121081 kcal Electronic energy + Delta-G solvation = -30349.701738 eV Core-core repulsion = 26148.955292 eV Total energy + Delta-G solvation = -4200.746446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07000 -41.55179 -40.24099 -38.16938 -37.50476 -35.63014 -35.37062 -34.67821 -32.83846 -31.51228 -29.02488 -28.33395 -28.26577 -27.48907 -24.84438 -23.95407 -23.19111 -22.16508 -21.66550 -20.98656 -20.44722 -19.11996 -19.03375 -18.45008 -17.87813 -17.35531 -17.17180 -16.99613 -16.62773 -16.01436 -15.80910 -15.39262 -15.29074 -15.16819 -14.72775 -14.43672 -14.38516 -14.08981 -13.85335 -13.64237 -13.32477 -13.20840 -13.04646 -13.00785 -12.89157 -12.86531 -12.83516 -12.72485 -12.53830 -12.44629 -12.40223 -12.29238 -12.18205 -11.89506 -11.62610 -11.39641 -11.34266 -11.33122 -11.06592 -11.01505 -10.74708 -10.63101 -10.22389 -8.31815 -6.48767 1.10733 1.31654 1.39015 1.40980 1.52743 1.76156 1.97071 2.38594 2.56811 2.98574 3.09884 3.23741 3.59918 3.77875 3.82740 3.86724 3.94974 3.97569 4.04774 4.11421 4.20422 4.28240 4.42822 4.48741 4.53715 4.58227 4.64568 4.73980 4.75426 4.79468 4.80674 4.86575 4.90701 4.90935 4.95572 4.97972 5.09559 5.14691 5.16407 5.26493 5.31574 5.34423 5.42436 5.45890 5.60042 5.60405 5.89455 6.06640 6.40447 6.56325 6.94212 7.23383 7.34932 8.75995 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.002976 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.618993 B = 9405.793938 C =11699.382992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.982 3.018 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.264 1.264 12 O -0.363 6.363 13 C 0.456 3.544 14 O -0.549 6.549 15 C -0.051 4.051 16 H 0.131 0.869 17 C -0.118 4.118 18 C 0.200 3.800 19 H 0.106 0.894 20 N -0.692 5.692 21 C 0.647 3.353 22 O -0.589 6.589 23 O -0.369 6.369 24 C 0.125 3.875 25 C -0.178 4.178 26 C -0.136 4.136 27 C -0.184 4.184 28 C -0.160 4.160 29 H 0.142 0.858 30 C -0.113 4.113 31 C -0.173 4.173 32 H 0.112 0.888 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.272 0.728 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.418 0.582 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.055 0.945 49 H 0.111 0.889 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.515 -7.552 -20.337 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.804 3.196 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.188 1.188 12 O -0.279 6.279 13 C 0.300 3.700 14 O -0.440 6.440 15 C -0.070 4.070 16 H 0.149 0.851 17 C -0.157 4.157 18 C 0.096 3.904 19 H 0.124 0.876 20 N -0.351 5.351 21 C 0.400 3.600 22 O -0.479 6.479 23 O -0.284 6.284 24 C 0.089 3.911 25 C -0.235 4.235 26 C -0.193 4.193 27 C -0.241 4.241 28 C -0.179 4.179 29 H 0.159 0.841 30 C -0.149 4.149 31 C -0.191 4.191 32 H 0.130 0.870 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.255 0.745 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.129 0.871 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.130 -7.655 -20.099 26.296 hybrid contribution -0.025 0.524 1.404 1.499 sum 15.105 -7.131 -18.695 25.070 Atomic orbital electron populations 1.21981 0.96673 1.00410 1.00896 1.20327 0.92078 0.91943 0.79221 0.97607 1.21285 1.33444 1.13874 0.90087 0.91748 1.25824 0.94673 0.95685 1.02101 1.70012 1.36500 1.23608 1.25266 0.85201 0.78234 0.78897 0.77218 1.19672 1.19763 1.18818 1.86491 1.76040 1.43837 1.21573 1.24165 0.73566 0.85701 0.86523 1.90551 1.50039 1.18368 1.85058 1.21406 0.98897 0.98463 0.88219 0.85081 1.22996 0.93036 1.01252 0.98386 1.21210 0.76845 0.98543 0.93836 0.87636 1.44587 1.06755 1.06968 1.76817 1.18257 0.81348 0.84520 0.75848 1.90909 1.67650 1.33075 1.56308 1.86307 1.18856 1.37176 1.86023 1.22404 0.93904 0.78531 0.96247 1.22460 1.03505 1.00674 0.96867 1.21886 0.89261 1.04467 1.03663 1.22506 1.03241 1.02035 0.96321 1.23441 0.92335 0.97592 1.04512 0.84055 1.23278 0.95279 1.04544 0.91848 1.23027 1.04973 0.99027 0.92100 0.86985 0.95663 0.93561 0.90006 0.91916 0.90407 0.91844 0.74527 0.91529 0.89221 0.91827 0.91585 0.88017 0.90792 0.92032 0.89063 0.92542 0.87055 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 2 C 0.22 12.31 2.56 29.85 0.08 12.39 16 3 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 4 C -0.55 -32.09 8.90 25.60 0.23 -31.86 16 5 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16 8 Si 0.98 43.72 29.54 68.60 2.03 45.75 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 12 O -0.36 -18.10 9.84 -51.41 -0.51 -18.61 16 13 C 0.46 19.57 7.23 71.24 0.52 20.08 16 14 O -0.55 -26.67 14.74 21.96 0.32 -26.35 16 15 C -0.05 -1.49 3.16 -10.47 -0.03 -1.53 16 16 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 17 C -0.12 -3.31 5.97 31.89 0.19 -3.12 16 18 C 0.20 4.14 2.95 46.07 0.14 4.28 16 19 H 0.11 2.20 7.67 -2.39 -0.02 2.19 16 20 N -0.69 -13.88 5.18 -565.00 -2.93 -16.81 16 21 C 0.65 15.88 8.05 129.79 1.05 16.93 16 22 O -0.59 -17.32 11.59 19.79 0.23 -17.09 16 23 O -0.37 -8.12 9.94 -55.50 -0.55 -8.67 16 24 C 0.13 2.27 1.13 -10.79 -0.01 2.26 16 25 C -0.18 -2.99 8.37 71.98 0.60 -2.38 16 26 C -0.14 -1.60 8.85 71.98 0.64 -0.96 16 27 C -0.18 -3.69 8.37 71.98 0.60 -3.09 16 28 C -0.16 -2.71 6.52 -10.07 -0.07 -2.77 16 29 H 0.14 1.82 8.02 -2.39 -0.02 1.80 16 30 C -0.11 -1.66 10.07 30.60 0.31 -1.35 16 31 C -0.17 -4.10 6.20 -10.07 -0.06 -4.16 16 32 H 0.11 3.21 7.06 -2.39 -0.02 3.19 16 33 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 4.61 6.07 -2.39 -0.01 4.60 16 36 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 39 H 0.42 6.41 8.63 -92.70 -0.80 5.61 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.43 5.88 -2.38 -0.01 1.41 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 50 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -73.40 402.83 4.27 -69.13 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.14 Total: 26.53 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.29 Total: -0.72 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -2.69 Total: -69.97 kcal Atomic # 8 Polarization: -70.22 SS G_CDS: -0.50 Total: -70.72 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.40 4.27 -69.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646845769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.989 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds