Wall clock time and date at job start Sat Apr 11 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 120.00004 * 2 1 4 4 H 1.48498 * 109.47057 * 270.00332 * 3 2 1 5 5 H 1.48497 * 109.46783 * 30.00499 * 3 2 1 6 6 H 1.48496 * 109.46866 * 150.00128 * 3 2 1 7 7 C 1.40023 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.41312 * 120.00460 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78802 * 180.02562 * 9 7 2 11 11 C 1.38344 * 119.14673 * 179.97438 * 10 9 7 12 12 C 1.38636 * 118.68145 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49538 * 359.97438 * 12 11 10 14 14 N 1.38826 * 119.58660 * 180.02562 * 13 12 11 15 15 C 1.46840 * 111.00137 * 304.18655 * 14 13 12 16 16 C 1.53034 * 109.52365 * 174.16007 * 15 14 13 17 17 C 1.53118 * 109.27904 * 59.18403 * 16 15 14 18 18 C 1.50699 * 109.52403 * 182.44045 * 17 16 15 19 19 N 1.30506 * 126.36882 * 59.70454 * 18 17 16 20 20 N 1.28574 * 109.66674 * 180.02562 * 19 18 17 21 21 C 1.30680 * 109.63525 * 0.07676 * 20 19 18 22 22 N 1.35178 * 107.32827 * 359.56095 * 21 20 19 23 23 C 1.46802 * 111.14603 * 180.02562 * 22 21 20 24 24 C 1.54421 * 105.62517 * 343.36219 * 23 22 21 25 25 C 1.51331 * 142.72285 * 179.79014 * 21 20 19 26 26 C 1.53118 * 109.15681 * 302.34252 * 17 16 15 27 27 C 1.46845 * 110.99935 * 179.97438 * 14 13 12 28 28 N 1.31985 * 120.83101 * 0.02562 * 13 12 11 29 29 H 0.97007 * 119.99741 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.42315 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66066 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.25101 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.46365 * 294.17763 * 15 14 13 34 34 H 1.09007 * 109.45869 * 54.14334 * 15 14 13 35 35 H 1.08998 * 109.50634 * 299.23625 * 16 15 14 36 36 H 1.09004 * 109.53596 * 179.14700 * 16 15 14 37 37 H 1.08991 * 109.52407 * 62.24978 * 17 16 15 38 38 H 1.08996 * 110.38822 * 224.21551 * 23 22 21 39 39 H 1.09000 * 110.00563 * 102.30340 * 23 22 21 40 40 H 1.09008 * 110.96072 * 267.25538 * 24 23 22 41 41 H 1.09006 * 110.96287 * 143.51922 * 24 23 22 42 42 H 1.09002 * 110.47304 * 315.17061 * 25 21 20 43 43 H 1.08999 * 110.47648 * 77.64377 * 25 21 20 44 44 H 1.08996 * 109.50708 * 297.71713 * 26 17 16 45 45 H 1.09006 * 109.50420 * 177.59520 * 26 17 16 46 46 H 1.08999 * 109.46394 * 305.85910 * 27 14 13 47 47 H 1.09008 * 109.46203 * 65.82441 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4390 2.6526 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0000 13 6 -0.7282 -3.5552 0.0000 14 7 -2.1155 -3.5055 0.0005 15 6 -2.6694 -4.2568 -1.1331 16 6 -4.1948 -4.3030 -1.0197 17 6 -4.7448 -2.8740 -1.0128 18 6 -6.2415 -2.9112 -0.8410 19 7 -6.8922 -3.4247 0.1670 20 7 -8.1568 -3.2817 -0.0163 21 6 -8.3696 -2.6711 -1.1519 22 7 -7.1624 -2.4115 -1.7019 23 6 -7.3046 -1.7212 -2.9896 24 6 -8.7731 -1.9354 -3.4165 25 6 -9.4697 -2.1560 -2.0544 26 6 -4.1156 -2.0990 0.1482 27 6 -2.5924 -2.1167 0.0010 28 7 -0.0360 -2.4314 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.0886 -3.6553 -0.0010 31 1 1.8222 -5.7890 0.0004 32 1 -0.6577 -5.7082 0.0000 33 1 -2.3893 -3.7664 -2.0654 34 1 -2.2735 -5.2724 -1.1239 35 1 -4.4759 -4.8056 -0.0942 36 1 -4.6072 -4.8476 -1.8691 37 1 -4.4974 -2.3840 -1.9544 38 1 -6.6302 -2.1536 -3.7288 39 1 -7.0990 -0.6577 -2.8674 40 1 -8.8701 -2.8163 -4.0513 41 1 -9.1667 -1.0507 -3.9171 42 1 -10.2642 -2.8965 -2.1480 43 1 -9.8686 -1.2167 -1.6714 44 1 -4.3953 -2.5669 1.0921 45 1 -4.4707 -1.0685 0.1328 46 1 -2.1407 -1.5779 0.8339 47 1 -2.3126 -1.6363 -0.9367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649758263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:24 Heat of formation + Delta-G solvation = 112.723272 kcal Electronic energy + Delta-G solvation = -29261.374292 eV Core-core repulsion = 25444.787320 eV Total energy + Delta-G solvation = -3816.586972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.42680 -41.00907 -39.09998 -38.15296 -35.90423 -34.99099 -32.95849 -32.53827 -31.69392 -31.09959 -30.18881 -28.53414 -27.47690 -25.84424 -24.44395 -23.60018 -22.89148 -22.54596 -22.07417 -21.58311 -20.40890 -19.35650 -18.08820 -17.90884 -17.33143 -16.62978 -16.39396 -16.28445 -16.01542 -15.70444 -15.56625 -15.04675 -14.97613 -14.83507 -14.36838 -14.26165 -14.24183 -14.02712 -13.81376 -13.72103 -13.19228 -12.87049 -12.75252 -12.61965 -12.57939 -12.45941 -12.33868 -12.29889 -12.22847 -12.12780 -11.82219 -11.69678 -11.63016 -11.30176 -11.23170 -10.95911 -10.46315 -10.03319 -9.90393 -9.48563 -8.74282 -8.27429 -6.48530 0.77905 0.90535 1.20172 1.40806 1.50197 1.52215 1.54731 1.77226 2.23146 2.76081 2.78549 2.98154 3.21875 3.46320 3.59977 3.73193 3.86518 3.93011 3.97150 4.00900 4.11410 4.33680 4.35673 4.39894 4.46402 4.49337 4.51166 4.58935 4.63394 4.71421 4.77301 4.84312 4.88245 4.90061 4.94438 4.95753 5.02468 5.06141 5.09849 5.16672 5.22078 5.28317 5.33075 5.42715 5.68208 5.88544 5.90813 5.99715 6.03838 6.34161 6.51621 6.80395 7.07745 7.70804 8.19188 8.45770 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002897 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.071600 B = 9661.495170 C =10969.200642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.240 3.760 10 C -0.320 4.320 11 C -0.042 4.042 12 C -0.324 4.324 13 C 0.307 3.693 14 N -0.484 5.484 15 C 0.071 3.929 16 C -0.089 4.089 17 C 0.010 3.990 18 C 0.205 3.795 19 N -0.323 5.323 20 N -0.337 5.337 21 C 0.151 3.849 22 N -0.495 5.495 23 C 0.085 3.915 24 C -0.111 4.111 25 C -0.038 4.038 26 C -0.094 4.094 27 C 0.101 3.899 28 N -0.533 5.533 29 H 0.276 0.724 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.139 0.861 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 0.715 -12.072 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.114 3.886 10 C -0.342 4.342 11 C -0.066 4.066 12 C -0.349 4.349 13 C 0.069 3.931 14 N -0.202 5.202 15 C -0.055 4.055 16 C -0.128 4.128 17 C -0.011 4.011 18 C -0.063 4.063 19 N -0.161 5.161 20 N -0.177 5.177 21 C -0.118 4.118 22 N -0.186 5.186 23 C -0.035 4.035 24 C -0.149 4.149 25 C -0.078 4.078 26 C -0.133 4.133 27 C -0.026 4.026 28 N -0.252 5.252 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -18.680 0.747 -10.352 21.369 hybrid contribution 1.793 0.663 -1.101 2.206 sum -16.887 1.409 -11.453 20.453 Atomic orbital electron populations 1.70216 1.08455 1.28630 1.29189 1.26870 0.95799 1.04038 0.92660 0.85198 0.78979 0.76145 0.79299 1.18772 1.19419 1.18406 1.19896 0.94571 0.90394 1.44888 0.89694 1.18824 0.88189 0.93291 0.88299 1.21814 0.99219 0.93745 1.19443 1.21097 0.93728 0.97433 0.94366 1.21031 0.94761 0.96376 1.22702 1.20278 0.89496 0.90629 0.92726 1.59145 1.04196 1.15280 1.41614 1.22127 0.94725 0.98839 0.89829 1.21508 0.93023 0.94627 1.03646 1.19616 0.82742 0.98474 1.00268 1.24432 0.94710 0.98841 0.88268 1.74319 0.98434 1.21689 1.21706 1.73861 1.08751 1.19454 1.15642 1.26950 0.90762 1.00289 0.93799 1.47565 1.07047 1.43470 1.20534 1.22937 1.01683 0.98479 0.80422 1.22888 0.89612 1.06682 0.95726 1.20991 0.92938 1.03343 0.90537 1.21563 0.93857 0.99767 0.98074 1.21474 0.92664 0.87185 1.01313 1.68640 1.07969 1.26228 1.22347 0.91320 0.87644 0.84982 0.86302 0.94856 0.89164 0.91081 0.89170 0.88542 0.87297 0.87450 0.88231 0.84273 0.86580 0.86440 0.91832 0.91174 0.92003 0.95194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.63 11.46 21.84 0.25 -38.38 16 2 C 0.03 1.44 5.50 85.29 0.47 1.91 16 3 Si 0.98 37.87 29.56 68.60 2.03 39.90 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.47 -25.33 9.14 23.46 0.21 -25.12 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.24 13.47 6.55 40.19 0.26 13.73 16 10 C -0.32 -16.07 9.83 22.87 0.22 -15.84 16 11 C -0.04 -1.88 10.15 22.39 0.23 -1.65 16 12 C -0.32 -14.68 9.20 22.73 0.21 -14.47 16 13 C 0.31 15.06 6.41 133.40 0.86 15.92 16 14 N -0.48 -20.31 4.67 -701.91 -3.28 -23.60 16 15 C 0.07 2.38 5.24 86.33 0.45 2.83 16 16 C -0.09 -2.53 5.36 30.64 0.16 -2.36 16 17 C 0.01 0.28 2.73 -11.46 -0.03 0.25 16 18 C 0.21 5.93 6.82 137.95 0.94 6.87 16 19 N -0.32 -11.40 12.21 -50.10 -0.61 -12.01 16 20 N -0.34 -11.15 12.22 -49.74 -0.61 -11.76 16 21 C 0.15 3.47 8.69 138.23 1.20 4.67 16 22 N -0.49 -10.70 3.62 -500.00 -1.81 -12.51 16 23 C 0.08 0.83 7.77 86.80 0.67 1.51 16 24 C -0.11 -0.36 7.17 31.61 0.23 -0.13 16 25 C -0.04 -0.35 6.85 30.59 0.21 -0.14 16 26 C -0.09 -3.16 5.36 30.65 0.16 -2.99 16 27 C 0.10 4.19 4.65 86.33 0.40 4.60 16 28 N -0.53 -29.37 6.16 -186.59 -1.15 -30.52 16 29 H 0.28 13.02 8.29 -92.70 -0.77 12.25 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 31 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.12 4.73 7.13 -2.91 -0.02 4.71 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 2.87 6.66 -2.38 -0.02 2.86 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 41 H 0.14 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.06 3.03 7.70 -2.39 -0.02 3.01 16 47 H 0.03 1.33 8.11 -2.38 -0.02 1.31 16 Total: -1.00 -76.07 378.19 2.66 -73.42 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.97 Total: 25.87 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 6.87 Total: -10.41 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -7.21 Total: -128.78 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -76.07 2.66 -73.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649758263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.139 kcal (2) G-P(sol) polarization free energy of solvation -76.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds