Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47391 * 2 1 4 4 N 1.46905 * 109.46574 * 119.99408 * 2 1 3 5 5 C 1.46902 * 111.00149 * 274.99680 * 4 2 1 6 6 C 1.50696 * 109.47303 * 180.02562 * 5 4 2 7 7 O 1.21298 * 120.00086 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00102 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00021 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99774 * 0.02562 * 9 8 6 11 11 C 1.38944 * 120.00036 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00026 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00185 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47153 * 89.99898 * 13 11 9 15 15 H 1.48503 * 109.47375 * 210.00236 * 13 11 9 16 16 H 1.48504 * 109.46913 * 330.00173 * 13 11 9 17 17 C 1.52999 * 109.47264 * 239.98972 * 2 1 3 18 18 H 1.08996 * 109.46929 * 174.99663 * 17 2 1 19 19 C 1.52997 * 109.47317 * 295.00560 * 17 2 1 20 20 N 1.46506 * 109.46684 * 55.00616 * 17 2 1 21 21 C 1.34775 * 119.99693 * 155.00124 * 20 17 2 22 22 O 1.21274 * 120.00425 * 359.97438 * 21 20 17 23 23 C 1.50706 * 119.99541 * 179.97438 * 21 20 17 24 24 C 1.53000 * 109.46655 * 179.97438 * 23 21 20 25 25 N 1.46506 * 109.46808 * 180.02562 * 24 23 21 26 26 C 1.34596 * 126.44033 * 125.00280 * 25 24 23 27 27 N 1.31070 * 106.68071 * 180.02562 * 26 25 24 28 28 N 1.28844 * 107.98930 * 359.97438 * 27 26 25 29 29 N 1.28743 * 109.39841 * 359.74039 * 28 27 26 30 30 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46897 * 300.00814 * 1 2 3 32 32 H 1.08997 * 109.46584 * 60.00196 * 1 2 3 33 33 H 1.00894 * 111.00174 * 38.95831 * 4 2 1 34 34 H 1.09006 * 109.47199 * 300.00842 * 5 4 2 35 35 H 1.09005 * 109.46939 * 60.00542 * 5 4 2 36 36 H 0.96997 * 119.99560 * 359.97438 * 8 6 5 37 37 H 0.97000 * 120.00060 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47153 * 299.99641 * 19 17 2 39 39 H 1.09001 * 109.46832 * 179.97438 * 19 17 2 40 40 H 1.09004 * 109.47261 * 59.99813 * 19 17 2 41 41 H 0.97000 * 120.00117 * 334.99772 * 20 17 2 42 42 H 1.09002 * 109.46644 * 299.99282 * 23 21 20 43 43 H 1.08999 * 109.46969 * 59.99809 * 23 21 20 44 44 H 1.08993 * 109.47105 * 299.99335 * 24 23 21 45 45 H 1.08999 * 109.47446 * 60.00274 * 24 23 21 46 46 H 1.08003 * 126.65912 * 359.95439 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0824 0.2228 2.3470 6 6 2.5883 -0.5212 3.5559 7 8 2.8685 -1.6982 3.4703 8 7 2.7285 0.1210 4.7325 9 6 3.1882 -0.5560 5.8325 10 1 3.4385 -1.6038 5.7560 11 6 3.3332 0.1062 7.0453 12 7 3.0292 1.3813 7.1382 13 14 3.9603 -0.8160 8.5439 14 1 5.4413 -0.7219 8.5990 15 1 3.3801 -0.2168 9.7725 16 1 3.5580 -2.2425 8.4514 17 6 2.0401 -0.7215 -1.2491 18 1 3.1264 -0.6445 -1.2950 19 6 1.6352 -2.1956 -1.1877 20 7 1.4560 -0.1039 -2.4423 21 6 2.0914 -0.1942 -3.6274 22 8 3.1469 -0.7863 -3.7060 23 6 1.4903 0.4406 -4.8550 24 6 2.4047 0.1935 -6.0565 25 7 1.8206 0.8111 -7.2498 26 6 2.4183 1.7016 -8.0630 27 7 1.5513 1.9956 -9.0010 28 7 0.4773 1.3203 -8.7760 29 7 0.6387 0.5991 -7.7217 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.4495 -1.4978 1.4102 34 1 2.7588 1.0464 2.1182 35 1 1.0870 0.6165 2.5526 36 1 2.5040 1.0622 4.8010 37 1 3.1300 1.8435 7.9851 38 1 2.0698 -2.6551 -0.2999 39 1 1.9983 -2.7094 -2.0778 40 1 0.5489 -2.2725 -1.1418 41 1 0.6119 0.3699 -2.3794 42 1 0.5106 0.0031 -5.0474 43 1 1.3840 1.5134 -4.6942 44 1 3.3841 0.6312 -5.8638 45 1 2.5114 -0.8793 -6.2175 46 1 3.4178 2.0980 -7.9616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674746919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = 18.607680 kcal Electronic energy + Delta-G solvation = -28205.408517 eV Core-core repulsion = 23973.891123 eV Total energy + Delta-G solvation = -4231.517394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.16482 -41.14076 -40.18292 -38.67790 -37.02022 -36.04852 -35.35614 -33.55220 -33.28218 -32.86087 -31.61491 -30.00879 -27.99227 -26.99518 -26.00910 -25.03906 -24.77556 -23.41340 -21.50825 -21.14906 -20.77609 -19.92621 -19.09396 -18.14607 -17.94378 -17.47499 -17.13651 -16.86249 -16.69754 -16.61894 -16.38366 -15.98594 -15.63402 -15.28883 -15.12058 -14.78969 -14.69211 -14.21952 -14.09104 -13.86206 -13.59144 -13.48526 -13.32974 -13.17867 -13.14156 -13.03528 -12.86964 -12.55501 -12.51325 -12.41160 -12.19149 -12.12158 -11.87927 -11.84821 -11.79947 -11.50014 -11.35569 -10.99276 -10.35584 -10.11022 -10.00553 -9.30054 -8.46373 -5.94783 0.28299 1.00954 1.23774 1.38278 1.42469 1.54591 1.57936 2.06702 2.10215 2.30715 2.99860 3.21395 3.25969 3.48380 3.55854 3.56247 3.72719 3.84382 3.89712 3.93318 4.24302 4.28515 4.30910 4.37328 4.46747 4.47600 4.49875 4.56675 4.63623 4.66778 4.75485 4.82750 4.87843 4.98001 5.05351 5.24303 5.25962 5.41616 5.43665 5.51076 5.90015 6.10906 6.41083 6.50921 6.61018 7.13618 7.21057 7.57442 7.57546 8.13028 8.70836 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.001498 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.196474 B =18690.989567 C =18815.806804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.092 0.908 4 N -0.675 5.675 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.624 6.624 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.273 1.273 17 C 0.162 3.838 18 H 0.069 0.931 19 C -0.158 4.158 20 N -0.709 5.709 21 C 0.523 3.477 22 O -0.576 6.576 23 C -0.146 4.146 24 C 0.128 3.872 25 N -0.302 5.302 26 C 0.182 3.818 27 N -0.346 5.346 28 N -0.114 5.114 29 N -0.109 5.109 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.348 0.652 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.149 0.851 45 H 0.112 0.888 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 4.580 -24.494 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.028 4.028 3 H 0.110 0.890 4 N -0.308 5.308 5 C -0.064 4.064 6 C 0.224 3.776 7 O -0.510 6.510 8 N -0.211 5.211 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.056 3.944 18 H 0.088 0.912 19 C -0.216 4.216 20 N -0.363 5.363 21 C 0.309 3.691 22 O -0.456 6.456 23 C -0.187 4.187 24 C 0.008 3.992 25 N -0.104 5.104 26 C -0.116 4.116 27 N -0.194 5.194 28 N -0.108 5.108 29 N -0.096 5.096 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.168 0.832 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.253 0.747 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.130 0.870 46 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -4.472 3.499 -25.241 25.872 hybrid contribution -0.165 0.200 1.855 1.873 sum -4.637 3.699 -23.386 24.126 Atomic orbital electron populations 1.22571 0.95208 1.03157 1.03444 1.21741 0.94241 0.97975 0.88825 0.88999 1.59971 1.58851 1.09207 1.02805 1.21538 1.01261 0.95203 0.88428 1.20945 0.83415 0.88037 0.85203 1.90501 1.56640 1.18407 1.85468 1.41925 1.58329 1.12616 1.08181 1.19661 1.42182 0.95974 0.88591 0.90391 1.25991 0.97216 0.96597 1.01299 1.69662 1.48592 1.09635 1.28132 0.84958 0.78452 0.78060 0.77055 1.19787 1.19546 1.19815 1.20621 0.98057 0.92440 0.83263 0.91249 1.22097 1.02050 0.95698 1.01747 1.46018 1.26298 1.56481 1.07516 1.20539 0.84183 0.79385 0.84949 1.90769 1.24208 1.44522 1.86083 1.21831 1.01366 1.04957 0.90524 1.22201 0.97874 1.01243 0.77860 1.48947 1.09743 1.29489 1.22256 1.28686 1.03759 0.91875 0.87280 1.74955 0.98935 1.21871 1.23685 1.78654 1.18024 1.05442 1.08677 1.78805 1.02112 1.20248 1.08445 0.91734 0.92250 0.89472 0.83200 0.87850 0.91137 0.76949 0.91332 0.92110 0.93470 0.91077 0.74696 0.86278 0.85611 0.83270 0.86970 0.69988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 8.68 71.98 0.62 -1.70 16 2 C 0.08 1.46 2.64 44.92 0.12 1.57 16 3 H 0.09 1.49 7.80 -2.39 -0.02 1.47 16 4 N -0.68 -18.46 5.23 -495.55 -2.59 -21.06 16 5 C 0.07 2.09 5.96 85.56 0.51 2.60 16 6 C 0.44 19.85 7.82 87.66 0.69 20.53 16 7 O -0.62 -33.54 15.78 -3.08 -0.05 -33.59 16 8 N -0.57 -28.47 5.29 -306.98 -1.62 -30.09 16 9 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 10 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 11 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 12 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 13 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 C 0.16 2.91 2.63 44.99 0.12 3.02 16 18 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 19 C -0.16 -3.11 8.86 71.98 0.64 -2.47 16 20 N -0.71 -7.70 4.99 -442.53 -2.21 -9.91 16 21 C 0.52 6.25 7.79 87.66 0.68 6.93 16 22 O -0.58 -11.80 15.64 -3.01 -0.05 -11.84 16 23 C -0.15 -0.67 5.84 29.85 0.17 -0.49 16 24 C 0.13 0.58 5.77 86.38 0.50 1.08 16 25 N -0.30 -2.78 3.44 -351.82 -1.21 -3.99 16 26 C 0.18 1.41 12.79 180.27 2.31 3.72 16 27 N -0.35 -6.16 12.36 -60.29 -0.75 -6.90 16 28 N -0.11 -2.47 13.43 37.01 0.50 -1.97 16 29 N -0.11 -1.86 13.08 37.02 0.48 -1.37 16 30 H 0.06 0.87 6.55 -2.39 -0.02 0.85 16 31 H 0.06 0.84 7.45 -2.39 -0.02 0.82 16 32 H 0.09 0.56 6.29 -2.39 -0.02 0.55 16 33 H 0.35 10.16 7.39 -89.70 -0.66 9.50 16 34 H 0.10 2.86 8.06 -2.38 -0.02 2.84 16 35 H 0.07 1.83 7.44 -2.38 -0.02 1.81 16 36 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 37 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.06 1.48 7.13 -2.39 -0.02 1.47 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.13 6.57 -2.38 -0.02 1.12 16 41 H 0.41 2.05 6.58 -92.71 -0.61 1.44 16 42 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.15 0.00 8.04 -2.39 -0.02 -0.02 16 45 H 0.11 0.69 8.10 -2.39 -0.02 0.67 16 46 H 0.28 -1.21 8.06 -2.91 -0.02 -1.23 16 Total: -1.00 -81.28 387.94 1.51 -79.77 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.95 Total: 28.11 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.64 Total: 16.82 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -7.11 Total: -123.55 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.10 Total: -45.44 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -81.28 1.51 -79.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674746919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.379 kcal (2) G-P(sol) polarization free energy of solvation -81.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds