Wall clock time and date at job start Sat Apr 11 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 5 5 C 1.36936 * 119.99910 * 84.99534 * 4 2 1 6 6 H 1.07996 * 119.99948 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99722 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99641 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00340 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47212 * 89.99907 * 9 7 5 11 11 H 1.48502 * 109.47080 * 209.99958 * 9 7 5 12 12 H 1.48507 * 109.46915 * 329.99961 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 14 14 H 1.09000 * 109.47278 * 184.99561 * 13 2 1 15 15 C 1.53011 * 109.47134 * 64.99887 * 13 2 1 16 16 N 1.46493 * 109.47228 * 304.99898 * 13 2 1 17 17 C 1.34777 * 120.00076 * 204.99484 * 16 13 2 18 18 O 1.21286 * 120.00225 * 0.02562 * 17 16 13 19 19 C 1.50703 * 120.00225 * 179.97438 * 17 16 13 20 20 C 1.50701 * 109.47334 * 180.02562 * 19 17 16 21 21 C 1.33641 * 122.74344 * 85.03116 * 20 19 17 22 22 S 1.76197 * 107.92322 * 180.02562 * 21 20 19 23 23 C 1.70974 * 90.28278 * 359.97438 * 22 21 20 24 24 C 1.50704 * 124.91937 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47061 * 239.97859 * 24 23 22 26 26 C 1.53000 * 109.46807 * 359.97249 * 24 23 22 27 27 C 1.52989 * 109.47198 * 119.97654 * 24 23 22 28 28 N 1.29031 * 110.16568 * 359.73711 * 23 22 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00110 * 265.00363 * 4 2 1 33 33 H 0.96997 * 119.99774 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46554 * 60.00185 * 15 13 2 35 35 H 1.08996 * 109.46870 * 179.97438 * 15 13 2 36 36 H 1.09000 * 109.46772 * 299.99985 * 15 13 2 37 37 H 0.97003 * 120.00363 * 25.00537 * 16 13 2 38 38 H 1.08997 * 109.47734 * 300.01177 * 19 17 16 39 39 H 1.09008 * 109.46225 * 60.01225 * 19 17 16 40 40 H 1.07998 * 126.04085 * 359.97438 * 21 20 19 41 41 H 1.09005 * 109.47212 * 60.00071 * 25 24 23 42 42 H 1.09003 * 109.47221 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47270 * 299.99925 * 25 24 23 44 44 H 1.09011 * 109.46742 * 60.00536 * 26 24 23 45 45 H 1.09005 * 109.47165 * 179.97438 * 26 24 23 46 46 H 1.08996 * 109.47538 * 300.00156 * 26 24 23 47 47 H 1.08998 * 109.47417 * 60.00547 * 27 24 23 48 48 H 1.09003 * 109.46988 * 179.97438 * 27 24 23 49 49 H 1.08997 * 109.47510 * 300.00005 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4241 7 6 2.6112 -0.6620 -3.5093 8 7 2.7373 -0.0053 -4.6430 9 14 3.0542 -2.4748 -3.4258 10 1 1.8564 -3.2923 -3.7452 11 1 4.1294 -2.7673 -4.4075 12 1 3.5292 -2.8058 -2.0582 13 6 2.0401 -0.7212 1.2492 14 1 3.1264 -0.6444 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4560 -0.1037 2.4423 17 6 2.0913 -0.1939 3.6275 18 8 3.1469 -0.7860 3.7062 19 6 1.4908 0.4419 4.8548 20 6 2.3913 0.1985 6.0384 21 6 3.4347 0.9823 6.3261 22 16 4.2077 0.3456 7.7758 23 6 3.0506 -0.9108 7.8513 24 6 3.0126 -1.9864 8.9062 25 6 3.1522 -3.3575 8.2417 26 6 4.1656 -1.7768 9.8899 27 6 1.6819 -1.9170 9.6577 28 7 2.2108 -0.8011 6.8778 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 3.0599 -0.4627 -5.4352 34 1 2.0699 -2.6550 0.3002 35 1 1.9990 -2.7094 2.0777 36 1 0.5489 -2.2724 1.1421 37 1 0.6118 0.3701 2.3794 38 1 1.3851 1.5147 4.6936 39 1 0.5108 0.0051 5.0475 40 1 3.7492 1.8518 5.7682 41 1 4.1004 -3.4069 7.7063 42 1 3.1252 -4.1355 9.0047 43 1 2.3309 -3.5069 7.5408 44 1 4.0661 -0.7999 10.3634 45 1 4.1379 -2.5545 10.6532 46 1 5.1137 -1.8262 9.3545 47 1 0.8605 -2.0664 8.9569 48 1 1.6543 -2.6953 10.4204 49 1 1.5824 -0.9403 10.1311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674740456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:11 Heat of formation + Delta-G solvation = -16.840336 kcal Electronic energy + Delta-G solvation = -27171.751005 eV Core-core repulsion = 23452.696933 eV Total energy + Delta-G solvation = -3719.054072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46388 -40.51948 -38.57773 -37.65276 -35.64706 -33.81022 -32.79529 -31.26258 -30.07428 -28.93122 -28.33255 -28.18746 -26.16295 -25.96305 -24.65622 -22.16397 -20.90785 -20.73951 -20.26126 -19.92982 -18.46772 -18.24539 -17.09012 -16.76691 -16.50536 -16.16119 -15.94464 -15.67347 -15.53468 -15.12116 -15.09313 -14.82598 -14.66208 -14.24727 -14.13895 -14.02079 -13.79840 -13.38624 -13.19732 -13.14998 -13.08876 -12.92904 -12.89560 -12.64359 -12.62697 -12.42410 -12.28690 -12.20106 -11.98142 -11.90676 -11.89285 -11.79599 -11.62343 -11.01328 -10.97665 -10.54937 -10.28892 -10.10754 -9.67043 -9.35828 -8.03407 -5.36690 -0.22031 0.45216 0.79881 1.35966 1.37941 1.44618 1.65350 1.65759 2.32094 2.46252 3.00480 3.28263 3.63663 3.64743 3.77191 3.88654 3.94992 3.97428 4.03295 4.16404 4.25980 4.27215 4.38642 4.50995 4.56435 4.63074 4.66269 4.73010 4.79795 4.82722 4.82863 4.92567 4.94552 4.96097 4.96628 5.01246 5.11952 5.12721 5.23012 5.26703 5.34302 5.40568 5.50038 5.60928 5.77106 6.20440 6.58188 6.81199 7.06049 7.28405 7.81919 7.99501 9.17796 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.002169 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.169872 B =12904.980244 C =13175.512703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.050 0.950 4 N -0.749 5.749 5 C -0.224 4.224 6 H 0.062 0.938 7 C -0.062 4.062 8 N -0.981 5.981 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.258 1.258 13 C 0.147 3.853 14 H 0.058 0.942 15 C -0.155 4.155 16 N -0.705 5.705 17 C 0.516 3.484 18 O -0.582 6.582 19 C -0.061 4.061 20 C 0.069 3.931 21 C -0.265 4.265 22 S 0.146 5.854 23 C 0.049 3.951 24 C 0.007 3.993 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.128 4.128 28 N -0.487 5.487 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.365 0.635 33 H 0.257 0.743 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.416 0.584 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.188 0.812 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.397 -1.115 35.230 35.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 H 0.068 0.932 4 N -0.395 5.395 5 C -0.355 4.355 6 H 0.080 0.920 7 C -0.254 4.254 8 N -0.632 5.632 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.183 1.183 13 C 0.041 3.959 14 H 0.077 0.923 15 C -0.214 4.214 16 N -0.360 5.360 17 C 0.303 3.697 18 O -0.461 6.461 19 C -0.103 4.103 20 C -0.062 4.062 21 C -0.404 4.404 22 S 0.403 5.597 23 C -0.229 4.229 24 C 0.003 3.997 25 C -0.190 4.190 26 C -0.209 4.209 27 C -0.187 4.187 28 N -0.201 5.201 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.200 0.800 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.255 0.745 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.205 0.795 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.197 -1.407 35.698 35.793 hybrid contribution -0.278 -0.528 -1.936 2.026 sum -2.475 -1.936 33.762 33.908 Atomic orbital electron populations 1.22350 0.96002 1.02094 1.01497 1.20512 0.94157 0.95001 0.84222 0.93220 1.42836 1.80141 1.09721 1.06786 1.19009 1.34981 0.94618 0.86929 0.91972 1.25417 1.02479 1.02122 0.95362 1.69863 1.54748 1.37489 1.01092 0.85561 0.77905 0.81470 0.77782 1.20081 1.22353 1.18281 1.20874 0.97560 0.93032 0.84397 0.92342 1.22104 1.02839 0.95401 1.01016 1.45937 1.26365 1.56703 1.06979 1.20979 0.84281 0.79444 0.85036 1.90708 1.24727 1.44546 1.86117 1.20263 0.99007 1.04673 0.86319 1.19729 0.97447 0.91870 0.97200 1.27094 1.01432 1.08391 1.03441 1.83661 1.31604 1.21913 1.22555 1.27530 0.94819 1.01358 0.99190 1.19404 0.98886 0.90564 0.90806 1.21818 1.01302 0.94966 1.00948 1.22034 0.96075 1.03908 0.98911 1.21792 0.94119 1.02910 0.99831 1.65916 1.28752 1.21278 1.04202 0.89943 0.94096 0.92302 0.79977 0.93396 0.92923 0.93152 0.90196 0.74456 0.83768 0.85320 0.79517 0.93708 0.89304 0.93494 0.91237 0.88666 0.92277 0.93060 0.89601 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.01 71.98 0.65 -4.01 16 2 C 0.17 6.02 2.93 44.99 0.13 6.16 16 3 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 4 N -0.75 -34.29 4.84 -322.93 -1.56 -35.85 16 5 C -0.22 -12.59 10.41 84.03 0.87 -11.72 16 6 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 7 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 8 N -0.98 -62.85 13.97 21.65 0.30 -62.54 16 9 Si 0.95 46.01 27.74 68.60 1.90 47.92 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 13 C 0.15 4.66 2.62 45.00 0.12 4.78 16 14 H 0.06 2.22 7.58 -2.39 -0.02 2.21 16 15 C -0.16 -4.75 9.00 71.99 0.65 -4.10 16 16 N -0.71 -16.69 4.99 -442.53 -2.21 -18.89 16 17 C 0.52 13.48 7.79 87.66 0.68 14.16 16 18 O -0.58 -21.13 15.70 -3.05 -0.05 -21.17 16 19 C -0.06 -1.09 6.11 29.10 0.18 -0.91 16 20 C 0.07 1.59 5.23 41.52 0.22 1.81 16 21 C -0.26 -5.50 11.14 66.78 0.74 -4.75 16 22 S 0.15 2.63 21.57 -56.49 -1.22 1.41 16 23 C 0.05 1.01 5.78 88.52 0.51 1.52 16 24 C 0.01 0.11 0.99 -52.93 -0.05 0.05 16 25 C -0.13 -2.10 8.45 71.98 0.61 -1.49 16 26 C -0.15 -1.50 7.54 71.98 0.54 -0.96 16 27 C -0.13 -1.56 8.45 71.98 0.61 -0.95 16 28 N -0.49 -11.90 10.51 -179.40 -1.89 -13.78 16 29 H 0.08 1.64 6.29 -2.39 -0.02 1.62 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.66 6.57 -2.39 -0.02 1.65 16 32 H 0.37 16.38 3.63 -92.71 -0.34 16.05 16 33 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.05 1.75 6.29 -2.39 -0.02 1.74 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 2.11 6.57 -2.39 -0.02 2.09 16 37 H 0.42 6.90 6.58 -92.71 -0.61 6.29 16 38 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.19 3.17 8.06 -2.91 -0.02 3.14 16 41 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.07 0.61 7.92 -2.38 -0.02 0.59 16 45 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.06 0.65 7.92 -2.39 -0.02 0.63 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.70 402.41 2.16 -75.54 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.05 Total: 31.00 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.93 Total: -3.62 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -5.35 Total: -131.07 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.92 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.22 Total: 1.41 kcal Total: -77.70 2.16 -75.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.699 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds