Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47138 * 265.25193 * 3 2 1 5 5 H 1.48491 * 109.47248 * 25.25350 * 3 2 1 6 6 H 1.48497 * 109.46950 * 145.25255 * 3 2 1 7 7 C 1.40026 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00035 * 352.28999 * 7 2 1 9 9 C 1.41325 * 119.99965 * 172.28563 * 7 2 1 10 10 C 1.40591 * 119.77872 * 166.39580 * 9 7 2 11 11 C 1.38355 * 119.13984 * 180.02562 * 10 9 7 12 12 C 1.38631 * 118.68154 * 359.74624 * 11 10 9 13 13 C 1.39755 * 119.49593 * 0.47974 * 12 11 10 14 14 N 1.38820 * 119.58763 * 179.78768 * 13 12 11 15 15 C 1.46847 * 110.99963 * 291.41994 * 14 13 12 16 16 C 1.53041 * 109.52443 * 174.15917 * 15 14 13 17 17 C 1.53126 * 109.27532 * 59.17841 * 16 15 14 18 18 C 1.53115 * 109.16444 * 302.34980 * 17 16 15 19 19 H 1.09003 * 109.53282 * 297.69443 * 18 17 16 20 20 C 1.50693 * 109.50414 * 177.59703 * 18 17 16 21 21 N 1.30502 * 126.36792 * 300.16386 * 20 18 17 22 22 N 1.28578 * 109.66535 * 180.09060 * 21 20 18 23 23 C 1.30670 * 109.63721 * 0.08137 * 22 21 20 24 24 N 1.35180 * 107.33282 * 359.80849 * 23 22 21 25 25 C 1.46798 * 111.15167 * 180.26325 * 24 23 22 26 26 C 1.54430 * 105.56217 * 342.99336 * 25 24 23 27 27 C 1.51342 * 142.72269 * 179.83263 * 23 22 21 28 28 C 1.46845 * 111.00069 * 167.21405 * 14 13 12 29 29 N 1.31988 * 120.82660 * 359.51408 * 13 12 11 30 30 H 0.97000 * 120.00180 * 0.02562 * 1 2 3 31 31 H 1.07991 * 120.43175 * 359.97438 * 10 9 7 32 32 H 1.08000 * 120.65564 * 179.97438 * 11 10 9 33 33 H 1.07999 * 120.25439 * 180.27010 * 12 11 10 34 34 H 1.08995 * 109.46725 * 294.17709 * 15 14 13 35 35 H 1.08997 * 109.46410 * 54.15944 * 15 14 13 36 36 H 1.08998 * 109.50739 * 179.11912 * 16 15 14 37 37 H 1.09001 * 109.50560 * 299.20565 * 16 15 14 38 38 H 1.08994 * 109.52065 * 182.43889 * 17 16 15 39 39 H 1.08999 * 109.51984 * 62.25255 * 17 16 15 40 40 H 1.08996 * 110.22562 * 223.96980 * 25 24 23 41 41 H 1.09002 * 110.30264 * 102.05250 * 25 24 23 42 42 H 1.08999 * 110.96098 * 267.46917 * 26 25 24 43 43 H 1.08996 * 110.96108 * 143.73103 * 26 25 24 44 44 H 1.08998 * 110.47478 * 77.76967 * 27 23 22 45 45 H 1.08996 * 110.47438 * 315.16064 * 27 23 22 46 46 H 1.08999 * 109.46700 * 65.81875 * 28 14 13 47 47 H 1.09008 * 109.46134 * 305.84997 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5893 1.9885 -1.3953 5 1 1.3923 2.6795 0.5973 6 1 3.4851 1.4712 0.7980 7 6 2.0075 -1.2127 0.0005 8 1 1.4749 -2.1437 0.1264 9 6 3.4112 -1.2183 -0.1637 10 6 4.1427 -2.3849 0.1196 11 6 5.5164 -2.3756 -0.0453 12 6 6.1250 -1.2125 -0.4912 13 6 5.3438 -0.0834 -0.7516 14 7 5.9519 1.0836 -1.1940 15 6 6.7766 1.6809 -0.1360 16 6 7.5434 2.8792 -0.7003 17 6 6.5464 3.9091 -1.2389 18 6 5.6676 3.2484 -2.3046 19 1 6.2892 2.9216 -3.1382 20 6 4.6446 4.2388 -2.7979 21 7 3.7367 4.8377 -2.0766 22 7 3.0339 5.6140 -2.8228 23 6 3.4616 5.5435 -4.0555 24 7 4.4957 4.6731 -4.0739 25 6 5.0475 4.5346 -5.4272 26 6 3.9668 5.0991 -6.3750 27 6 3.2150 6.0818 -5.4483 28 6 4.9554 2.0394 -1.6937 29 7 4.0346 -0.1141 -0.5874 30 1 -0.4850 0.8400 -0.0004 31 1 3.6391 -3.2766 0.4624 32 1 6.1023 -3.2579 0.1656 33 1 7.1951 -1.1783 -0.6330 34 1 6.1356 2.0120 0.6810 35 1 7.4841 0.9395 0.2352 36 1 8.1434 3.3318 0.0891 37 1 8.1955 2.5464 -1.5078 38 1 7.0889 4.7447 -1.6809 39 1 5.9201 4.2708 -0.4234 40 1 5.2348 3.4846 -5.6521 41 1 5.9686 5.1098 -5.5208 42 1 3.3034 4.3082 -6.7250 43 1 4.4209 5.6251 -7.2147 44 1 3.6243 7.0872 -5.5465 45 1 2.1489 6.0794 -5.6748 46 1 4.3227 2.3688 -0.8695 47 1 4.3399 1.5583 -2.4539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649756657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 103.364411 kcal Electronic energy + Delta-G solvation = -30277.706574 eV Core-core repulsion = 26460.713771 eV Total energy + Delta-G solvation = -3816.992803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.50806 -41.41158 -39.39651 -38.22497 -35.97739 -35.09018 -33.67444 -33.05791 -32.11158 -31.03390 -30.33373 -28.44840 -27.70622 -25.83533 -25.16403 -23.58154 -23.19060 -22.73178 -22.19611 -21.61075 -20.63386 -19.66819 -18.67745 -18.00371 -17.30162 -16.95326 -16.68485 -16.51251 -16.18130 -15.81326 -15.65805 -15.54663 -15.18783 -14.79315 -14.71075 -14.51457 -14.31344 -14.15187 -14.11606 -13.96069 -13.58290 -13.28822 -12.94002 -12.80289 -12.65887 -12.52891 -12.49270 -12.38070 -12.24856 -12.08843 -11.93735 -11.78803 -11.66314 -11.44980 -11.37335 -11.01772 -10.58792 -10.30640 -10.14587 -9.70950 -9.12800 -8.97136 -6.78541 0.57385 0.68381 0.80295 1.36716 1.40694 1.44567 1.48386 1.68927 2.18891 2.43023 2.60937 2.79855 3.20965 3.40245 3.50124 3.55355 3.68284 3.81668 3.87179 3.91355 3.97584 4.12106 4.19601 4.27462 4.35357 4.40481 4.45889 4.47676 4.53393 4.64724 4.71663 4.72441 4.76890 4.77115 4.79426 4.83953 4.91613 4.95511 5.00795 5.03196 5.06327 5.17053 5.17530 5.32240 5.44470 5.66524 5.71715 5.82547 5.84823 5.98451 6.20441 6.52593 6.67039 7.59849 7.62470 7.95294 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.004612 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.463341 B = 6069.372963 C = 7368.754253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.054 3.946 3 Si 1.062 2.938 4 H -0.282 1.282 5 H -0.350 1.350 6 H -0.287 1.287 7 C -0.451 4.451 8 H 0.080 0.920 9 C 0.247 3.753 10 C -0.283 4.283 11 C -0.027 4.027 12 C -0.275 4.275 13 C 0.315 3.685 14 N -0.468 5.468 15 C 0.052 3.948 16 C -0.098 4.098 17 C -0.107 4.107 18 C 0.010 3.990 19 H 0.120 0.880 20 C 0.199 3.801 21 N -0.335 5.335 22 N -0.343 5.343 23 C 0.152 3.848 24 N -0.494 5.494 25 C 0.087 3.913 26 C -0.114 4.114 27 C -0.037 4.037 28 C 0.080 3.920 29 N -0.616 5.616 30 H 0.291 0.709 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.012 0.988 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.028 0.972 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.331 11.279 -14.728 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.163 4.163 3 Si 0.901 3.099 4 H -0.210 1.210 5 H -0.285 1.285 6 H -0.215 1.215 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.121 3.879 10 C -0.305 4.305 11 C -0.051 4.051 12 C -0.299 4.299 13 C 0.082 3.918 14 N -0.188 5.188 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.145 4.145 18 C -0.011 4.011 19 H 0.138 0.862 20 C -0.070 4.070 21 N -0.173 5.173 22 N -0.183 5.183 23 C -0.118 4.118 24 N -0.186 5.186 25 C -0.032 4.032 26 C -0.152 4.152 27 C -0.077 4.077 28 C -0.049 4.049 29 N -0.340 5.340 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.030 0.970 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.106 0.894 43 H 0.167 0.833 44 H 0.146 0.854 45 H 0.127 0.873 46 H 0.046 0.954 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.194 12.217 -14.049 25.343 hybrid contribution -0.451 -0.573 0.333 0.802 sum 16.743 11.644 -13.716 24.577 Atomic orbital electron populations 1.69626 1.08883 1.31354 1.36276 1.26773 0.95366 1.04824 0.89380 0.83936 0.74110 0.73110 0.78704 1.20979 1.28532 1.21514 1.19512 0.90534 0.94879 1.43463 0.90231 1.18527 0.93217 0.88108 0.88050 1.21787 0.95352 0.99308 1.14053 1.21370 0.93385 0.97761 0.92629 1.21132 1.00493 0.92818 1.15433 1.20035 0.88296 0.92113 0.91347 1.59566 1.21637 1.03584 1.33971 1.22425 0.95699 0.98579 0.90682 1.21610 0.96757 0.92557 1.02667 1.21629 0.97079 0.98998 0.96793 1.19711 0.91833 0.89409 1.00175 0.86222 1.24510 1.00483 1.01109 0.80869 1.74296 1.06125 1.09776 1.27137 1.73829 1.23792 1.19890 1.00744 1.27069 0.90554 0.95579 0.98555 1.47583 1.27843 1.33764 1.09377 1.22987 0.99985 1.05443 0.74831 1.22922 0.95846 0.98914 0.97501 1.21033 1.04660 1.01133 0.80863 1.22063 0.92705 0.91630 0.98467 1.66612 1.11475 1.29647 1.26239 0.89875 0.86458 0.82732 0.83530 0.96991 0.87633 0.87709 0.88171 0.88820 0.93600 0.87891 0.85624 0.89360 0.83256 0.85363 0.87283 0.95415 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.71 13.92 21.84 0.30 -50.40 16 2 C 0.05 3.31 5.52 85.29 0.47 3.78 16 3 Si 1.06 60.86 22.35 68.60 1.53 62.39 16 4 H -0.28 -16.45 5.36 99.48 0.53 -15.91 16 5 H -0.35 -20.56 7.11 99.48 0.71 -19.85 16 6 H -0.29 -16.68 6.29 99.48 0.63 -16.05 16 7 C -0.45 -27.08 9.70 23.46 0.23 -26.85 16 8 H 0.08 4.86 8.06 -2.91 -0.02 4.84 16 9 C 0.25 13.48 6.25 40.19 0.25 13.73 16 10 C -0.28 -13.04 9.83 22.87 0.22 -12.82 16 11 C -0.03 -1.02 10.15 22.39 0.23 -0.80 16 12 C -0.27 -10.32 9.33 22.73 0.21 -10.11 16 13 C 0.31 13.92 6.12 133.40 0.82 14.74 16 14 N -0.47 -17.45 4.64 -701.90 -3.25 -20.71 16 15 C 0.05 1.56 5.34 86.33 0.46 2.02 16 16 C -0.10 -2.04 6.09 30.65 0.19 -1.85 16 17 C -0.11 -2.72 5.27 30.67 0.16 -2.56 16 18 C 0.01 0.30 2.82 -11.49 -0.03 0.27 16 19 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 20 C 0.20 6.89 6.82 137.94 0.94 7.83 16 21 N -0.33 -14.48 12.21 -50.10 -0.61 -15.10 16 22 N -0.34 -13.85 12.22 -49.74 -0.61 -14.45 16 23 C 0.15 4.33 8.69 138.24 1.20 5.53 16 24 N -0.49 -12.93 3.62 -499.99 -1.81 -14.74 16 25 C 0.09 1.04 7.77 86.81 0.67 1.72 16 26 C -0.11 -0.76 7.17 31.62 0.23 -0.53 16 27 C -0.04 -0.49 6.85 30.59 0.21 -0.28 16 28 C 0.08 3.30 2.73 86.33 0.24 3.54 16 29 N -0.62 -32.61 3.82 -186.59 -0.71 -33.32 16 30 H 0.29 16.53 8.29 -92.71 -0.77 15.76 16 31 H 0.12 5.08 8.06 -2.92 -0.02 5.05 16 32 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.15 4.36 7.89 -2.91 -0.02 4.34 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 2.71 7.42 -2.39 -0.02 2.69 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.13 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.03 1.36 4.00 -2.39 -0.01 1.35 16 47 H 0.04 2.14 7.47 -2.38 -0.02 2.12 16 Total: -1.00 -88.25 364.95 2.26 -85.99 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 0.73 Total: 2.98 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 6.70 Total: -2.64 kcal Atomic # 7 Polarization: -142.03 SS G_CDS: -6.69 Total: -148.72 kcal Atomic # 14 Polarization: 60.86 SS G_CDS: 1.53 Total: 62.39 kcal Total: -88.25 2.26 -85.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649756657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.357 kcal (2) G-P(sol) polarization free energy of solvation -88.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds