Wall clock time and date at job start Sat Apr 11 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47391 * 2 1 4 4 N 1.46905 * 109.46574 * 119.99408 * 2 1 3 5 5 C 1.46902 * 111.00149 * 274.99680 * 4 2 1 6 6 C 1.50696 * 109.47303 * 180.02562 * 5 4 2 7 7 O 1.21298 * 120.00086 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00102 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00021 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99774 * 0.02562 * 9 8 6 11 11 C 1.38944 * 120.00036 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00026 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00185 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47153 * 89.99898 * 13 11 9 15 15 H 1.48503 * 109.47375 * 210.00236 * 13 11 9 16 16 H 1.48504 * 109.46913 * 330.00173 * 13 11 9 17 17 C 1.52999 * 109.47264 * 239.98972 * 2 1 3 18 18 H 1.08996 * 109.46929 * 174.99663 * 17 2 1 19 19 C 1.52997 * 109.47317 * 295.00560 * 17 2 1 20 20 N 1.46506 * 109.46684 * 55.00616 * 17 2 1 21 21 C 1.34775 * 119.99693 * 155.00124 * 20 17 2 22 22 O 1.21274 * 120.00425 * 359.97438 * 21 20 17 23 23 C 1.50706 * 119.99541 * 179.97438 * 21 20 17 24 24 C 1.53000 * 109.46655 * 179.97438 * 23 21 20 25 25 N 1.46506 * 109.46808 * 180.02562 * 24 23 21 26 26 C 1.34596 * 126.44033 * 125.00280 * 25 24 23 27 27 N 1.31070 * 106.68071 * 180.02562 * 26 25 24 28 28 N 1.28844 * 107.98930 * 359.97438 * 27 26 25 29 29 N 1.28743 * 109.39841 * 359.74039 * 28 27 26 30 30 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46897 * 300.00814 * 1 2 3 32 32 H 1.08997 * 109.46584 * 60.00196 * 1 2 3 33 33 H 1.00894 * 111.00174 * 38.95831 * 4 2 1 34 34 H 1.09006 * 109.47199 * 300.00842 * 5 4 2 35 35 H 1.09005 * 109.46939 * 60.00542 * 5 4 2 36 36 H 0.96997 * 119.99560 * 359.97438 * 8 6 5 37 37 H 0.97000 * 120.00060 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47153 * 299.99641 * 19 17 2 39 39 H 1.09001 * 109.46832 * 179.97438 * 19 17 2 40 40 H 1.09004 * 109.47261 * 59.99813 * 19 17 2 41 41 H 0.97000 * 120.00117 * 334.99772 * 20 17 2 42 42 H 1.09002 * 109.46644 * 299.99282 * 23 21 20 43 43 H 1.08999 * 109.46969 * 59.99809 * 23 21 20 44 44 H 1.08993 * 109.47105 * 299.99335 * 24 23 21 45 45 H 1.08999 * 109.47446 * 60.00274 * 24 23 21 46 46 H 1.08003 * 126.65912 * 359.95439 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0824 0.2228 2.3470 6 6 2.5883 -0.5212 3.5559 7 8 2.8685 -1.6982 3.4703 8 7 2.7285 0.1210 4.7325 9 6 3.1882 -0.5560 5.8325 10 1 3.4385 -1.6038 5.7560 11 6 3.3332 0.1062 7.0453 12 7 3.0292 1.3813 7.1382 13 14 3.9603 -0.8160 8.5439 14 1 5.4413 -0.7219 8.5990 15 1 3.3801 -0.2168 9.7725 16 1 3.5580 -2.2425 8.4514 17 6 2.0401 -0.7215 -1.2491 18 1 3.1264 -0.6445 -1.2950 19 6 1.6352 -2.1956 -1.1877 20 7 1.4560 -0.1039 -2.4423 21 6 2.0914 -0.1942 -3.6274 22 8 3.1469 -0.7863 -3.7060 23 6 1.4903 0.4406 -4.8550 24 6 2.4047 0.1935 -6.0565 25 7 1.8206 0.8111 -7.2498 26 6 2.4183 1.7016 -8.0630 27 7 1.5513 1.9956 -9.0010 28 7 0.4773 1.3203 -8.7760 29 7 0.6387 0.5991 -7.7217 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.4495 -1.4978 1.4102 34 1 2.7588 1.0464 2.1182 35 1 1.0870 0.6165 2.5526 36 1 2.5040 1.0622 4.8010 37 1 3.1300 1.8435 7.9851 38 1 2.0698 -2.6551 -0.2999 39 1 1.9983 -2.7094 -2.0778 40 1 0.5489 -2.2725 -1.1418 41 1 0.6119 0.3699 -2.3794 42 1 0.5106 0.0031 -5.0474 43 1 1.3840 1.5134 -4.6942 44 1 3.3841 0.6312 -5.8638 45 1 2.5114 -0.8793 -6.2175 46 1 3.4178 2.0980 -7.9616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674746919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:19 Heat of formation + Delta-G solvation = 47.417773 kcal Electronic energy + Delta-G solvation = -28204.159218 eV Core-core repulsion = 23973.891123 eV Total energy + Delta-G solvation = -4230.268094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.63634 -40.49126 -38.64589 -37.60498 -36.49961 -34.67053 -33.87560 -33.01157 -32.30257 -31.32324 -30.77506 -29.21547 -26.61328 -26.39512 -24.73500 -24.29626 -23.84681 -22.86149 -20.92102 -20.02146 -19.39276 -18.64016 -17.98337 -17.60152 -17.19330 -16.54439 -16.27116 -16.12646 -15.93988 -15.62864 -14.83277 -14.74597 -14.54443 -14.26592 -13.97237 -13.93490 -13.64596 -13.41196 -13.33274 -12.97443 -12.64945 -12.44621 -12.36360 -12.25472 -12.16631 -12.01592 -11.63668 -11.60403 -11.49477 -11.38722 -11.11562 -11.07822 -10.96896 -10.82395 -10.42956 -10.35028 -10.26060 -9.55521 -9.45375 -8.55218 -8.16954 -8.01148 -6.46373 -3.87333 0.75726 1.39871 1.79918 2.12739 2.69706 3.14707 3.23785 3.29361 3.59719 3.75310 3.84842 3.87893 4.02924 4.19494 4.23694 4.27579 4.52262 4.61117 4.66831 4.73535 4.91414 4.97881 4.98460 5.09835 5.20408 5.22291 5.23740 5.25880 5.49118 5.56555 5.61983 5.64234 5.75197 5.82865 5.89324 5.95368 6.17627 6.21306 6.28476 7.00324 7.09826 7.50881 7.51861 7.73649 8.01255 8.13177 8.55860 9.13162 9.48902 9.99993 10.71231 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.001498 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.196474 B =18690.989567 C =18815.806804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 H 0.083 0.917 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.439 3.561 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.153 3.847 18 H 0.098 0.902 19 C -0.164 4.164 20 N -0.720 5.720 21 C 0.521 3.479 22 O -0.537 6.537 23 C -0.159 4.159 24 C 0.131 3.869 25 N -0.309 5.309 26 C 0.163 3.837 27 N -0.309 5.309 28 N -0.076 5.076 29 N -0.093 5.093 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.354 0.646 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.399 0.601 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 3.149 -24.042 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.034 4.034 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.467 6.467 8 N -0.199 5.199 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.049 3.951 18 H 0.116 0.884 19 C -0.222 4.222 20 N -0.373 5.373 21 C 0.306 3.694 22 O -0.414 6.414 23 C -0.200 4.200 24 C 0.009 3.991 25 N -0.111 5.111 26 C -0.136 4.136 27 N -0.157 5.157 28 N -0.070 5.070 29 N -0.079 5.079 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.235 0.765 42 H 0.132 0.868 43 H 0.123 0.877 44 H 0.143 0.857 45 H 0.135 0.865 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.120 2.026 -24.770 25.192 hybrid contribution -0.321 0.679 1.751 1.905 sum -4.441 2.705 -23.019 23.599 Atomic orbital electron populations 1.22629 0.97338 1.02818 1.02100 1.21725 0.92632 0.98177 0.90855 0.89926 1.60019 1.57682 1.09134 1.02261 1.21705 0.99984 0.95651 0.90770 1.19776 0.85326 0.88257 0.84158 1.90532 1.55347 1.16239 1.84586 1.41857 1.57678 1.12452 1.07929 1.19710 1.40055 0.96490 0.86739 0.87882 1.25259 0.97566 0.95774 0.99269 1.69608 1.48550 1.08875 1.27237 0.85855 0.78855 0.79486 0.80081 1.20361 1.20930 1.19408 1.20956 0.99538 0.92562 0.82082 0.88358 1.22180 1.01193 0.95460 1.03358 1.46201 1.25857 1.56780 1.08453 1.20040 0.84859 0.80214 0.84288 1.90774 1.22311 1.42770 1.85500 1.21915 1.01591 1.04047 0.92400 1.22010 0.97049 1.01265 0.78757 1.48834 1.10554 1.29723 1.22020 1.27820 1.03000 0.93592 0.89160 1.75037 0.98300 1.20694 1.21646 1.78678 1.16697 1.04168 1.07506 1.78886 1.00490 1.20067 1.08491 0.91538 0.91858 0.92553 0.82572 0.89569 0.93731 0.77484 0.91852 0.89833 0.92526 0.92777 0.76474 0.86841 0.87747 0.85695 0.86501 0.74785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 8.68 37.16 0.32 -1.16 16 2 C 0.08 0.76 2.64 -67.71 -0.18 0.58 16 3 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 4 N -0.66 -9.25 5.23 -107.98 -0.56 -9.81 16 5 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 6 C 0.44 9.89 7.82 -10.99 -0.09 9.81 16 7 O -0.58 -15.24 15.78 5.54 0.09 -15.15 16 8 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 9 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 10 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 13 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.15 1.46 2.63 -67.93 -0.18 1.28 16 18 H 0.10 1.20 7.58 -51.93 -0.39 0.81 16 19 C -0.16 -1.64 8.86 37.16 0.33 -1.31 16 20 N -0.72 -4.76 4.99 -53.80 -0.27 -5.03 16 21 C 0.52 3.64 7.79 -10.98 -0.09 3.56 16 22 O -0.54 -5.76 15.64 5.56 0.09 -5.68 16 23 C -0.16 -0.59 5.84 -27.88 -0.16 -0.75 16 24 C 0.13 0.46 5.77 -4.04 -0.02 0.44 16 25 N -0.31 -1.76 3.44 -62.55 -0.22 -1.98 16 26 C 0.16 0.84 12.79 -90.39 -1.16 -0.32 16 27 N -0.31 -2.90 12.36 29.59 0.37 -2.53 16 28 N -0.08 -0.84 13.43 60.35 0.81 -0.03 16 29 N -0.09 -0.84 13.08 60.35 0.79 -0.05 16 30 H 0.07 0.53 6.55 -51.93 -0.34 0.19 16 31 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 32 H 0.06 0.30 6.29 -51.93 -0.33 -0.03 16 33 H 0.35 5.19 7.39 -39.30 -0.29 4.90 16 34 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 35 H 0.04 0.63 7.44 -51.93 -0.39 0.25 16 36 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.08 0.99 7.13 -51.93 -0.37 0.62 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 41 H 0.40 1.70 6.58 -40.82 -0.27 1.43 16 42 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.12 0.21 8.04 -51.93 -0.42 -0.21 16 45 H 0.12 0.46 8.10 -51.93 -0.42 0.04 16 46 H 0.24 0.00 8.06 -52.48 -0.42 -0.43 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -35.64 387.94 -5.20 -40.84 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.29 Total: 9.95 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.49 Total: 5.09 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 1.58 Total: -56.53 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.17 Total: -20.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.64 -5.20 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674746919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.258 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds