Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.52999 * 109.47492 * 294.29927 * 13 12 11 15 15 N 1.46496 * 109.47389 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00153 * 180.02562 * 15 14 13 17 17 O 1.21601 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.47422 * 120.00067 * 180.02562 * 16 15 14 19 19 C 1.41288 * 126.41728 * 359.68670 * 18 16 15 20 20 N 1.30444 * 108.02726 * 179.85424 * 19 18 16 21 21 N 1.39932 * 108.89453 * 0.41010 * 20 19 18 22 22 C 1.46500 * 125.75695 * 179.73548 * 21 20 19 23 23 C 1.53004 * 109.46902 * 304.99925 * 22 21 20 24 24 F 1.39911 * 109.46981 * 179.97438 * 23 22 21 25 25 C 1.34257 * 108.49540 * 359.73647 * 21 20 19 26 26 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 27 27 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 28 28 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 30 30 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 31 31 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 32 32 H 1.08999 * 109.42012 * 173.94831 * 11 10 9 33 33 H 1.09006 * 109.47464 * 54.30373 * 13 12 11 34 34 H 1.09008 * 109.46977 * 174.29829 * 13 12 11 35 35 H 1.08994 * 109.46894 * 300.00374 * 14 13 12 36 36 H 1.09005 * 109.46596 * 60.00053 * 14 13 12 37 37 H 0.97000 * 120.00135 * 0.02562 * 15 14 13 38 38 H 1.08001 * 125.98778 * 0.02562 * 19 18 16 39 39 H 1.09000 * 109.47037 * 64.99539 * 22 21 20 40 40 H 1.09000 * 109.47558 * 184.99709 * 22 21 20 41 41 H 1.08991 * 109.47501 * 299.99590 * 23 22 21 42 42 H 1.08995 * 109.47013 * 60.00278 * 23 22 21 43 43 H 1.08004 * 126.29825 * 180.02562 * 25 21 20 44 44 H 1.09002 * 109.49350 * 303.14487 * 26 12 11 45 45 H 1.08999 * 109.49121 * 183.06761 * 26 12 11 46 46 H 1.08998 * 109.62394 * 350.89040 * 27 9 7 47 47 H 1.09001 * 109.62891 * 111.47464 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.5519 -5.8904 -3.4578 15 7 -0.4827 -6.9230 -4.4946 16 6 -1.5899 -7.2596 -5.1855 17 8 -2.6462 -6.7058 -4.9484 18 6 -1.5203 -8.2991 -6.2285 19 6 -0.3700 -9.0213 -6.6176 20 7 -0.7143 -9.8490 -7.5651 21 7 -2.0792 -9.6918 -7.8303 22 6 -2.8479 -10.4349 -8.8319 23 6 -2.1817 -10.2840 -10.2010 24 9 -2.9154 -10.9941 -11.1575 25 6 -2.5658 -8.7451 -7.0121 26 6 2.0052 -4.6207 -1.0114 27 6 1.8271 -3.6605 0.1695 28 1 -0.4850 0.8400 0.0004 29 1 -0.6889 -2.6172 -0.6930 30 1 0.0879 -1.3427 -1.6691 31 1 1.2905 -3.0222 -2.9917 32 1 -0.4420 -3.4324 -2.9948 33 1 1.5400 -5.3964 -3.6034 34 1 1.1611 -6.6407 -2.3883 35 1 -1.2599 -6.1954 -2.6873 36 1 -0.8810 -4.9511 -3.9023 37 1 0.3600 -7.3645 -4.6839 38 1 0.6203 -8.9096 -6.2014 39 1 -2.8790 -11.4892 -8.5572 40 1 -3.8632 -10.0409 -8.8765 41 1 -2.1505 -9.2297 -10.4757 42 1 -1.1664 -10.6780 -10.1564 43 1 -3.5874 -8.3967 -6.9735 44 1 2.8210 -4.2714 -1.6443 45 1 2.2358 -5.6182 -0.6375 46 1 2.7786 -3.5350 0.6861 47 1 1.0833 -4.0612 0.8582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690074893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = 1.501688 kcal Electronic energy + Delta-G solvation = -28292.159366 eV Core-core repulsion = 24039.980239 eV Total energy + Delta-G solvation = -4252.179127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.78917 -42.43450 -40.36757 -39.57893 -36.79429 -35.48183 -35.13714 -33.27591 -31.61492 -31.58302 -30.81076 -29.60541 -27.55531 -25.24207 -24.72383 -24.29078 -23.72897 -22.54154 -21.73749 -21.12483 -20.77367 -19.11003 -18.68573 -17.50676 -17.38881 -17.29119 -16.78931 -16.70000 -16.46787 -16.17062 -15.98393 -15.82862 -15.46233 -15.33415 -15.20693 -15.07874 -14.85776 -14.78831 -14.35496 -14.08859 -13.91936 -13.70433 -13.19162 -12.98258 -12.78491 -12.65426 -12.61140 -12.53104 -12.25246 -12.20308 -12.01138 -11.83750 -11.82475 -11.53307 -11.38985 -10.96914 -10.66319 -10.57886 -10.16435 -9.69279 -9.26662 -8.66978 -7.86353 -5.31473 0.46363 1.12869 1.20007 1.47285 1.48423 1.57627 2.18023 2.46193 2.51768 3.09392 3.19744 3.29403 3.57097 3.70323 3.73090 3.76128 3.92043 3.97501 4.08388 4.14006 4.17238 4.23575 4.32829 4.38252 4.50616 4.51345 4.58214 4.66788 4.71029 4.74770 4.75722 4.88062 4.97895 5.05381 5.08531 5.23427 5.35478 5.39389 5.46140 5.62630 5.69783 5.73706 6.17271 6.27003 6.38676 6.42868 6.65268 7.14153 7.31944 7.85444 8.39713 9.20333 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.001617 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.114743 B =17314.916486 C =17668.551392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.184 3.816 11 C 0.050 3.950 12 N -0.543 5.543 13 C 0.054 3.946 14 C 0.132 3.868 15 N -0.709 5.709 16 C 0.592 3.408 17 O -0.595 6.595 18 C -0.311 4.311 19 C 0.095 3.905 20 N -0.318 5.318 21 N -0.361 5.361 22 C 0.098 3.902 23 C 0.056 3.944 24 F -0.217 7.217 25 C 0.138 3.862 26 C 0.058 3.942 27 C 0.140 3.860 28 H 0.250 0.750 29 H -0.004 1.004 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.415 0.585 38 H 0.220 0.780 39 H 0.111 0.889 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.206 0.794 44 H 0.029 0.971 45 H 0.101 0.899 46 H 0.063 0.937 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 -24.740 -19.427 31.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.058 3.942 11 C -0.079 4.079 12 N -0.269 5.269 13 C -0.074 4.074 14 C 0.008 3.992 15 N -0.361 5.361 16 C 0.381 3.619 17 O -0.477 6.477 18 C -0.326 4.326 19 C -0.093 4.093 20 N -0.137 5.137 21 N -0.139 5.139 22 C -0.023 4.023 23 C 0.001 3.999 24 F -0.198 7.198 25 C -0.014 4.014 26 C -0.070 4.070 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.252 0.748 38 H 0.237 0.763 39 H 0.129 0.871 40 H 0.155 0.845 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.223 0.777 44 H 0.047 0.953 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -2.067 -25.365 -19.849 32.275 hybrid contribution 0.642 1.946 0.234 2.063 sum -1.425 -23.419 -19.616 30.582 Atomic orbital electron populations 1.70199 1.06732 1.25833 1.55563 1.25819 0.96053 1.01580 1.01384 0.85240 0.78105 0.79443 0.77503 1.21275 1.22269 1.19140 1.19564 0.92947 0.85993 1.40818 0.91250 1.44431 1.34379 1.02322 1.52702 1.20705 0.87881 0.96323 0.89276 1.22688 0.99308 0.89457 0.96495 1.61746 1.35369 1.05216 1.24519 1.22198 0.95047 0.96534 0.93616 1.21096 0.97890 0.90565 0.89681 1.45474 1.12115 1.40723 1.37827 1.17538 0.83065 0.81047 0.80234 1.90783 1.31022 1.56485 1.69399 1.20170 0.95670 1.08819 1.07914 1.24549 1.00012 0.91570 0.93199 1.77148 0.91568 1.24590 1.20400 1.48446 1.07239 1.29374 1.28835 1.22578 0.95526 0.99028 0.85154 1.22141 0.95465 0.97644 0.84686 1.92794 1.80050 1.81213 1.65777 1.23345 1.00642 0.88320 0.89088 1.22465 0.89166 1.00242 0.95171 1.21182 0.97535 0.85518 0.94273 0.94128 0.98545 0.92703 0.95849 0.90636 0.93424 0.87833 0.92197 0.93188 0.74752 0.76317 0.87123 0.84486 0.89438 0.89338 0.77692 0.95302 0.88068 0.91891 0.96718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 11.16 21.65 0.24 -56.48 16 2 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 3 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.26 -14.65 9.63 84.03 0.81 -13.85 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 9 N -0.61 -31.54 3.03 -697.23 -2.11 -33.66 16 10 C 0.18 9.26 5.45 86.50 0.47 9.73 16 11 C 0.05 1.92 5.48 86.54 0.47 2.40 16 12 N -0.54 -17.61 4.63 -894.30 -4.14 -21.75 16 13 C 0.05 1.22 5.08 86.30 0.44 1.65 16 14 C 0.13 3.24 5.61 86.38 0.48 3.72 16 15 N -0.71 -13.26 5.55 -466.39 -2.59 -15.84 16 16 C 0.59 13.67 7.81 86.66 0.68 14.35 16 17 O -0.60 -19.27 16.90 -4.03 -0.07 -19.34 16 18 C -0.31 -5.21 6.13 -20.15 -0.12 -5.34 16 19 C 0.09 1.18 11.50 85.65 0.99 2.17 16 20 N -0.32 -4.53 12.33 -56.28 -0.69 -5.22 16 21 N -0.36 -4.08 3.65 -346.28 -1.26 -5.34 16 22 C 0.10 0.51 6.94 86.38 0.60 1.11 16 23 C 0.06 0.38 7.73 71.98 0.56 0.94 16 24 F -0.22 -2.40 17.36 44.97 0.78 -1.62 16 25 C 0.14 1.86 11.25 84.28 0.95 2.81 16 26 C 0.06 1.86 5.62 86.38 0.49 2.35 16 27 C 0.14 5.82 6.69 86.35 0.58 6.39 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.05 3.09 6.12 -2.39 -0.01 3.08 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 2.73 6.16 -2.39 -0.01 2.71 16 33 H 0.05 0.98 8.12 -2.38 -0.02 0.96 16 34 H 0.10 1.79 7.97 -2.38 -0.02 1.77 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.46 6.40 -2.38 -0.02 1.44 16 37 H 0.42 4.53 7.43 -92.71 -0.69 3.84 16 38 H 0.22 1.11 7.50 -2.91 -0.02 1.09 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.14 0.06 8.06 -2.39 -0.02 0.04 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.10 2.48 7.99 -2.39 -0.02 2.46 16 46 H 0.06 2.47 7.95 -2.39 -0.02 2.45 16 47 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -78.28 388.45 0.28 -77.99 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.30 Total: 8.06 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 7.80 Total: 25.85 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -10.56 Total: -138.30 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.07 Total: -19.34 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -78.28 0.28 -77.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690074893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.494 kcal (2) G-P(sol) polarization free energy of solvation -78.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds