Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47138 * 265.25193 * 3 2 1 5 5 H 1.48491 * 109.47248 * 25.25350 * 3 2 1 6 6 H 1.48497 * 109.46950 * 145.25255 * 3 2 1 7 7 C 1.40026 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00035 * 352.28999 * 7 2 1 9 9 C 1.41325 * 119.99965 * 172.28563 * 7 2 1 10 10 C 1.40591 * 119.77872 * 166.39580 * 9 7 2 11 11 C 1.38355 * 119.13984 * 180.02562 * 10 9 7 12 12 C 1.38631 * 118.68154 * 359.74624 * 11 10 9 13 13 C 1.39755 * 119.49593 * 0.47974 * 12 11 10 14 14 N 1.38820 * 119.58763 * 179.78768 * 13 12 11 15 15 C 1.46847 * 110.99963 * 291.41994 * 14 13 12 16 16 C 1.53041 * 109.52443 * 174.15917 * 15 14 13 17 17 C 1.53126 * 109.27532 * 59.17841 * 16 15 14 18 18 C 1.53115 * 109.16444 * 302.34980 * 17 16 15 19 19 H 1.09003 * 109.53282 * 297.69443 * 18 17 16 20 20 C 1.50693 * 109.50414 * 177.59703 * 18 17 16 21 21 N 1.30502 * 126.36792 * 300.16386 * 20 18 17 22 22 N 1.28578 * 109.66535 * 180.09060 * 21 20 18 23 23 C 1.30670 * 109.63721 * 0.08137 * 22 21 20 24 24 N 1.35180 * 107.33282 * 359.80849 * 23 22 21 25 25 C 1.46798 * 111.15167 * 180.26325 * 24 23 22 26 26 C 1.54430 * 105.56217 * 342.99336 * 25 24 23 27 27 C 1.51342 * 142.72269 * 179.83263 * 23 22 21 28 28 C 1.46845 * 111.00069 * 167.21405 * 14 13 12 29 29 N 1.31988 * 120.82660 * 359.51408 * 13 12 11 30 30 H 0.97000 * 120.00180 * 0.02562 * 1 2 3 31 31 H 1.07991 * 120.43175 * 359.97438 * 10 9 7 32 32 H 1.08000 * 120.65564 * 179.97438 * 11 10 9 33 33 H 1.07999 * 120.25439 * 180.27010 * 12 11 10 34 34 H 1.08995 * 109.46725 * 294.17709 * 15 14 13 35 35 H 1.08997 * 109.46410 * 54.15944 * 15 14 13 36 36 H 1.08998 * 109.50739 * 179.11912 * 16 15 14 37 37 H 1.09001 * 109.50560 * 299.20565 * 16 15 14 38 38 H 1.08994 * 109.52065 * 182.43889 * 17 16 15 39 39 H 1.08999 * 109.51984 * 62.25255 * 17 16 15 40 40 H 1.08996 * 110.22562 * 223.96980 * 25 24 23 41 41 H 1.09002 * 110.30264 * 102.05250 * 25 24 23 42 42 H 1.08999 * 110.96098 * 267.46917 * 26 25 24 43 43 H 1.08996 * 110.96108 * 143.73103 * 26 25 24 44 44 H 1.08998 * 110.47478 * 77.76967 * 27 23 22 45 45 H 1.08996 * 110.47438 * 315.16064 * 27 23 22 46 46 H 1.08999 * 109.46700 * 65.81875 * 28 14 13 47 47 H 1.09008 * 109.46134 * 305.84997 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5893 1.9885 -1.3953 5 1 1.3923 2.6795 0.5973 6 1 3.4851 1.4712 0.7980 7 6 2.0075 -1.2127 0.0005 8 1 1.4749 -2.1437 0.1264 9 6 3.4112 -1.2183 -0.1637 10 6 4.1427 -2.3849 0.1196 11 6 5.5164 -2.3756 -0.0453 12 6 6.1250 -1.2125 -0.4912 13 6 5.3438 -0.0834 -0.7516 14 7 5.9519 1.0836 -1.1940 15 6 6.7766 1.6809 -0.1360 16 6 7.5434 2.8792 -0.7003 17 6 6.5464 3.9091 -1.2389 18 6 5.6676 3.2484 -2.3046 19 1 6.2892 2.9216 -3.1382 20 6 4.6446 4.2388 -2.7979 21 7 3.7367 4.8377 -2.0766 22 7 3.0339 5.6140 -2.8228 23 6 3.4616 5.5435 -4.0555 24 7 4.4957 4.6731 -4.0739 25 6 5.0475 4.5346 -5.4272 26 6 3.9668 5.0991 -6.3750 27 6 3.2150 6.0818 -5.4483 28 6 4.9554 2.0394 -1.6937 29 7 4.0346 -0.1141 -0.5874 30 1 -0.4850 0.8400 -0.0004 31 1 3.6391 -3.2766 0.4624 32 1 6.1023 -3.2579 0.1656 33 1 7.1951 -1.1783 -0.6330 34 1 6.1356 2.0120 0.6810 35 1 7.4841 0.9395 0.2352 36 1 8.1434 3.3318 0.0891 37 1 8.1955 2.5464 -1.5078 38 1 7.0889 4.7447 -1.6809 39 1 5.9201 4.2708 -0.4234 40 1 5.2348 3.4846 -5.6521 41 1 5.9686 5.1098 -5.5208 42 1 3.3034 4.3082 -6.7250 43 1 4.4209 5.6251 -7.2147 44 1 3.6243 7.0872 -5.5465 45 1 2.1489 6.0794 -5.6748 46 1 4.3227 2.3688 -0.8695 47 1 4.3399 1.5583 -2.4539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649756657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = 126.174343 kcal Electronic energy + Delta-G solvation = -30276.717461 eV Core-core repulsion = 26460.713771 eV Total energy + Delta-G solvation = -3816.003690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.39161 -39.77290 -37.82555 -37.32446 -34.27937 -33.32680 -32.46473 -31.41197 -30.86898 -29.37397 -29.16668 -27.48100 -25.82806 -24.36767 -23.76566 -22.76282 -21.51908 -21.35494 -21.07500 -20.22649 -19.37612 -17.66117 -17.28705 -16.88631 -16.16768 -15.24423 -15.07540 -14.86672 -14.69667 -14.61583 -14.43427 -14.11648 -13.80437 -13.74949 -13.49927 -13.39528 -13.17598 -12.75007 -12.47508 -12.35924 -12.06997 -12.03811 -11.76969 -11.60724 -11.32044 -11.25296 -10.88076 -10.81038 -10.70956 -10.54376 -10.44290 -10.28182 -10.17624 -10.09860 -10.02943 -9.36736 -8.93662 -8.76034 -8.43081 -7.72468 -7.30824 -6.85555 -4.68487 1.78809 2.35999 2.47008 2.65807 2.92146 3.53207 3.56524 3.59020 3.68273 3.95488 4.09174 4.27529 4.34551 4.39621 4.45980 4.59845 4.78073 4.89072 4.91523 4.98970 5.08540 5.15785 5.20531 5.31822 5.42116 5.49027 5.52112 5.55568 5.63309 5.69818 5.80640 5.88510 5.91052 6.03827 6.07901 6.11035 6.19327 6.28150 6.35986 6.39341 6.53145 6.57713 6.66977 6.80287 7.06822 7.18998 7.39779 7.52372 7.64112 7.97087 8.18116 8.59401 8.62722 8.82952 9.52242 10.04557 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.004612 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.463341 B = 6069.372963 C = 7368.754253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 1.009 2.991 4 H -0.269 1.269 5 H -0.332 1.332 6 H -0.272 1.272 7 C -0.411 4.411 8 H 0.096 0.904 9 C 0.262 3.738 10 C -0.271 4.271 11 C -0.038 4.038 12 C -0.303 4.303 13 C 0.340 3.660 14 N -0.481 5.481 15 C 0.058 3.942 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.001 4.001 19 H 0.090 0.910 20 C 0.213 3.787 21 N -0.278 5.278 22 N -0.279 5.279 23 C 0.145 3.855 24 N -0.495 5.495 25 C 0.102 3.898 26 C -0.129 4.129 27 C -0.037 4.037 28 C 0.072 3.928 29 N -0.593 5.593 30 H 0.289 0.711 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.973 11.078 -12.018 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.145 4.145 3 Si 0.845 3.155 4 H -0.196 1.196 5 H -0.265 1.265 6 H -0.199 1.199 7 C -0.442 4.442 8 H 0.114 0.886 9 C 0.138 3.862 10 C -0.293 4.293 11 C -0.063 4.063 12 C -0.328 4.328 13 C 0.107 3.893 14 N -0.201 5.201 15 C -0.068 4.068 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.022 4.022 19 H 0.108 0.892 20 C -0.054 4.054 21 N -0.117 5.117 22 N -0.119 5.119 23 C -0.122 4.122 24 N -0.187 5.187 25 C -0.020 4.020 26 C -0.168 4.168 27 C -0.077 4.077 28 C -0.056 4.056 29 N -0.317 5.317 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.790 12.010 -11.310 20.277 hybrid contribution 0.890 -0.443 -0.404 1.073 sum 12.680 11.567 -11.714 20.780 Atomic orbital electron populations 1.69614 1.08673 1.31137 1.32903 1.26506 0.95034 1.03920 0.89042 0.84752 0.75938 0.74747 0.80081 1.19592 1.26492 1.19920 1.19528 0.89207 0.95606 1.39905 0.88620 1.18344 0.93428 0.86566 0.87890 1.21560 0.93759 1.00042 1.13973 1.20833 0.94447 0.96085 0.94897 1.20553 0.98610 0.94122 1.19555 1.19367 0.88951 0.89783 0.91244 1.59373 1.22672 1.04484 1.33531 1.22165 0.96184 0.96403 0.92064 1.21598 0.97454 0.94898 1.01053 1.21622 0.97337 0.97719 0.98179 1.19724 0.92088 0.91471 0.98930 0.89151 1.24398 1.00648 1.00943 0.79389 1.74452 1.04408 1.08096 1.24716 1.74006 1.21786 1.17878 0.98236 1.25925 0.91732 0.96696 0.97861 1.47214 1.28070 1.34779 1.08656 1.22389 0.98047 1.04048 0.77565 1.22816 0.96921 0.99492 0.97522 1.20615 1.03421 0.99231 0.84426 1.22353 0.92552 0.90110 1.00597 1.66803 1.09374 1.29472 1.26027 0.90132 0.87519 0.87748 0.87729 0.93937 0.89780 0.90742 0.90892 0.91778 0.90636 0.88525 0.88809 0.89100 0.87802 0.88248 0.87967 0.91624 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.66 13.92 55.55 0.77 -21.89 16 2 C 0.08 2.20 5.52 -17.35 -0.10 2.10 16 3 Si 1.01 26.88 22.35 -169.99 -3.80 23.08 16 4 H -0.27 -7.20 5.36 56.52 0.30 -6.90 16 5 H -0.33 -9.00 7.11 56.52 0.40 -8.59 16 6 H -0.27 -7.39 6.29 56.52 0.36 -7.04 16 7 C -0.41 -11.64 9.70 -37.74 -0.37 -12.01 16 8 H 0.10 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.26 6.97 6.25 -85.00 -0.53 6.44 16 10 C -0.27 -6.40 9.83 -38.65 -0.38 -6.78 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.30 -6.36 9.33 -38.87 -0.36 -6.72 16 13 C 0.34 7.75 6.12 -155.31 -0.95 6.80 16 14 N -0.48 -9.34 4.64 -173.20 -0.80 -10.14 16 15 C 0.06 0.95 5.34 -3.83 -0.02 0.93 16 16 C -0.11 -1.39 6.09 -26.64 -0.16 -1.55 16 17 C -0.11 -1.51 5.27 -26.61 -0.14 -1.65 16 18 C 0.00 -0.01 2.82 -91.70 -0.26 -0.27 16 19 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.21 3.63 6.82 -154.90 -1.06 2.57 16 21 N -0.28 -5.65 12.21 32.81 0.40 -5.25 16 22 N -0.28 -5.33 12.22 32.93 0.40 -4.92 16 23 C 0.15 2.09 8.69 -154.83 -1.35 0.74 16 24 N -0.49 -6.74 3.62 -109.39 -0.40 -7.14 16 25 C 0.10 0.79 7.77 -3.13 -0.02 0.77 16 26 C -0.13 -0.70 7.17 -25.15 -0.18 -0.88 16 27 C -0.04 -0.29 6.85 -26.74 -0.18 -0.48 16 28 C 0.07 1.45 2.73 -3.83 -0.01 1.44 16 29 N -0.59 -15.35 3.82 -10.33 -0.04 -15.39 16 30 H 0.29 7.59 8.29 -40.82 -0.34 7.26 16 31 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.10 1.92 7.89 -52.49 -0.41 1.51 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.52 4.00 -51.93 -0.21 1.31 16 47 H 0.08 1.84 7.47 -51.92 -0.39 1.45 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -35.24 364.95 -11.45 -46.69 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.02 Total: -0.80 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -6.47 Total: -9.74 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.34 Total: -64.73 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -3.80 Total: 23.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.24 -11.45 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649756657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.864 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds