Wall clock time and date at job start Sat Apr 11 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47279 * 179.97438 * 8 6 5 10 10 N 1.46501 * 109.47384 * 180.02562 * 9 8 6 11 11 C 1.34600 * 126.44158 * 124.99985 * 10 9 8 12 12 N 1.31070 * 106.67640 * 180.02562 * 11 10 9 13 13 N 1.28835 * 107.99295 * 359.97438 * 12 11 10 14 14 N 1.28736 * 109.39730 * 359.73589 * 13 12 11 15 15 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 16 16 C 1.46892 * 111.00257 * 58.95254 * 15 2 1 17 17 C 1.46903 * 110.99611 * 294.99904 * 15 2 1 18 18 C 1.50701 * 109.46971 * 190.00257 * 17 15 2 19 19 O 1.21297 * 119.99921 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00299 * 180.02562 * 18 17 15 21 21 C 1.37095 * 120.00019 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00453 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99631 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00204 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99640 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47314 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47054 * 120.00196 * 25 23 21 28 28 H 1.48498 * 109.46778 * 239.99706 * 25 23 21 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 34 34 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 36 36 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 37 37 H 1.09001 * 109.47272 * 299.99955 * 9 8 6 38 38 H 1.08994 * 109.47445 * 59.99960 * 9 8 6 39 39 H 1.07996 * 126.65564 * 0.03327 * 11 10 9 40 40 H 1.08999 * 109.47422 * 60.00010 * 16 15 2 41 41 H 1.09003 * 109.47298 * 179.97438 * 16 15 2 42 42 H 1.09003 * 109.47276 * 300.00264 * 16 15 2 43 43 H 1.09003 * 109.47263 * 309.99689 * 17 15 2 44 44 H 1.09002 * 109.47178 * 70.00290 * 17 15 2 45 45 H 0.97006 * 119.99750 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00650 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 6 6.1851 -2.2582 -3.3796 10 7 7.6450 -2.3644 -3.3203 11 6 8.3690 -3.4951 -3.4155 12 7 9.6280 -3.1454 -3.3129 13 7 9.6749 -1.8667 -3.1630 14 7 8.4787 -1.3909 -3.1730 15 7 2.0196 -0.6925 1.1994 16 6 1.5283 -2.0761 1.2460 17 6 1.6486 0.0392 2.4180 18 6 2.3678 -0.5571 3.6006 19 8 3.1155 -1.4992 3.4437 20 7 2.1794 -0.0442 4.8326 21 6 2.8333 -0.5870 5.9084 22 1 3.4996 -1.4253 5.7686 23 6 2.6394 -0.0578 7.1786 24 7 1.8298 0.9632 7.3484 25 14 3.5309 -0.7969 8.6443 26 1 4.3779 -1.9286 8.1893 27 1 4.3862 0.2390 9.2773 28 1 2.5367 -1.2889 9.6316 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6055 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.9824 -0.4628 -0.4315 35 1 6.1100 -0.5386 -2.0837 36 1 5.9630 -2.1006 -1.2429 37 1 5.7502 -3.2566 -3.4257 38 1 5.8971 -1.6951 -4.2672 39 1 7.9866 -4.4961 -3.5504 40 1 1.8762 -2.6151 0.3648 41 1 1.9060 -2.5658 2.1436 42 1 0.4384 -2.0742 1.2639 43 1 1.9297 1.0870 2.3125 44 1 0.5721 -0.0345 2.5725 45 1 1.5812 0.7091 4.9581 46 1 1.6942 1.3325 8.2351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675019594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:35 Heat of formation + Delta-G solvation = 57.123854 kcal Electronic energy + Delta-G solvation = -28902.788403 eV Core-core repulsion = 24672.941196 eV Total energy + Delta-G solvation = -4229.847207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.46425 -40.20891 -39.03391 -37.47058 -36.37588 -34.54634 -33.90468 -32.83046 -32.02336 -31.33203 -30.91901 -28.07548 -27.21516 -25.64561 -25.27538 -24.12571 -23.85754 -22.68247 -20.61684 -20.04776 -19.16438 -18.37408 -17.91008 -17.46003 -16.86698 -16.66433 -16.43919 -16.02959 -15.96974 -15.46282 -14.97568 -14.76500 -14.35170 -14.15257 -14.10376 -13.63700 -13.46114 -13.32721 -13.21478 -13.07704 -12.76151 -12.45031 -12.37731 -12.07313 -11.88166 -11.86464 -11.52587 -11.46635 -11.33191 -11.30006 -11.20970 -11.02691 -10.86438 -10.65080 -10.39538 -10.28963 -10.22992 -9.55318 -9.24458 -8.57606 -8.06585 -7.96720 -6.48486 -3.89455 0.93177 1.58002 1.97146 2.31378 2.94921 3.11413 3.22821 3.29308 3.77817 3.81263 3.84759 3.92275 4.09120 4.17495 4.42578 4.46660 4.55433 4.73213 4.85536 4.94166 5.02122 5.10205 5.12672 5.18076 5.20193 5.32523 5.37790 5.40924 5.45636 5.60409 5.66672 5.79139 5.79524 5.80548 5.88254 6.04836 6.18777 6.23289 6.45224 7.09925 7.21946 7.30228 7.48952 7.93084 7.99322 8.30458 8.54002 9.11377 9.47038 9.98107 10.69142 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.002306 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.407912 B =12139.492900 C =14439.520669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.089 0.911 4 C 0.131 3.869 5 N -0.707 5.707 6 C 0.522 3.478 7 O -0.554 6.554 8 C -0.159 4.159 9 C 0.132 3.868 10 N -0.309 5.309 11 C 0.162 3.838 12 N -0.309 5.309 13 N -0.076 5.076 14 N -0.091 5.091 15 N -0.511 5.511 16 C 0.016 3.984 17 C 0.044 3.956 18 C 0.442 3.558 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.415 0.585 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.235 0.765 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.021 0.979 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -3.228 -20.265 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.047 4.047 3 H 0.107 0.893 4 C 0.006 3.994 5 N -0.358 5.358 6 C 0.307 3.693 7 O -0.433 6.433 8 C -0.200 4.200 9 C 0.011 3.989 10 N -0.111 5.111 11 C -0.137 4.137 12 N -0.157 5.157 13 N -0.071 5.071 14 N -0.078 5.078 15 N -0.235 5.235 16 C -0.132 4.132 17 C -0.087 4.087 18 C 0.228 3.772 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.039 0.961 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.057 -3.172 -20.712 20.980 hybrid contribution -1.679 -0.184 1.309 2.137 sum -0.622 -3.356 -19.403 19.701 Atomic orbital electron populations 1.22405 0.96492 1.02875 1.02801 1.22060 0.93610 0.98706 0.90326 0.89252 1.21432 0.79794 1.01125 0.97005 1.45825 1.08013 1.58589 1.23360 1.20033 0.88773 0.77970 0.82568 1.90724 1.70339 1.48668 1.33561 1.21894 0.94083 1.04824 0.99204 1.21986 0.70516 1.05605 1.00778 1.48827 1.10685 1.05346 1.46225 1.27790 0.87831 0.95847 1.02183 1.75019 1.16728 1.06067 1.17915 1.78667 1.11829 1.01747 1.14816 1.78883 0.95712 1.15628 1.17569 1.61832 1.58900 1.02522 1.00242 1.22601 0.96855 0.89409 1.04296 1.21881 0.98202 0.98414 0.90192 1.19715 0.86760 0.86969 0.83772 1.90484 1.40886 1.30232 1.84748 1.41881 1.41419 1.31125 1.05535 1.19729 1.23436 1.14819 0.84848 0.87871 1.25267 0.97284 0.96298 0.99073 1.69609 1.36624 1.23820 1.24156 0.85812 0.79036 0.78976 0.80600 1.19211 1.20698 1.20760 0.91797 0.91574 0.91869 0.91175 0.91031 0.74799 0.86805 0.87366 0.85874 0.86705 0.74857 0.92195 0.88578 0.96101 0.89441 0.93133 0.77519 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.50 37.16 0.32 -1.34 16 2 C 0.06 0.61 2.50 -67.71 -0.17 0.45 16 3 H 0.09 0.82 8.03 -51.93 -0.42 0.41 16 4 C 0.13 1.23 4.69 -4.04 -0.02 1.21 16 5 N -0.71 -6.63 5.39 -60.30 -0.32 -6.96 16 6 C 0.52 4.77 7.83 -10.99 -0.09 4.69 16 7 O -0.55 -6.50 15.98 5.56 0.09 -6.41 16 8 C -0.16 -1.06 5.84 -27.89 -0.16 -1.22 16 9 C 0.13 0.74 5.77 -4.04 -0.02 0.71 16 10 N -0.31 -2.43 3.44 -62.56 -0.22 -2.64 16 11 C 0.16 1.17 12.79 -90.39 -1.16 0.01 16 12 N -0.31 -3.53 12.36 29.59 0.37 -3.17 16 13 N -0.08 -1.00 13.43 60.35 0.81 -0.19 16 14 N -0.09 -1.03 13.08 60.35 0.79 -0.24 16 15 N -0.51 -6.88 3.93 -236.33 -0.93 -7.81 16 16 C 0.02 0.23 8.45 60.06 0.51 0.73 16 17 C 0.04 0.69 4.89 -4.97 -0.02 0.66 16 18 C 0.44 9.58 7.48 -10.98 -0.08 9.49 16 19 O -0.58 -14.35 13.91 5.54 0.08 -14.27 16 20 N -0.56 -13.48 5.29 -10.96 -0.06 -13.54 16 21 C -0.30 -7.99 9.68 -14.93 -0.14 -8.14 16 22 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 25 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 30 H 0.07 0.62 6.75 -51.93 -0.35 0.27 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.73 6.70 -51.93 -0.35 0.38 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.42 3.97 8.14 -40.82 -0.33 3.63 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.12 0.44 8.04 -51.93 -0.42 0.02 16 38 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.24 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 41 H 0.10 1.73 5.82 -51.93 -0.30 1.43 16 42 H 0.02 0.27 6.28 -51.93 -0.33 -0.06 16 43 H 0.09 1.22 8.00 -51.93 -0.42 0.80 16 44 H 0.05 0.73 6.94 -51.93 -0.36 0.37 16 45 H 0.39 9.00 7.90 -40.82 -0.32 8.68 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -34.25 384.26 -5.35 -39.59 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.30 Total: 9.70 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.14 Total: 7.74 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 1.16 Total: -57.62 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.17 Total: -20.68 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.25 -5.35 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675019594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.716 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds