Wall clock time and date at job start Sat Apr 11 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.52999 * 109.47492 * 294.29927 * 13 12 11 15 15 N 1.46496 * 109.47389 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00153 * 180.02562 * 15 14 13 17 17 O 1.21601 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.47422 * 120.00067 * 180.02562 * 16 15 14 19 19 C 1.41288 * 126.41728 * 359.68670 * 18 16 15 20 20 N 1.30444 * 108.02726 * 179.85424 * 19 18 16 21 21 N 1.39932 * 108.89453 * 0.41010 * 20 19 18 22 22 C 1.46500 * 125.75695 * 179.73548 * 21 20 19 23 23 C 1.53004 * 109.46902 * 304.99925 * 22 21 20 24 24 F 1.39911 * 109.46981 * 179.97438 * 23 22 21 25 25 C 1.34257 * 108.49540 * 359.73647 * 21 20 19 26 26 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 27 27 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 28 28 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 30 30 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 31 31 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 32 32 H 1.08999 * 109.42012 * 173.94831 * 11 10 9 33 33 H 1.09006 * 109.47464 * 54.30373 * 13 12 11 34 34 H 1.09008 * 109.46977 * 174.29829 * 13 12 11 35 35 H 1.08994 * 109.46894 * 300.00374 * 14 13 12 36 36 H 1.09005 * 109.46596 * 60.00053 * 14 13 12 37 37 H 0.97000 * 120.00135 * 0.02562 * 15 14 13 38 38 H 1.08001 * 125.98778 * 0.02562 * 19 18 16 39 39 H 1.09000 * 109.47037 * 64.99539 * 22 21 20 40 40 H 1.09000 * 109.47558 * 184.99709 * 22 21 20 41 41 H 1.08991 * 109.47501 * 299.99590 * 23 22 21 42 42 H 1.08995 * 109.47013 * 60.00278 * 23 22 21 43 43 H 1.08004 * 126.29825 * 180.02562 * 25 21 20 44 44 H 1.09002 * 109.49350 * 303.14487 * 26 12 11 45 45 H 1.08999 * 109.49121 * 183.06761 * 26 12 11 46 46 H 1.08998 * 109.62394 * 350.89040 * 27 9 7 47 47 H 1.09001 * 109.62891 * 111.47464 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.5519 -5.8904 -3.4578 15 7 -0.4827 -6.9230 -4.4946 16 6 -1.5899 -7.2596 -5.1855 17 8 -2.6462 -6.7058 -4.9484 18 6 -1.5203 -8.2991 -6.2285 19 6 -0.3700 -9.0213 -6.6176 20 7 -0.7143 -9.8490 -7.5651 21 7 -2.0792 -9.6918 -7.8303 22 6 -2.8479 -10.4349 -8.8319 23 6 -2.1817 -10.2840 -10.2010 24 9 -2.9154 -10.9941 -11.1575 25 6 -2.5658 -8.7451 -7.0121 26 6 2.0052 -4.6207 -1.0114 27 6 1.8271 -3.6605 0.1695 28 1 -0.4850 0.8400 0.0004 29 1 -0.6889 -2.6172 -0.6930 30 1 0.0879 -1.3427 -1.6691 31 1 1.2905 -3.0222 -2.9917 32 1 -0.4420 -3.4324 -2.9948 33 1 1.5400 -5.3964 -3.6034 34 1 1.1611 -6.6407 -2.3883 35 1 -1.2599 -6.1954 -2.6873 36 1 -0.8810 -4.9511 -3.9023 37 1 0.3600 -7.3645 -4.6839 38 1 0.6203 -8.9096 -6.2014 39 1 -2.8790 -11.4892 -8.5572 40 1 -3.8632 -10.0409 -8.8765 41 1 -2.1505 -9.2297 -10.4757 42 1 -1.1664 -10.6780 -10.1564 43 1 -3.5874 -8.3967 -6.9735 44 1 2.8210 -4.2714 -1.6443 45 1 2.2358 -5.6182 -0.6375 46 1 2.7786 -3.5350 0.6861 47 1 1.0833 -4.0612 0.8582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690074893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:51 Heat of formation + Delta-G solvation = 27.088854 kcal Electronic energy + Delta-G solvation = -28291.049823 eV Core-core repulsion = 24039.980239 eV Total energy + Delta-G solvation = -4251.069584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.37322 -41.85992 -39.37839 -38.12972 -35.38611 -34.83098 -33.90399 -31.50164 -30.95491 -29.99237 -29.90006 -28.52265 -25.95645 -24.46926 -23.56927 -22.90247 -22.45557 -21.46436 -21.10778 -20.29142 -19.10650 -18.45367 -17.12406 -16.85533 -16.78783 -16.18979 -16.07003 -15.65640 -15.57895 -15.11592 -14.90180 -14.60873 -14.41359 -14.30369 -14.00406 -13.63090 -13.48195 -13.41737 -13.36356 -13.21432 -12.90636 -12.50230 -12.22963 -11.76888 -11.61618 -11.43126 -11.37256 -11.27522 -11.04014 -10.74584 -10.43889 -10.30308 -10.14215 -10.04349 -10.03418 -9.73794 -9.60161 -9.27853 -8.95646 -8.49208 -7.87436 -6.65291 -5.76352 -3.17971 1.07674 1.65602 1.75108 3.06924 3.27793 3.38892 3.45678 3.47049 3.50850 3.85730 4.16634 4.23572 4.30226 4.42961 4.47612 4.52660 4.61776 4.74825 4.92536 4.99529 5.09301 5.17546 5.31137 5.41223 5.44509 5.53984 5.84150 5.88163 5.92339 5.99803 6.09895 6.12832 6.22243 6.22739 6.33573 6.39197 6.55502 6.69482 6.93779 6.98846 7.25495 7.41939 7.56613 7.65480 7.71011 7.82887 8.17578 8.45284 9.22832 9.86204 10.44870 11.32332 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.001617 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.114743 B =17314.916486 C =17668.551392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.178 3.822 11 C 0.030 3.970 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.123 3.877 15 N -0.724 5.724 16 C 0.593 3.407 17 O -0.546 6.546 18 C -0.287 4.287 19 C 0.087 3.913 20 N -0.297 5.297 21 N -0.366 5.366 22 C 0.102 3.898 23 C 0.053 3.947 24 F -0.206 7.206 25 C 0.133 3.867 26 C 0.047 3.953 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.192 0.808 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.191 0.809 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 -22.713 -18.211 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.098 4.098 12 N -0.255 5.255 13 C -0.084 4.084 14 C 0.000 4.000 15 N -0.375 5.375 16 C 0.380 3.620 17 O -0.424 6.424 18 C -0.302 4.302 19 C -0.101 4.101 20 N -0.117 5.117 21 N -0.145 5.145 22 C -0.020 4.020 23 C -0.003 4.003 24 F -0.187 7.187 25 C -0.018 4.018 26 C -0.083 4.083 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.209 0.791 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.208 0.792 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.766 -23.265 -18.607 30.028 hybrid contribution 1.185 1.419 -0.144 1.855 sum -2.580 -21.845 -18.752 28.905 Atomic orbital electron populations 1.70029 1.05187 1.25497 1.53975 1.25031 0.95307 0.98347 1.01022 0.86287 0.79080 0.83751 0.77629 1.21536 1.21742 1.20488 1.19198 0.92571 0.84824 1.41654 0.91647 1.44145 1.34414 1.01275 1.52048 1.20966 0.88997 0.96546 0.88314 1.23088 0.98833 0.89211 0.98716 1.61867 1.34990 1.05744 1.22852 1.22201 0.95079 0.96911 0.94244 1.21379 0.98094 0.90855 0.89711 1.45698 1.11440 1.41517 1.38871 1.17145 0.83638 0.81125 0.80115 1.90809 1.29207 1.54563 1.67795 1.20319 0.94120 1.08297 1.07463 1.24125 0.99339 0.92731 0.93935 1.77163 0.90679 1.23975 1.19857 1.48260 1.07511 1.29828 1.28935 1.22338 0.94836 0.98604 0.86233 1.22156 0.95798 0.97629 0.84707 1.92815 1.79775 1.80899 1.65250 1.23046 1.00164 0.88847 0.89714 1.22622 0.89355 0.99490 0.96820 1.20984 0.97851 0.86512 0.92539 0.93585 0.95375 0.89338 0.95583 0.91753 0.94987 0.90860 0.90344 0.90996 0.76983 0.79097 0.87979 0.86897 0.89874 0.88945 0.79185 0.95366 0.91979 0.92566 0.95584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.16 55.49 0.62 -25.74 16 2 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.97 9.63 -15.06 -0.15 -7.11 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 9 N -0.60 -15.07 3.03 -171.73 -0.52 -15.60 16 10 C 0.18 4.31 5.45 -3.36 -0.02 4.29 16 11 C 0.03 0.59 5.48 -3.46 -0.02 0.57 16 12 N -0.53 -9.07 4.63 -234.02 -1.08 -10.15 16 13 C 0.04 0.57 5.08 -3.83 -0.02 0.55 16 14 C 0.12 1.59 5.61 -4.04 -0.02 1.57 16 15 N -0.72 -7.47 5.55 -61.39 -0.34 -7.81 16 16 C 0.59 7.12 7.81 -12.52 -0.10 7.02 16 17 O -0.55 -8.76 16.90 5.28 0.09 -8.67 16 18 C -0.29 -2.64 6.13 -105.07 -0.64 -3.28 16 19 C 0.09 0.65 11.50 -16.98 -0.20 0.45 16 20 N -0.30 -2.44 12.33 30.86 0.38 -2.06 16 21 N -0.37 -2.44 3.65 -60.80 -0.22 -2.66 16 22 C 0.10 0.38 6.94 -4.04 -0.03 0.35 16 23 C 0.05 0.22 7.73 37.16 0.29 0.51 16 24 F -0.21 -1.27 17.36 2.25 0.04 -1.23 16 25 C 0.13 1.01 11.25 -16.56 -0.19 0.82 16 26 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 27 C 0.15 3.11 6.69 -3.60 -0.02 3.09 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16 33 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.81 7.97 -51.92 -0.41 0.40 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.06 6.40 -51.93 -0.33 0.73 16 37 H 0.40 2.81 7.43 -40.82 -0.30 2.51 16 38 H 0.19 0.81 7.50 -52.49 -0.39 0.42 16 39 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.17 8.06 -51.93 -0.42 -0.25 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.19 1.07 8.06 -52.48 -0.42 0.64 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 46 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -34.81 388.45 -8.54 -43.35 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.10 Total: -1.56 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.22 Total: 9.57 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -1.17 Total: -64.02 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.81 -8.54 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690074893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.439 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds