Wall clock time and date at job start Sat Apr 11 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.36936 * 120.00076 * 274.99567 * 4 2 1 6 6 H 1.08002 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00446 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46848 * 90.00614 * 9 7 5 11 11 H 1.48495 * 109.47077 * 210.00433 * 9 7 5 12 12 H 1.48497 * 109.47327 * 330.00624 * 9 7 5 13 13 C 1.52997 * 109.46921 * 240.00379 * 2 1 3 14 14 H 1.09000 * 109.47140 * 175.00145 * 13 2 1 15 15 C 1.53006 * 109.47164 * 295.00093 * 13 2 1 16 16 N 1.46500 * 109.47204 * 55.00018 * 13 2 1 17 17 C 1.34779 * 119.99741 * 155.00342 * 16 13 2 18 18 O 1.21279 * 120.00369 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99762 * 179.97438 * 17 16 13 20 20 C 1.50697 * 109.47045 * 179.97438 * 19 17 16 21 21 C 1.33635 * 122.75243 * 85.02845 * 20 19 17 22 22 S 1.76190 * 107.92884 * 180.02562 * 21 20 19 23 23 C 1.70978 * 90.28114 * 359.97438 * 22 21 20 24 24 C 1.50701 * 124.91447 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47248 * 239.97631 * 24 23 22 26 26 C 1.52998 * 109.47302 * 359.97438 * 24 23 22 27 27 C 1.53002 * 109.47041 * 119.97568 * 24 23 22 28 28 N 1.29023 * 110.16624 * 359.73749 * 23 22 21 29 29 H 1.08998 * 109.47141 * 59.99120 * 1 2 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46964 * 299.99798 * 1 2 3 32 32 H 0.97008 * 120.00184 * 94.99888 * 4 2 1 33 33 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46801 * 180.02562 * 15 13 2 35 35 H 1.09001 * 109.46998 * 299.99705 * 15 13 2 36 36 H 1.09000 * 109.47050 * 59.99996 * 15 13 2 37 37 H 0.96997 * 120.00110 * 334.99611 * 16 13 2 38 38 H 1.08994 * 109.47136 * 300.00021 * 19 17 16 39 39 H 1.09002 * 109.46457 * 59.99935 * 19 17 16 40 40 H 1.08002 * 126.03575 * 359.97438 * 21 20 19 41 41 H 1.08991 * 109.47044 * 60.00036 * 25 24 23 42 42 H 1.09005 * 109.46932 * 180.02562 * 25 24 23 43 43 H 1.08995 * 109.46852 * 299.99827 * 25 24 23 44 44 H 1.09000 * 109.47448 * 59.99929 * 26 24 23 45 45 H 1.09005 * 109.46903 * 180.02562 * 26 24 23 46 46 H 1.09000 * 109.46768 * 299.99188 * 26 24 23 47 47 H 1.09008 * 109.47064 * 59.99993 * 27 24 23 48 48 H 1.08999 * 109.47858 * 179.97438 * 27 24 23 49 49 H 1.09002 * 109.47570 * 300.00393 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5091 8 7 2.9244 -1.9392 3.4500 9 14 2.7893 0.2695 5.1185 10 1 1.5213 0.1781 5.8860 11 1 3.8936 -0.3238 5.9145 12 1 3.0943 1.6948 4.8343 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6276 18 8 3.1467 -0.7857 -3.7063 19 6 1.4900 0.4413 -4.8550 20 6 2.3905 0.1981 -6.0386 21 6 2.3353 -0.9177 -6.7719 22 16 3.5491 -0.7921 -8.0428 23 6 4.0097 0.7488 -7.4623 24 6 5.0913 1.6090 -8.0633 25 6 6.1754 1.8710 -7.0159 26 6 5.7066 0.8892 -9.2650 27 6 4.4901 2.9401 -8.5190 28 7 3.2930 1.0710 -6.4390 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6319 1.1525 33 1 3.2477 -2.3965 4.2420 34 1 1.9989 -2.7093 -2.0779 35 1 2.0698 -2.6550 -0.3004 36 1 0.5488 -2.2723 -1.1422 37 1 0.6117 0.3703 -2.3794 38 1 0.5103 0.0040 -5.0475 39 1 1.3837 1.5141 -4.6940 40 1 1.6656 -1.7499 -6.6130 41 1 6.6037 0.9228 -6.6913 42 1 6.9576 2.4936 -7.4505 43 1 5.7371 2.3838 -6.1598 44 1 4.9344 0.7025 -10.0113 45 1 6.4893 1.5113 -9.6994 46 1 6.1351 -0.0590 -8.9403 47 1 4.0517 3.4529 -7.6628 48 1 5.2724 3.5625 -8.9533 49 1 3.7177 2.7535 -9.2651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674740452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:05 Heat of formation + Delta-G solvation = -20.008374 kcal Electronic energy + Delta-G solvation = -27091.995717 eV Core-core repulsion = 23372.804268 eV Total energy + Delta-G solvation = -3719.191448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45053 -40.49356 -38.46852 -37.63835 -35.58278 -33.69954 -32.68076 -30.95741 -29.81468 -28.90366 -28.33130 -28.18966 -26.19421 -26.01284 -24.83796 -22.18109 -20.90163 -20.58513 -20.25124 -19.47485 -18.47478 -18.25245 -16.93183 -16.69426 -16.62550 -16.08762 -15.95952 -15.67144 -15.36327 -15.17881 -15.08561 -14.79691 -14.59156 -14.21997 -14.08754 -13.96684 -13.56641 -13.30376 -13.10195 -13.09290 -13.02272 -12.91055 -12.81076 -12.64753 -12.62802 -12.42137 -12.21943 -12.13871 -12.01134 -11.97753 -11.89337 -11.67322 -11.59881 -10.96324 -10.95276 -10.53777 -10.28123 -10.08257 -9.65895 -9.04002 -7.94587 -5.23437 -0.21227 0.46218 0.80254 1.46947 1.48690 1.56848 1.65699 1.68094 2.33341 2.58528 3.01730 3.39190 3.65397 3.81416 3.90761 3.95083 3.97273 4.00448 4.07397 4.18522 4.26856 4.32800 4.39150 4.50928 4.60537 4.66337 4.70695 4.72938 4.80257 4.82607 4.88172 4.94811 4.96269 4.97286 4.98501 5.04035 5.12503 5.19781 5.25897 5.27860 5.34126 5.40835 5.49432 5.57308 5.64283 6.27618 6.60283 6.82868 7.30456 7.33997 8.08596 8.31492 9.29020 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002118 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.971990 B =13214.937585 C =13778.600864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.044 0.956 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.285 1.285 11 H -0.298 1.298 12 H -0.270 1.270 13 C 0.151 3.849 14 H 0.049 0.951 15 C -0.147 4.147 16 N -0.705 5.705 17 C 0.514 3.486 18 O -0.583 6.583 19 C -0.060 4.060 20 C 0.068 3.932 21 C -0.262 4.262 22 S 0.148 5.852 23 C 0.048 3.952 24 C 0.007 3.993 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.128 4.128 28 N -0.490 5.490 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.190 0.810 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 7.099 -30.857 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.062 0.938 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.212 1.212 11 H -0.225 1.225 12 H -0.195 1.195 13 C 0.045 3.955 14 H 0.067 0.933 15 C -0.206 4.206 16 N -0.359 5.359 17 C 0.301 3.699 18 O -0.463 6.463 19 C -0.102 4.102 20 C -0.064 4.064 21 C -0.401 4.401 22 S 0.405 5.595 23 C -0.230 4.230 24 C 0.003 3.997 25 C -0.191 4.191 26 C -0.208 4.208 27 C -0.186 4.186 28 N -0.205 5.205 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.255 0.745 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.208 0.792 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.730 6.671 -31.369 32.117 hybrid contribution -0.481 -0.040 2.379 2.427 sum -2.211 6.631 -28.991 29.821 Atomic orbital electron populations 1.22351 0.96271 1.01715 1.01334 1.20540 0.94101 0.94717 0.85043 0.93781 1.42667 1.78688 1.10527 1.05859 1.19609 1.34962 0.94270 0.88082 0.90490 1.25555 1.02945 0.96923 1.01510 1.69815 1.52601 1.10245 1.29410 0.85152 0.76878 0.77974 0.79827 1.21241 1.22523 1.19533 1.20824 0.96981 0.93181 0.84473 0.93303 1.22010 1.02415 0.95293 1.00861 1.45960 1.26308 1.56626 1.07038 1.21019 0.84324 0.79339 0.85210 1.90708 1.24554 1.44786 1.86205 1.20262 0.98672 1.04593 0.86656 1.19732 0.97312 0.90871 0.98479 1.27091 1.07149 1.04067 1.01768 1.83612 1.29506 1.16600 1.29761 1.27516 1.01361 0.97849 0.96296 1.19405 0.90353 0.94377 0.95558 1.21821 0.97686 1.01657 0.97953 1.22028 1.02101 1.00777 0.95943 1.21793 1.01435 0.94250 1.01158 1.65913 1.07003 1.34206 1.13335 0.90157 0.92879 0.93900 0.79016 0.94086 0.93167 0.93254 0.90529 0.74533 0.83422 0.85655 0.79245 0.93720 0.89279 0.93713 0.91105 0.88682 0.92267 0.93206 0.89609 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.01 71.98 0.65 -4.20 16 2 C 0.16 6.30 2.93 44.99 0.13 6.43 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.73 -36.79 5.03 -322.95 -1.63 -38.42 16 5 C -0.24 -13.12 9.93 84.03 0.83 -12.29 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 8 N -0.97 -59.90 13.06 21.65 0.28 -59.61 16 9 Si 0.97 46.46 29.55 68.60 2.03 48.48 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.15 5.29 2.62 44.99 0.12 5.40 16 14 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 15 C -0.15 -5.04 9.00 71.98 0.65 -4.39 16 16 N -0.70 -18.24 4.99 -442.52 -2.21 -20.45 16 17 C 0.51 14.44 7.79 87.66 0.68 15.12 16 18 O -0.58 -22.53 15.70 -3.03 -0.05 -22.58 16 19 C -0.06 -1.15 6.11 29.10 0.18 -0.97 16 20 C 0.07 1.63 5.23 41.52 0.22 1.85 16 21 C -0.26 -5.52 11.14 66.77 0.74 -4.78 16 22 S 0.15 2.75 21.57 -56.49 -1.22 1.54 16 23 C 0.05 1.04 5.78 88.52 0.51 1.55 16 24 C 0.01 0.11 0.99 -52.93 -0.05 0.06 16 25 C -0.13 -2.37 8.45 71.98 0.61 -1.77 16 26 C -0.15 -1.63 7.54 71.98 0.54 -1.09 16 27 C -0.13 -1.73 8.45 71.98 0.61 -1.12 16 28 N -0.49 -12.77 10.51 -179.41 -1.89 -14.66 16 29 H 0.08 1.71 6.29 -2.39 -0.02 1.70 16 30 H 0.05 1.66 6.57 -2.39 -0.02 1.64 16 31 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.38 20.26 5.77 -92.70 -0.54 19.73 16 33 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.96 6.29 -2.39 -0.02 1.94 16 36 H 0.08 2.28 6.57 -2.39 -0.02 2.26 16 37 H 0.42 7.67 6.58 -92.71 -0.61 7.06 16 38 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 45 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.06 0.70 7.92 -2.39 -0.02 0.69 16 47 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -76.25 405.53 2.02 -74.23 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.19 Total: 35.64 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 6.89 Total: -4.17 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -5.44 Total: -133.14 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.22 Total: 1.54 kcal Total: -76.25 2.02 -74.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.219 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds