Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99838 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47324 * 59.99585 * 9 7 6 11 11 C 1.53008 * 109.47154 * 300.00044 * 9 7 6 12 12 N 1.46499 * 109.47293 * 179.97438 * 9 7 6 13 13 C 1.34778 * 120.00288 * 204.99917 * 12 9 7 14 14 O 1.21279 * 119.99876 * 359.97438 * 13 12 9 15 15 C 1.50695 * 120.00068 * 180.02562 * 13 12 9 16 16 N 1.46502 * 109.47123 * 179.97438 * 15 13 12 17 17 C 1.34596 * 126.43471 * 124.99719 * 16 15 13 18 18 N 1.31075 * 106.68043 * 180.02562 * 17 16 15 19 19 N 1.28846 * 107.98715 * 359.97438 * 18 17 16 20 20 N 1.28745 * 109.39650 * 359.73539 * 19 18 17 21 21 N 1.46501 * 109.47013 * 119.99406 * 2 1 3 22 22 C 1.36941 * 120.00390 * 275.00328 * 21 2 1 23 23 H 1.08003 * 119.99309 * 359.97438 * 22 21 2 24 24 C 1.38801 * 119.99921 * 179.97438 * 22 21 2 25 25 N 1.31617 * 120.00682 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99761 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47098 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47246 * 120.00144 * 26 24 22 29 29 H 1.48498 * 109.47429 * 240.00013 * 26 24 22 30 30 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47423 * 300.00436 * 1 2 3 32 32 H 1.08998 * 109.46646 * 60.00601 * 1 2 3 33 33 H 1.09001 * 109.46997 * 55.00316 * 4 2 1 34 34 H 1.08996 * 109.47452 * 294.99889 * 4 2 1 35 35 H 1.09001 * 109.47289 * 60.00050 * 5 4 2 36 36 H 1.09004 * 109.47261 * 300.00306 * 5 4 2 37 37 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.46630 * 299.99966 * 11 9 7 39 39 H 1.09000 * 109.47188 * 60.00116 * 11 9 7 40 40 H 1.09002 * 109.47288 * 180.02562 * 11 9 7 41 41 H 0.97001 * 120.00197 * 25.00017 * 12 9 7 42 42 H 1.09007 * 109.46798 * 299.99649 * 15 13 12 43 43 H 1.09003 * 109.47835 * 59.99764 * 15 13 12 44 44 H 1.08004 * 126.66532 * 359.96696 * 17 16 15 45 45 H 0.97003 * 119.99667 * 94.99884 * 21 2 1 46 46 H 0.97002 * 120.00369 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 7 4.0533 -1.3035 -2.5100 7 6 5.3742 -1.3396 -2.7751 8 8 6.1586 -0.8011 -2.0230 9 6 5.8765 -2.0491 -4.0061 10 1 5.4422 -1.5886 -4.8935 11 6 5.4710 -3.5233 -3.9463 12 7 7.3365 -1.9458 -4.0677 13 6 7.9689 -2.0343 -5.2547 14 8 7.3292 -2.1999 -6.2717 15 6 9.4708 -1.9286 -5.3180 16 7 9.9111 -2.0556 -6.7095 17 6 10.6757 -1.1809 -7.3890 18 7 10.8314 -1.6738 -8.5935 19 7 10.1960 -2.7932 -8.6505 20 7 9.6436 -3.0298 -7.5119 21 7 2.0183 -0.6905 1.1963 22 6 2.1491 -0.0073 2.3759 23 1 1.8925 1.0407 2.4241 24 6 2.6112 -0.6617 3.5093 25 7 2.9243 -1.9388 3.4504 26 14 2.7902 0.2704 5.1183 27 1 2.3763 1.6828 4.9207 28 1 1.9291 -0.3573 6.1525 29 1 4.2071 0.2266 5.5608 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.6055 -0.2619 -2.1369 34 1 1.7518 -1.7716 -1.2054 35 1 3.9995 -1.0727 -0.4257 36 1 3.8532 0.4370 -1.3572 37 1 3.4259 -1.7345 -3.1112 38 1 5.9053 -3.9837 -3.0588 39 1 4.3847 -3.5998 -3.9007 40 1 5.8347 -4.0366 -4.8364 41 1 7.8482 -1.8137 -3.2543 42 1 9.7839 -0.9615 -4.9243 43 1 9.9166 -2.7251 -4.7221 44 1 11.0815 -0.2526 -7.0148 45 1 2.2490 -1.6317 1.1527 46 1 3.2469 -2.3962 4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690874112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = 28.855402 kcal Electronic energy + Delta-G solvation = -28511.990008 eV Core-core repulsion = 24280.916989 eV Total energy + Delta-G solvation = -4231.073019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.16602 -41.57448 -40.39427 -38.17879 -36.65783 -36.09257 -35.88518 -34.18278 -33.48264 -32.51231 -30.93364 -29.86529 -29.29449 -26.11597 -25.65570 -24.85937 -24.52860 -23.59924 -21.98246 -21.62471 -21.09007 -19.57644 -19.18920 -18.78795 -17.93907 -17.65138 -17.19131 -16.94930 -16.87092 -16.64235 -16.35667 -16.02526 -15.66767 -15.32081 -15.10975 -14.89031 -14.59415 -14.40428 -14.11102 -13.73846 -13.57885 -13.54947 -13.38986 -13.21896 -13.13066 -12.85196 -12.73089 -12.62011 -12.26016 -12.22561 -12.20731 -12.13962 -12.08360 -11.62684 -11.58785 -11.50446 -11.12463 -11.00245 -10.91422 -10.39355 -10.12785 -8.96071 -7.91747 -5.17986 0.26109 0.92290 1.25703 1.28997 1.47149 1.47491 1.47958 1.56982 1.71960 2.28688 2.57864 3.20127 3.42771 3.47015 3.49841 3.59212 3.93101 3.93327 4.00581 4.01979 4.02438 4.05164 4.24134 4.39182 4.39503 4.57429 4.68572 4.70974 4.73087 4.79196 4.89602 5.03827 5.10097 5.13384 5.14913 5.19614 5.23833 5.40460 5.41955 5.56225 5.62782 6.25000 6.31675 6.44500 6.93413 7.12302 7.38003 7.58032 8.15877 8.37145 9.31725 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.001786 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.729021 B =15677.991269 C =16414.446485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.707 5.707 7 C 0.507 3.493 8 O -0.573 6.573 9 C 0.136 3.864 10 H 0.119 0.881 11 C -0.156 4.156 12 N -0.698 5.698 13 C 0.506 3.494 14 O -0.561 6.561 15 C 0.095 3.905 16 N -0.299 5.299 17 C 0.185 3.815 18 N -0.347 5.347 19 N -0.119 5.119 20 N -0.095 5.095 21 N -0.734 5.734 22 C -0.230 4.230 23 H 0.073 0.927 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.964 3.036 27 H -0.267 1.267 28 H -0.296 1.296 29 H -0.297 1.297 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.417 0.583 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.422 0.578 42 H 0.202 0.798 43 H 0.170 0.830 44 H 0.294 0.706 45 H 0.372 0.628 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.922 1.879 -18.507 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.359 5.359 7 C 0.293 3.707 8 O -0.453 6.453 9 C 0.028 3.972 10 H 0.137 0.863 11 C -0.215 4.215 12 N -0.353 5.353 13 C 0.291 3.709 14 O -0.438 6.438 15 C -0.028 4.028 16 N -0.101 5.101 17 C -0.113 4.113 18 N -0.195 5.195 19 N -0.113 5.113 20 N -0.082 5.082 21 N -0.374 5.374 22 C -0.363 4.363 23 H 0.091 0.909 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.794 3.206 27 H -0.192 1.192 28 H -0.224 1.224 29 H -0.225 1.225 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.261 0.739 42 H 0.218 0.782 43 H 0.187 0.813 44 H 0.309 0.691 45 H 0.204 0.796 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.804 1.358 -19.600 22.421 hybrid contribution -0.007 0.375 2.226 2.257 sum 10.796 1.732 -17.374 20.528 Atomic orbital electron populations 1.22278 0.97389 1.00999 1.00780 1.20455 0.92988 0.95286 0.85758 0.93856 1.21921 0.92762 1.02149 0.98794 1.21136 0.95178 0.96287 0.86393 1.45843 1.07183 1.56091 1.26768 1.20891 0.82901 0.79885 0.87005 1.90721 1.56138 1.47561 1.50841 1.20718 0.82174 0.97913 0.96433 0.86332 1.22124 1.03647 0.92420 1.03281 1.45560 1.06616 1.73139 1.09982 1.20741 0.90701 0.76346 0.83107 1.90855 1.68259 1.49363 1.35318 1.22487 0.91553 1.12747 0.76022 1.48396 1.33851 1.14121 1.13759 1.28790 0.94640 1.00127 0.87760 1.74901 1.20324 1.05393 1.18836 1.78655 1.08805 1.10401 1.13442 1.78925 1.18395 1.13229 0.97627 1.42644 1.78314 1.10249 1.06233 1.19622 1.34114 0.94054 0.88466 0.90863 1.25445 1.03468 0.96856 1.01174 1.69799 1.53044 1.10055 1.29063 0.85203 0.76603 0.78304 0.80482 1.19161 1.22371 1.22456 0.93672 0.94986 0.90713 0.87814 0.90882 0.93973 0.92723 0.74537 0.91722 0.89031 0.91116 0.73915 0.78151 0.81297 0.69098 0.79564 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.49 71.98 0.68 -4.06 16 2 C 0.16 5.61 2.89 44.99 0.13 5.74 16 3 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 4 C -0.12 -2.93 4.87 30.59 0.15 -2.78 16 5 C 0.13 3.77 5.56 86.38 0.48 4.25 16 6 N -0.71 -14.27 5.45 -463.05 -2.52 -16.80 16 7 C 0.51 11.10 7.22 87.66 0.63 11.74 16 8 O -0.57 -17.15 15.84 -3.04 -0.05 -17.19 16 9 C 0.14 2.11 2.98 44.25 0.13 2.24 16 10 H 0.12 1.82 7.58 -2.39 -0.02 1.81 16 11 C -0.16 -2.14 9.38 71.98 0.68 -1.46 16 12 N -0.70 -8.68 4.95 -446.10 -2.21 -10.89 16 13 C 0.51 6.56 7.81 87.66 0.68 7.25 16 14 O -0.56 -12.99 15.37 -3.03 -0.05 -13.04 16 15 C 0.10 0.31 6.96 85.63 0.60 0.91 16 16 N -0.30 -3.76 3.19 -355.55 -1.13 -4.89 16 17 C 0.18 1.82 12.79 180.27 2.31 4.13 16 18 N -0.35 -7.34 12.36 -60.29 -0.74 -8.08 16 19 N -0.12 -3.18 13.43 37.01 0.50 -2.68 16 20 N -0.09 -2.20 12.30 37.02 0.46 -1.74 16 21 N -0.73 -34.14 4.57 -322.95 -1.48 -35.62 16 22 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 23 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 24 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 25 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 26 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.59 7.75 -2.39 -0.02 1.57 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.42 5.42 7.89 -92.71 -0.73 4.69 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.95 7.56 -2.39 -0.02 0.93 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.42 4.22 7.79 -92.71 -0.72 3.49 16 42 H 0.20 -1.51 8.08 -2.38 -0.02 -1.53 16 43 H 0.17 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.29 -1.25 8.06 -2.91 -0.02 -1.28 16 45 H 0.37 18.76 7.80 -92.71 -0.72 18.04 16 46 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -90.35 396.80 1.71 -88.64 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -1.14 Total: 19.76 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 7.77 Total: 12.64 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -6.85 Total: -138.37 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.09 Total: -30.23 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -90.35 1.71 -88.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690874112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.492 kcal (2) G-P(sol) polarization free energy of solvation -90.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds