Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99838 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47324 * 59.99585 * 9 7 6 11 11 C 1.53008 * 109.47154 * 300.00044 * 9 7 6 12 12 N 1.46499 * 109.47293 * 179.97438 * 9 7 6 13 13 C 1.34778 * 120.00288 * 204.99917 * 12 9 7 14 14 O 1.21279 * 119.99876 * 359.97438 * 13 12 9 15 15 C 1.50695 * 120.00068 * 180.02562 * 13 12 9 16 16 N 1.46502 * 109.47123 * 179.97438 * 15 13 12 17 17 C 1.34596 * 126.43471 * 124.99719 * 16 15 13 18 18 N 1.31075 * 106.68043 * 180.02562 * 17 16 15 19 19 N 1.28846 * 107.98715 * 359.97438 * 18 17 16 20 20 N 1.28745 * 109.39650 * 359.73539 * 19 18 17 21 21 N 1.46501 * 109.47013 * 119.99406 * 2 1 3 22 22 C 1.36941 * 120.00390 * 275.00328 * 21 2 1 23 23 H 1.08003 * 119.99309 * 359.97438 * 22 21 2 24 24 C 1.38801 * 119.99921 * 179.97438 * 22 21 2 25 25 N 1.31617 * 120.00682 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99761 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47098 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47246 * 120.00144 * 26 24 22 29 29 H 1.48498 * 109.47429 * 240.00013 * 26 24 22 30 30 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47423 * 300.00436 * 1 2 3 32 32 H 1.08998 * 109.46646 * 60.00601 * 1 2 3 33 33 H 1.09001 * 109.46997 * 55.00316 * 4 2 1 34 34 H 1.08996 * 109.47452 * 294.99889 * 4 2 1 35 35 H 1.09001 * 109.47289 * 60.00050 * 5 4 2 36 36 H 1.09004 * 109.47261 * 300.00306 * 5 4 2 37 37 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.46630 * 299.99966 * 11 9 7 39 39 H 1.09000 * 109.47188 * 60.00116 * 11 9 7 40 40 H 1.09002 * 109.47288 * 180.02562 * 11 9 7 41 41 H 0.97001 * 120.00197 * 25.00017 * 12 9 7 42 42 H 1.09007 * 109.46798 * 299.99649 * 15 13 12 43 43 H 1.09003 * 109.47835 * 59.99764 * 15 13 12 44 44 H 1.08004 * 126.66532 * 359.96696 * 17 16 15 45 45 H 0.97003 * 119.99667 * 94.99884 * 21 2 1 46 46 H 0.97002 * 120.00369 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 7 4.0533 -1.3035 -2.5100 7 6 5.3742 -1.3396 -2.7751 8 8 6.1586 -0.8011 -2.0230 9 6 5.8765 -2.0491 -4.0061 10 1 5.4422 -1.5886 -4.8935 11 6 5.4710 -3.5233 -3.9463 12 7 7.3365 -1.9458 -4.0677 13 6 7.9689 -2.0343 -5.2547 14 8 7.3292 -2.1999 -6.2717 15 6 9.4708 -1.9286 -5.3180 16 7 9.9111 -2.0556 -6.7095 17 6 10.6757 -1.1809 -7.3890 18 7 10.8314 -1.6738 -8.5935 19 7 10.1960 -2.7932 -8.6505 20 7 9.6436 -3.0298 -7.5119 21 7 2.0183 -0.6905 1.1963 22 6 2.1491 -0.0073 2.3759 23 1 1.8925 1.0407 2.4241 24 6 2.6112 -0.6617 3.5093 25 7 2.9243 -1.9388 3.4504 26 14 2.7902 0.2704 5.1183 27 1 2.3763 1.6828 4.9207 28 1 1.9291 -0.3573 6.1525 29 1 4.2071 0.2266 5.5608 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.6055 -0.2619 -2.1369 34 1 1.7518 -1.7716 -1.2054 35 1 3.9995 -1.0727 -0.4257 36 1 3.8532 0.4370 -1.3572 37 1 3.4259 -1.7345 -3.1112 38 1 5.9053 -3.9837 -3.0588 39 1 4.3847 -3.5998 -3.9007 40 1 5.8347 -4.0366 -4.8364 41 1 7.8482 -1.8137 -3.2543 42 1 9.7839 -0.9615 -4.9243 43 1 9.9166 -2.7251 -4.7221 44 1 11.0815 -0.2526 -7.0148 45 1 2.2490 -1.6317 1.1527 46 1 3.2469 -2.3962 4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690874112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = 60.626569 kcal Electronic energy + Delta-G solvation = -28510.612307 eV Core-core repulsion = 24280.916989 eV Total energy + Delta-G solvation = -4229.695318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.53585 -40.82316 -39.54906 -36.80538 -36.01817 -35.35375 -34.63112 -32.84359 -32.46547 -31.69309 -29.55717 -29.02087 -28.09745 -25.20426 -24.22211 -24.05478 -23.61292 -22.53053 -21.22154 -20.69301 -19.85110 -18.80738 -18.30272 -17.37061 -17.18842 -16.93337 -16.43475 -16.23875 -15.98898 -15.61805 -15.32800 -14.86785 -14.38035 -14.26699 -13.95500 -13.86290 -13.57050 -13.30329 -13.06633 -12.84097 -12.69477 -12.57612 -12.48601 -12.12423 -12.02257 -11.63069 -11.60117 -11.50215 -11.19841 -11.01183 -10.84479 -10.81925 -10.71207 -10.47649 -10.37337 -10.13107 -9.95852 -9.71384 -9.66181 -9.08112 -8.95538 -7.01806 -5.81571 -3.10403 0.82672 1.33789 1.82652 1.92957 2.31496 2.41746 3.10737 3.39785 3.45796 3.47675 3.61002 3.79702 3.89611 4.13847 4.34932 4.39163 4.55058 4.62873 4.71957 5.00822 5.11765 5.19640 5.27453 5.29197 5.36985 5.48281 5.57936 5.60578 5.73644 5.76601 5.78274 5.97160 6.08077 6.22419 6.28685 6.33797 6.50392 6.60103 6.78800 6.79335 6.99110 7.32210 7.49011 7.66645 8.01591 8.25117 8.36737 9.48407 10.04387 10.38930 11.41003 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.001786 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.729021 B =15677.991269 C =16414.446485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.719 5.719 7 C 0.507 3.493 8 O -0.534 6.534 9 C 0.127 3.873 10 H 0.115 0.885 11 C -0.161 4.161 12 N -0.703 5.703 13 C 0.506 3.494 14 O -0.511 6.511 15 C 0.097 3.903 16 N -0.301 5.301 17 C 0.162 3.838 18 N -0.307 5.307 19 N -0.078 5.078 20 N -0.063 5.063 21 N -0.724 5.724 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.399 0.601 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.415 0.585 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.236 0.764 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 0.385 -18.013 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C -0.001 4.001 6 N -0.370 5.370 7 C 0.291 3.709 8 O -0.411 6.411 9 C 0.019 3.981 10 H 0.133 0.867 11 C -0.220 4.220 12 N -0.358 5.358 13 C 0.289 3.711 14 O -0.385 6.385 15 C -0.029 4.029 16 N -0.104 5.104 17 C -0.137 4.137 18 N -0.154 5.154 19 N -0.072 5.072 20 N -0.050 5.050 21 N -0.366 5.366 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.253 0.747 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.252 0.748 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.745 -0.159 -19.077 21.896 hybrid contribution 0.056 0.738 2.077 2.205 sum 10.801 0.579 -17.001 20.150 Atomic orbital electron populations 1.22426 0.99057 1.00883 1.00024 1.20152 0.91948 0.95563 0.85966 0.93271 1.22071 0.93660 1.01961 0.99499 1.21534 0.94665 0.97179 0.86716 1.46054 1.06746 1.56515 1.27649 1.20380 0.83227 0.80613 0.86688 1.90739 1.55180 1.45881 1.49315 1.20832 0.81124 0.97851 0.98306 0.86711 1.22153 1.02642 0.93386 1.03815 1.45558 1.07143 1.73544 1.09520 1.20094 0.89050 0.77856 0.84133 1.90863 1.66779 1.47053 1.33800 1.21973 0.94758 1.08579 0.77586 1.48148 1.34317 1.14977 1.12914 1.27782 0.96834 0.99720 0.89379 1.75013 1.19071 1.05235 1.16054 1.78696 1.07369 1.08878 1.12272 1.79023 1.17540 1.11253 0.97153 1.42459 1.78102 1.10635 1.05361 1.19266 1.36437 0.93873 0.87323 0.91140 1.24724 1.02157 0.95964 0.98060 1.69658 1.50994 1.08658 1.28762 0.86150 0.77310 0.78821 0.84099 1.20579 1.21941 1.21888 0.93490 0.92686 0.94546 0.91826 0.91471 0.89420 0.91618 0.76674 0.91261 0.90514 0.90665 0.74746 0.83466 0.84284 0.74760 0.78314 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.17 3.10 2.89 -67.93 -0.20 2.90 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.81 4.87 -26.73 -0.13 -1.94 16 5 C 0.12 1.75 5.56 -4.04 -0.02 1.73 16 6 N -0.72 -7.79 5.45 -60.29 -0.33 -8.12 16 7 C 0.51 5.81 7.22 -10.99 -0.08 5.73 16 8 O -0.53 -8.09 15.84 5.55 0.09 -8.01 16 9 C 0.13 1.07 2.98 -69.08 -0.21 0.87 16 10 H 0.12 0.97 7.58 -51.93 -0.39 0.58 16 11 C -0.16 -1.21 9.38 37.16 0.35 -0.86 16 12 N -0.70 -4.97 4.95 -54.93 -0.27 -5.25 16 13 C 0.51 3.76 7.81 -10.99 -0.09 3.67 16 14 O -0.51 -6.10 15.37 5.56 0.09 -6.02 16 15 C 0.10 0.32 6.96 -5.19 -0.04 0.29 16 16 N -0.30 -2.22 3.19 -63.73 -0.20 -2.43 16 17 C 0.16 1.02 12.79 -90.39 -1.16 -0.14 16 18 N -0.31 -3.33 12.36 29.59 0.37 -2.97 16 19 N -0.08 -1.02 13.43 60.35 0.81 -0.21 16 20 N -0.06 -0.74 12.30 60.35 0.74 0.00 16 21 N -0.72 -16.76 4.57 -53.43 -0.24 -17.00 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.01 -0.36 5.50 -17.44 -0.10 -0.46 16 25 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 26 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.62 7.75 -51.93 -0.40 1.21 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.11 7.89 -40.82 -0.32 2.79 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.41 2.47 7.79 -40.82 -0.32 2.15 16 42 H 0.15 -0.15 8.08 -51.93 -0.42 -0.57 16 43 H 0.14 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.24 0.10 8.06 -52.48 -0.42 -0.33 16 45 H 0.38 9.48 7.80 -40.82 -0.32 9.16 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -38.65 396.80 -5.49 -44.14 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.76 Total: 6.55 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.46 Total: 3.00 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 1.60 Total: -62.53 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.17 Total: -14.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.65 -5.49 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690874112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.770 kcal (2) G-P(sol) polarization free energy of solvation -38.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds