Wall clock time and date at job start Sat Apr 11 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 N 1.29437 * 124.80409 * 90.02146 * 5 4 2 7 7 C 1.30943 * 117.36295 * 179.97438 * 6 5 4 8 8 C 1.35656 * 114.19185 * 0.02562 * 7 6 5 9 9 C 1.46690 * 126.13138 * 180.02562 * 8 7 6 10 10 O 1.21681 * 120.00227 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99647 * 359.97272 * 9 8 7 12 12 C 1.46491 * 119.99678 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47395 * 34.99949 * 12 11 9 14 14 C 1.53004 * 109.47081 * 275.00071 * 12 11 9 15 15 C 1.52997 * 109.47148 * 155.00636 * 12 11 9 16 16 C 1.53007 * 109.46594 * 294.99682 * 15 12 11 17 17 C 1.53006 * 109.47147 * 180.02562 * 16 15 12 18 18 N 1.46497 * 109.47191 * 180.02562 * 17 16 15 19 19 C 1.36939 * 119.99869 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00000 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99672 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00339 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99671 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47056 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46982 * 120.00362 * 23 21 19 26 26 H 1.48506 * 109.46780 * 240.00020 * 23 21 19 27 27 S 1.70949 * 124.80396 * 269.72222 * 5 4 2 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 36 36 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 37 37 H 1.07996 * 122.90064 * 180.02562 * 7 6 5 38 38 H 0.96999 * 119.99690 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47098 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.46906 * 300.00177 * 14 12 11 41 41 H 1.08997 * 109.47126 * 60.00325 * 14 12 11 42 42 H 1.09000 * 109.47836 * 54.99472 * 15 12 11 43 43 H 1.08999 * 109.47612 * 174.99962 * 15 12 11 44 44 H 1.09003 * 109.47319 * 299.99800 * 16 15 12 45 45 H 1.09000 * 109.47167 * 60.00339 * 16 15 12 46 46 H 1.09003 * 109.46781 * 300.00047 * 17 16 15 47 47 H 1.09000 * 109.46877 * 60.00080 * 17 16 15 48 48 H 0.96998 * 119.99743 * 359.97438 * 18 17 16 49 49 H 0.96997 * 120.00429 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 7 0.5380 -2.6568 -1.6623 7 6 0.3396 -3.9444 -1.5305 8 6 1.3458 -4.6002 -0.9000 9 6 1.3960 -6.0383 -0.6151 10 8 2.3585 -6.5115 -0.0404 11 7 0.3760 -6.8355 -0.9900 12 6 0.4259 -8.2716 -0.7050 13 1 0.9266 -8.4355 0.2492 14 6 1.1990 -8.9854 -1.8158 15 6 -0.9978 -8.8276 -0.6363 16 6 -1.7318 -8.2043 0.5528 17 6 -3.1554 -8.7608 0.6220 18 7 -3.8583 -8.1635 1.7601 19 6 -5.1558 -8.5132 2.0235 20 1 -5.6610 -9.2290 1.3920 21 6 -5.8217 -7.9476 3.1022 22 7 -5.2062 -7.0749 3.8715 23 14 -7.5919 -8.4241 3.4612 24 1 -8.0516 -9.4147 2.4549 25 1 -7.6787 -9.0198 4.8186 26 1 -8.4529 -7.2159 3.3948 27 16 2.5857 -3.4163 -0.4919 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6055 -0.2618 -2.1370 36 1 3.1264 -0.6443 -1.2951 37 1 -0.5484 -4.4411 -1.8925 38 1 -0.3911 -6.4583 -1.4485 39 1 1.2357 -10.0540 -1.6040 40 1 0.6984 -8.8215 -2.7700 41 1 2.2133 -8.5893 -1.8649 42 1 -1.5275 -8.5855 -1.5576 43 1 -0.9596 -9.9099 -0.5128 44 1 -1.2022 -8.4464 1.4742 45 1 -1.7700 -7.1220 0.4293 46 1 -3.6852 -8.5190 -0.2994 47 1 -3.1167 -9.8430 0.7457 48 1 -3.4044 -7.5209 2.3275 49 1 -5.6714 -6.6799 4.6255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649475697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:12 Heat of formation + Delta-G solvation = -13.146322 kcal Electronic energy + Delta-G solvation = -26379.040102 eV Core-core repulsion = 22660.146215 eV Total energy + Delta-G solvation = -3718.893887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48979 -39.52104 -36.86581 -36.64544 -34.85807 -32.82238 -31.79267 -30.63159 -29.41966 -28.31968 -27.43507 -25.68973 -24.75135 -23.21716 -22.32702 -21.04054 -20.81774 -20.64439 -19.91201 -18.29885 -17.51250 -17.01091 -16.27696 -15.59629 -15.41690 -15.07150 -14.82792 -14.64162 -14.59791 -14.23569 -14.07551 -13.84674 -13.65040 -13.43586 -13.01346 -12.82612 -12.71324 -12.59421 -12.25807 -12.22772 -12.13021 -11.79831 -11.50729 -11.33629 -11.26835 -11.19539 -11.09804 -10.87235 -10.81765 -10.55901 -10.43349 -10.37896 -9.98400 -9.77593 -9.71037 -9.68306 -9.28975 -9.09190 -8.86423 -6.90616 -5.75196 -3.03987 -0.01498 0.88050 1.41005 2.21312 3.01968 3.07981 3.43795 3.49012 3.51613 3.68905 4.39468 4.45261 4.49051 4.55986 4.61723 4.75455 4.90592 4.94020 5.01356 5.11979 5.12766 5.19537 5.32486 5.39839 5.40382 5.52410 5.54333 5.58263 5.59973 5.60419 5.71688 5.75574 5.80797 5.92935 5.94223 6.04061 6.08518 6.08960 6.18643 6.34684 6.39258 6.40523 6.86196 6.89530 7.28034 7.34460 7.71153 7.99556 8.43738 9.54585 10.13625 10.47793 11.47824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.002527 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.836107 B =11078.221757 C =13709.071927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.043 4.043 5 C 0.047 3.953 6 N -0.473 5.473 7 C 0.097 3.903 8 C -0.297 4.297 9 C 0.597 3.403 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.143 3.857 13 H 0.092 0.908 14 C -0.162 4.162 15 C -0.123 4.123 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 S 0.223 5.777 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.181 0.819 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.552 11.928 -14.528 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.084 4.084 5 C -0.227 4.227 6 N -0.187 5.187 7 C -0.062 4.062 8 C -0.421 4.421 9 C 0.382 3.618 10 O -0.416 6.416 11 N -0.359 5.359 12 C 0.039 3.961 13 H 0.110 0.890 14 C -0.221 4.221 15 C -0.161 4.161 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 S 0.481 5.519 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.198 0.802 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.731 11.832 -13.880 27.612 hybrid contribution -2.203 -0.351 -0.085 2.233 sum 18.527 11.482 -13.965 25.887 Atomic orbital electron populations 1.21859 0.94106 1.02757 1.01853 1.21148 0.97109 0.96252 0.96666 1.21829 1.00933 0.95198 1.02395 1.20486 1.01409 0.85660 1.00833 1.27541 0.93838 1.02001 0.99343 1.66149 1.19219 1.12638 1.20675 1.22205 0.98834 0.88531 0.96658 1.25768 1.02045 0.99939 1.14361 1.16682 0.83070 0.83543 0.78536 1.90839 1.32913 1.75808 1.42021 1.45852 1.21317 1.08699 1.60067 1.21116 0.97121 0.78277 0.99604 0.89034 1.22180 1.00604 1.00727 0.98569 1.21865 0.93294 1.01292 0.99696 1.21746 0.96858 1.00386 0.97444 1.20646 0.89902 0.95593 0.91322 1.42390 1.12241 1.51791 1.31452 1.19286 0.88822 1.19849 1.09050 0.91154 1.24759 0.98491 0.99656 0.98259 1.69671 1.36550 1.32620 1.19374 0.86116 0.84794 0.77549 0.77745 1.20557 1.21850 1.21861 1.84055 1.19313 0.96528 1.51989 0.92324 0.92064 0.92608 0.90838 0.92104 0.92489 0.92311 0.88377 0.89391 0.80212 0.76365 0.91319 0.92424 0.92278 0.91303 0.90025 0.91893 0.92092 0.96561 0.96472 0.78346 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.99 37.16 0.33 -0.92 16 2 C -0.09 -0.62 2.91 -90.62 -0.26 -0.89 16 3 C -0.15 -0.76 9.19 37.16 0.34 -0.41 16 4 C -0.04 -0.29 5.27 -27.89 -0.15 -0.43 16 5 C 0.05 0.44 5.88 -13.29 -0.08 0.36 16 6 N -0.47 -5.19 9.74 -11.50 -0.11 -5.31 16 7 C 0.10 1.03 10.93 -18.85 -0.21 0.82 16 8 C -0.30 -3.47 6.48 -37.09 -0.24 -3.71 16 9 C 0.60 7.92 7.75 -12.85 -0.10 7.82 16 10 O -0.54 -8.84 16.63 5.21 0.09 -8.75 16 11 N -0.71 -7.89 4.51 -55.12 -0.25 -8.14 16 12 C 0.14 1.61 2.57 -67.93 -0.17 1.44 16 13 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 14 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 15 C -0.12 -1.42 4.75 -26.73 -0.13 -1.54 16 16 C -0.13 -1.99 5.22 -26.72 -0.14 -2.12 16 17 C 0.15 3.06 6.26 -4.04 -0.03 3.04 16 18 N -0.73 -19.09 5.60 -59.91 -0.34 -19.42 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 23 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 S 0.22 2.25 23.01 -107.50 -2.47 -0.23 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.65 6.80 -51.93 -0.35 0.30 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.18 1.50 7.15 -52.49 -0.38 1.12 16 38 H 0.40 3.66 7.31 -40.82 -0.30 3.36 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 415.29 15.07 6.26 6.26 Total: -1.00 -34.45 415.29 -10.29 -44.74 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.45 Total: 6.56 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.72 Total: -5.32 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.03 Total: -60.95 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.47 Total: -0.23 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.45 -10.29 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649475697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.591 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds