Wall clock time and date at job start Sat Apr 11 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49578 * 2 1 4 4 C 1.53043 * 109.52389 * 239.92033 * 2 1 3 5 5 C 1.53045 * 109.53425 * 301.39815 * 4 2 1 6 6 C 1.53193 * 109.31251 * 298.63129 * 5 4 2 7 7 N 1.46962 * 108.88643 * 54.55833 * 6 5 4 8 8 C 1.34780 * 120.65108 * 126.46681 * 7 6 5 9 9 O 1.21286 * 119.99725 * 185.58963 * 8 7 6 10 10 C 1.50700 * 120.00089 * 5.59117 * 8 7 6 11 11 S 1.81398 * 109.47080 * 179.97438 * 10 8 7 12 12 C 1.81403 * 102.99881 * 180.02562 * 11 10 8 13 13 C 1.47203 * 109.46932 * 179.97438 * 12 11 10 14 14 N 9.78512 * 70.24631 * 143.80261 * 2 1 3 15 15 C 1.46925 * 118.71725 * 306.64299 * 7 6 5 16 16 H 1.08994 * 109.58524 * 293.49917 * 15 7 6 17 17 C 1.52999 * 109.58681 * 173.21521 * 15 7 6 18 18 C 1.53003 * 109.47405 * 180.50617 * 17 15 7 19 19 C 1.52994 * 109.47076 * 175.08256 * 18 17 15 20 20 N 1.46504 * 109.46650 * 180.02562 * 19 18 17 21 21 C 1.36938 * 119.99678 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00439 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99910 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99946 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00109 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46955 * 269.99817 * 25 23 21 27 27 H 1.48508 * 109.47087 * 29.99426 * 25 23 21 28 28 H 1.48491 * 109.47155 * 149.99327 * 25 23 21 29 29 H 1.09004 * 109.46950 * 299.93212 * 1 2 3 30 30 H 1.08996 * 109.47271 * 59.93601 * 1 2 3 31 31 H 1.09003 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46168 * 61.41465 * 4 2 1 33 33 H 1.09000 * 109.46024 * 181.39045 * 4 2 1 34 34 H 1.08997 * 109.50350 * 58.58696 * 5 4 2 35 35 H 1.09000 * 109.49529 * 178.68769 * 5 4 2 36 36 H 1.08994 * 109.59110 * 174.42495 * 6 5 4 37 37 H 1.09004 * 109.58812 * 294.71153 * 6 5 4 38 38 H 1.08997 * 109.47090 * 300.00287 * 10 8 7 39 39 H 1.09006 * 109.46979 * 59.99740 * 10 8 7 40 40 H 1.08992 * 109.46948 * 299.99985 * 12 11 10 41 41 H 1.09000 * 109.46890 * 60.00358 * 12 11 10 42 42 H 1.08998 * 109.47170 * 60.50540 * 17 15 7 43 43 H 1.09004 * 109.47355 * 300.50930 * 17 15 7 44 44 H 1.09002 * 109.46860 * 55.08285 * 18 17 15 45 45 H 1.08999 * 109.46868 * 295.08805 * 18 17 15 46 46 H 1.09002 * 109.47253 * 60.00269 * 19 18 17 47 47 H 1.08997 * 109.47212 * 299.99946 * 19 18 17 48 48 H 0.96992 * 120.00264 * 0.02562 * 20 19 18 49 49 H 0.96997 * 119.99543 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7230 -1.2482 5 6 1.5042 -2.1559 -1.2658 6 6 2.0153 -2.9038 -0.0304 7 7 1.6551 -2.1388 1.1716 8 6 0.9802 -2.7232 2.1814 9 8 0.6003 -2.0582 3.1218 10 6 0.6977 -4.2030 2.1419 11 16 -0.2187 -4.6835 3.6318 12 6 -0.4600 -6.4671 3.4049 13 6 -1.2017 -7.0119 4.5538 14 7 -1.7772 -7.4318 5.4387 15 6 2.0414 -0.7234 1.2498 16 1 3.1272 -0.6433 1.2998 17 6 1.4223 -0.0910 2.4978 18 6 1.8158 1.3858 2.5699 19 6 1.0989 2.0477 3.7483 20 7 1.4752 3.4619 3.8169 21 6 0.9535 4.2624 4.7978 22 1 0.2649 3.8512 5.5211 23 6 1.3105 5.6023 4.8631 24 7 0.8095 6.3716 5.8062 25 14 2.5021 6.3135 3.6125 26 1 3.8914 6.1751 4.1182 27 1 2.3675 5.5804 2.3280 28 1 2.1944 7.7501 3.3971 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6994 -0.1960 -2.1388 33 1 3.1312 -0.7440 -1.2347 34 1 0.4145 -2.1362 -1.2542 35 1 1.8498 -2.6629 -2.1667 36 1 1.5572 -3.8918 0.0142 37 1 3.0991 -3.0058 -0.0873 38 1 0.1034 -4.4360 1.2584 39 1 1.6387 -4.7516 2.1018 40 1 -1.0255 -6.6437 2.4901 41 1 0.5102 -6.9587 3.3331 42 1 1.7865 -0.6078 3.3857 43 1 0.3367 -0.1757 2.4478 44 1 1.5289 1.8839 1.6438 45 1 2.8939 1.4682 2.7078 46 1 1.3858 1.5496 4.6744 47 1 0.0208 1.9653 3.6103 48 1 2.0933 3.8313 3.1671 49 1 1.0587 7.3079 5.8516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689117666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:37 Heat of formation + Delta-G solvation = -7.416414 kcal Electronic energy + Delta-G solvation = -27453.911030 eV Core-core repulsion = 23735.265610 eV Total energy + Delta-G solvation = -3718.645420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.77395 -38.80744 -37.74904 -37.43991 -35.47179 -34.34349 -33.38639 -31.40764 -31.26259 -30.75408 -28.15817 -27.22913 -25.49635 -24.49205 -23.10927 -21.98761 -21.37163 -19.63976 -19.59746 -18.92060 -17.77829 -17.25231 -17.02592 -16.61183 -16.56032 -16.45976 -15.94649 -15.80156 -15.48461 -15.37138 -14.93597 -14.88052 -14.76212 -14.54243 -14.17058 -13.86080 -13.85350 -13.71410 -13.56822 -13.23391 -13.08886 -12.96640 -12.92790 -12.77450 -12.71662 -12.38498 -12.22256 -12.03974 -11.92377 -11.83916 -11.69608 -11.55477 -11.25343 -11.13193 -10.97283 -10.85435 -10.03340 -9.44420 -9.34556 -8.71198 -8.05837 -5.40819 0.07667 1.34879 1.37419 1.40981 1.48523 1.67118 1.69999 2.02109 2.16833 2.46671 2.85865 3.24323 3.40629 3.66022 3.83996 3.88453 3.95959 4.15907 4.20028 4.21473 4.25242 4.27012 4.31833 4.37735 4.44652 4.52451 4.60188 4.65931 4.71880 4.73160 4.85138 4.91564 4.95414 5.01780 5.06615 5.12506 5.19814 5.29233 5.31083 5.36694 5.48327 5.53524 5.60423 5.71025 5.81230 6.18180 6.44804 6.49774 7.03992 7.26329 7.78743 8.02287 9.16114 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.002649 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.257659 B =10569.074277 C =12749.206901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.100 3.900 7 N -0.599 5.599 8 C 0.514 3.486 9 O -0.556 6.556 10 C -0.107 4.107 11 S -0.233 6.233 12 C -0.001 4.001 13 C 0.244 3.756 14 N -0.478 5.478 15 C 0.160 3.840 16 H 0.081 0.919 17 C -0.089 4.089 18 C -0.122 4.122 19 C 0.159 3.841 20 N -0.757 5.757 21 C -0.244 4.244 22 H 0.047 0.953 23 C -0.068 4.068 24 N -0.985 5.985 25 Si 0.966 3.034 26 H -0.274 1.274 27 H -0.248 1.248 28 H -0.291 1.291 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.368 0.632 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -31.896 -25.435 41.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.021 4.021 7 N -0.332 5.332 8 C 0.302 3.698 9 O -0.434 6.434 10 C -0.257 4.257 11 S -0.009 6.009 12 C -0.151 4.151 13 C -0.074 4.074 14 N -0.158 5.158 15 C 0.056 3.944 16 H 0.099 0.901 17 C -0.127 4.127 18 C -0.161 4.161 19 C 0.033 3.967 20 N -0.403 5.403 21 C -0.375 4.375 22 H 0.065 0.935 23 C -0.259 4.259 24 N -0.635 5.635 25 Si 0.791 3.209 26 H -0.200 1.200 27 H -0.173 1.173 28 H -0.217 1.217 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.185 0.815 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.202 0.798 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.990 -31.543 -22.617 39.133 hybrid contribution 0.702 0.761 -0.887 1.363 sum 5.692 -30.782 -23.503 39.145 Atomic orbital electron populations 1.21827 0.95572 1.01691 1.00860 1.21562 0.96073 0.99775 0.95014 0.90678 1.21551 1.01018 0.96239 0.96245 1.21971 1.01442 0.95376 0.98482 1.22149 1.02025 0.95641 0.82283 1.48105 1.55854 1.10711 1.18576 1.20326 0.77754 0.89514 0.82211 1.90907 1.51744 1.64544 1.36230 1.23631 1.06414 0.95629 1.00070 1.88794 1.74998 1.05619 1.31498 1.21071 1.05039 0.94771 0.94169 1.28581 0.92521 0.92545 0.93725 1.81315 1.11534 1.10904 1.12034 1.21206 0.98606 0.79964 0.94609 0.90092 1.21850 1.01176 0.92167 0.97482 1.21856 1.00093 0.96794 0.97320 1.20667 0.96350 0.82823 0.96835 1.42706 1.55586 1.07230 1.34804 1.19052 1.20937 0.91772 1.05747 0.93530 1.25663 1.02732 0.96436 1.01105 1.69916 1.49883 1.06529 1.37219 0.85257 0.78682 0.77284 0.79648 1.19991 1.17274 1.21734 0.94854 0.92369 0.92124 0.91346 0.90851 0.91637 0.88183 0.86491 0.89435 0.83081 0.82994 0.81464 0.81463 0.92079 0.92022 0.91159 0.91577 0.97240 0.97232 0.79834 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.20 71.98 0.59 -2.12 16 2 C -0.11 -1.69 2.29 -10.72 -0.02 -1.71 16 3 H 0.07 1.39 6.65 -2.38 -0.02 1.38 16 4 C -0.11 -1.01 5.43 30.62 0.17 -0.84 16 5 C -0.13 -0.54 5.74 30.67 0.18 -0.37 16 6 C 0.10 0.28 6.32 86.36 0.55 0.83 16 7 N -0.60 -7.55 2.43 -794.94 -1.93 -9.48 16 8 C 0.51 8.58 7.63 87.66 0.67 9.24 16 9 O -0.56 -15.97 11.27 -3.05 -0.03 -16.01 16 10 C -0.11 -0.61 4.84 71.24 0.34 -0.26 16 11 S -0.23 -3.26 20.83 -56.49 -1.18 -4.44 16 12 C 0.00 0.00 6.42 70.18 0.45 0.45 16 13 C 0.24 3.47 15.44 89.44 1.38 4.85 16 14 N -0.48 -10.96 18.54 20.01 0.37 -10.59 16 15 C 0.16 2.91 2.72 44.97 0.12 3.04 16 16 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.09 -2.50 2.64 30.59 0.08 -2.42 16 18 C -0.12 -3.93 5.11 30.59 0.16 -3.78 16 19 C 0.16 7.07 6.26 86.38 0.54 7.61 16 20 N -0.76 -39.11 5.41 -343.45 -1.86 -40.96 16 21 C -0.24 -15.24 10.47 84.03 0.88 -14.36 16 22 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.99 -66.26 13.97 21.65 0.30 -65.96 16 25 Si 0.97 47.14 27.74 68.60 1.90 49.04 16 26 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H 0.03 0.85 6.35 -2.39 -0.02 0.83 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.04 5.98 -2.39 -0.01 1.02 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.40 6.34 -2.39 -0.02 0.38 16 35 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.12 -0.47 5.97 -2.39 -0.01 -0.48 16 37 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.15 -0.26 7.46 -2.39 -0.02 -0.28 16 39 H 0.15 -0.25 8.12 -2.39 -0.02 -0.27 16 40 H 0.17 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.17 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.06 2.01 6.49 -2.39 -0.02 2.00 16 43 H 0.06 2.01 5.21 -2.38 -0.01 2.00 16 44 H 0.07 2.12 6.32 -2.39 -0.02 2.11 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.37 17.53 5.53 -92.71 -0.51 17.01 16 49 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -93.07 392.27 4.51 -88.56 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.39 Total: 13.47 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 6.55 Total: -3.64 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -3.11 Total: -126.99 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.03 Total: -16.01 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.90 Total: 49.04 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.18 Total: -4.44 kcal Total: -93.07 4.51 -88.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689117666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.140 kcal (2) G-P(sol) polarization free energy of solvation -93.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds