Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.36936 * 120.00076 * 274.99567 * 4 2 1 6 6 H 1.08002 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00446 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46848 * 90.00614 * 9 7 5 11 11 H 1.48495 * 109.47077 * 210.00433 * 9 7 5 12 12 H 1.48497 * 109.47327 * 330.00624 * 9 7 5 13 13 C 1.52997 * 109.46921 * 240.00379 * 2 1 3 14 14 H 1.09000 * 109.47140 * 175.00145 * 13 2 1 15 15 C 1.53006 * 109.47164 * 295.00093 * 13 2 1 16 16 N 1.46500 * 109.47204 * 55.00018 * 13 2 1 17 17 C 1.34779 * 119.99741 * 155.00342 * 16 13 2 18 18 O 1.21279 * 120.00369 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99762 * 179.97438 * 17 16 13 20 20 C 1.50697 * 109.47045 * 179.97438 * 19 17 16 21 21 C 1.33635 * 122.75243 * 85.02845 * 20 19 17 22 22 S 1.76190 * 107.92884 * 180.02562 * 21 20 19 23 23 C 1.70978 * 90.28114 * 359.97438 * 22 21 20 24 24 C 1.50701 * 124.91447 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47248 * 239.97631 * 24 23 22 26 26 C 1.52998 * 109.47302 * 359.97438 * 24 23 22 27 27 C 1.53002 * 109.47041 * 119.97568 * 24 23 22 28 28 N 1.29023 * 110.16624 * 359.73749 * 23 22 21 29 29 H 1.08998 * 109.47141 * 59.99120 * 1 2 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46964 * 299.99798 * 1 2 3 32 32 H 0.97008 * 120.00184 * 94.99888 * 4 2 1 33 33 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46801 * 180.02562 * 15 13 2 35 35 H 1.09001 * 109.46998 * 299.99705 * 15 13 2 36 36 H 1.09000 * 109.47050 * 59.99996 * 15 13 2 37 37 H 0.96997 * 120.00110 * 334.99611 * 16 13 2 38 38 H 1.08994 * 109.47136 * 300.00021 * 19 17 16 39 39 H 1.09002 * 109.46457 * 59.99935 * 19 17 16 40 40 H 1.08002 * 126.03575 * 359.97438 * 21 20 19 41 41 H 1.08991 * 109.47044 * 60.00036 * 25 24 23 42 42 H 1.09005 * 109.46932 * 180.02562 * 25 24 23 43 43 H 1.08995 * 109.46852 * 299.99827 * 25 24 23 44 44 H 1.09000 * 109.47448 * 59.99929 * 26 24 23 45 45 H 1.09005 * 109.46903 * 180.02562 * 26 24 23 46 46 H 1.09000 * 109.46768 * 299.99188 * 26 24 23 47 47 H 1.09008 * 109.47064 * 59.99993 * 27 24 23 48 48 H 1.08999 * 109.47858 * 179.97438 * 27 24 23 49 49 H 1.09002 * 109.47570 * 300.00393 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5091 8 7 2.9244 -1.9392 3.4500 9 14 2.7893 0.2695 5.1185 10 1 1.5213 0.1781 5.8860 11 1 3.8936 -0.3238 5.9145 12 1 3.0943 1.6948 4.8343 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6276 18 8 3.1467 -0.7857 -3.7063 19 6 1.4900 0.4413 -4.8550 20 6 2.3905 0.1981 -6.0386 21 6 2.3353 -0.9177 -6.7719 22 16 3.5491 -0.7921 -8.0428 23 6 4.0097 0.7488 -7.4623 24 6 5.0913 1.6090 -8.0633 25 6 6.1754 1.8710 -7.0159 26 6 5.7066 0.8892 -9.2650 27 6 4.4901 2.9401 -8.5190 28 7 3.2930 1.0710 -6.4390 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6319 1.1525 33 1 3.2477 -2.3965 4.2420 34 1 1.9989 -2.7093 -2.0779 35 1 2.0698 -2.6550 -0.3004 36 1 0.5488 -2.2723 -1.1422 37 1 0.6117 0.3703 -2.3794 38 1 0.5103 0.0040 -5.0475 39 1 1.3837 1.5141 -4.6940 40 1 1.6656 -1.7499 -6.6130 41 1 6.6037 0.9228 -6.6913 42 1 6.9576 2.4936 -7.4505 43 1 5.7371 2.3838 -6.1598 44 1 4.9344 0.7025 -10.0113 45 1 6.4893 1.5113 -9.6994 46 1 6.1351 -0.0590 -8.9403 47 1 4.0517 3.4529 -7.6628 48 1 5.2724 3.5625 -8.9533 49 1 3.7177 2.7535 -9.2651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674740452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = 2.646630 kcal Electronic energy + Delta-G solvation = -27091.013322 eV Core-core repulsion = 23372.804268 eV Total energy + Delta-G solvation = -3718.209054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48842 -39.37051 -37.22933 -36.66692 -33.87277 -32.21268 -31.43926 -29.46847 -28.20189 -27.95535 -27.77184 -27.54097 -25.20323 -24.37738 -23.20652 -21.04277 -19.92723 -19.47348 -19.15129 -17.71902 -17.48264 -16.99490 -15.99166 -15.50828 -15.06740 -14.97012 -14.61403 -14.42254 -14.27171 -14.14124 -13.99279 -13.55566 -13.42173 -13.19006 -12.80563 -12.72141 -12.51455 -12.46042 -12.21846 -11.99659 -11.91404 -11.74151 -11.62449 -11.44473 -11.34246 -11.28342 -11.23381 -10.93040 -10.83551 -10.45445 -10.25254 -9.97271 -9.79907 -9.71353 -9.60984 -9.45921 -8.94232 -8.83330 -8.76317 -7.00328 -5.78316 -3.07775 0.60887 1.23918 1.61565 2.59017 2.81440 3.42201 3.45059 3.49298 3.50368 3.75805 4.38396 4.55944 4.58227 4.58824 4.79322 4.96900 5.02707 5.12775 5.19474 5.24814 5.29617 5.38145 5.42364 5.48359 5.52229 5.57962 5.59717 5.62863 5.64338 5.66553 5.73695 5.84042 5.91763 6.01316 6.07699 6.10229 6.16557 6.30426 6.40899 6.49424 6.63946 6.72843 6.94475 7.08064 7.64849 7.68635 7.72485 8.39547 8.43675 9.51426 10.07024 10.41788 11.44313 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002118 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.971990 B =13214.937585 C =13778.600864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.137 3.863 14 H 0.086 0.914 15 C -0.158 4.158 16 N -0.720 5.720 17 C 0.514 3.486 18 O -0.534 6.534 19 C -0.070 4.070 20 C 0.093 3.907 21 C -0.249 4.249 22 S 0.116 5.884 23 C 0.063 3.937 24 C 0.011 3.989 25 C -0.135 4.135 26 C -0.154 4.154 27 C -0.133 4.133 28 N -0.460 5.460 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.398 0.602 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.174 0.826 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 5.778 -28.797 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.032 3.968 14 H 0.104 0.896 15 C -0.216 4.216 16 N -0.373 5.373 17 C 0.299 3.701 18 O -0.410 6.410 19 C -0.113 4.113 20 C -0.039 4.039 21 C -0.388 4.388 22 S 0.373 5.627 23 C -0.216 4.216 24 C 0.007 3.993 25 C -0.194 4.194 26 C -0.212 4.212 27 C -0.192 4.192 28 N -0.173 5.173 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.233 0.767 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.191 0.809 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.287 5.292 -29.265 29.741 hybrid contribution -0.944 0.351 1.860 2.116 sum -1.231 5.644 -27.404 28.006 Atomic orbital electron populations 1.22533 0.99327 1.01225 0.99736 1.20360 0.92156 0.95597 0.86175 0.93084 1.42457 1.78220 1.10791 1.04844 1.19223 1.36816 0.93944 0.87130 0.91133 1.24747 1.01993 0.96010 0.98116 1.69654 1.50712 1.08677 1.28949 0.86181 0.77281 0.78812 0.83851 1.21735 1.21764 1.20758 1.21307 0.98994 0.92780 0.83678 0.89556 1.22132 1.01417 0.95908 1.02188 1.46214 1.25824 1.56924 1.08314 1.20301 0.85128 0.80326 0.84338 1.90722 1.22254 1.42526 1.85469 1.20211 0.97688 1.03897 0.89457 1.19407 0.96637 0.90288 0.97559 1.26744 1.06618 1.03932 1.01537 1.83806 1.30451 1.17713 1.30733 1.26978 1.01184 0.96945 0.96504 1.19229 0.91110 0.93831 0.95125 1.21845 0.96945 1.02266 0.98324 1.22024 1.01435 1.00889 0.96802 1.21832 1.00766 0.94801 1.01769 1.65877 1.06107 1.33082 1.12233 0.94827 0.92832 0.92420 0.77792 0.93443 0.93229 0.90580 0.92557 0.76676 0.87363 0.87144 0.80874 0.92356 0.91681 0.91323 0.91890 0.90700 0.91781 0.91390 0.91668 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.01 37.16 0.33 -2.45 16 2 C 0.17 3.25 2.93 -67.93 -0.20 3.05 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.72 -17.74 5.03 -53.43 -0.27 -18.01 16 5 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 9 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.14 2.40 2.62 -67.93 -0.18 2.22 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 15 C -0.16 -2.71 9.00 37.16 0.33 -2.37 16 16 N -0.72 -9.94 4.99 -53.80 -0.27 -10.21 16 17 C 0.51 7.52 7.79 -10.98 -0.09 7.43 16 18 O -0.53 -10.19 15.70 5.56 0.09 -10.10 16 19 C -0.07 -0.75 6.11 -29.03 -0.18 -0.93 16 20 C 0.09 1.17 5.23 -84.23 -0.44 0.73 16 21 C -0.25 -2.80 11.14 29.12 0.32 -2.47 16 22 S 0.12 1.15 21.57 -107.50 -2.32 -1.17 16 23 C 0.06 0.70 5.78 -13.46 -0.08 0.62 16 24 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 25 C -0.14 -1.22 8.45 37.16 0.31 -0.91 16 26 C -0.15 -0.98 7.54 37.16 0.28 -0.70 16 27 C -0.13 -0.99 8.45 37.16 0.31 -0.67 16 28 N -0.46 -6.06 10.51 -8.06 -0.08 -6.14 16 29 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 30 H 0.05 0.90 6.57 -51.93 -0.34 0.56 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.39 10.08 5.77 -40.82 -0.24 9.84 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.46 6.29 -51.93 -0.33 1.13 16 36 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 37 H 0.40 4.35 6.58 -40.82 -0.27 4.08 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.37 7.92 -51.93 -0.41 -0.05 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 47 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -33.82 405.53 -8.79 -42.61 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -8.09 Total: 10.61 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.34 Total: -3.72 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.10 Total: -61.69 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.32 Total: -1.17 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.82 -8.79 -42.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.259 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds