Wall clock time and date at job start Sat Apr 11 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47639 * 2 1 4 4 C 1.52994 * 109.47273 * 239.99673 * 2 1 3 5 5 N 1.46500 * 109.47152 * 65.00592 * 4 2 1 6 6 C 1.36936 * 120.00575 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99462 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00624 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99384 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00264 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47053 * 90.00360 * 10 8 6 12 12 H 1.48495 * 109.47372 * 210.00256 * 10 8 6 13 13 H 1.48500 * 109.47256 * 330.00604 * 10 8 6 14 14 C 1.52997 * 109.46822 * 120.00098 * 2 1 3 15 15 N 1.46497 * 109.47188 * 294.99696 * 14 2 1 16 16 C 1.34779 * 120.00488 * 180.02562 * 15 14 2 17 17 O 1.21288 * 119.99575 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00378 * 180.02562 * 16 15 14 19 19 H 1.08993 * 109.47512 * 300.00202 * 18 16 15 20 20 C 1.53006 * 109.46866 * 60.00080 * 18 16 15 21 21 N 1.46504 * 109.47137 * 179.97438 * 18 16 15 22 22 C 1.34779 * 119.99783 * 154.99736 * 21 18 16 23 23 O 1.21284 * 119.99864 * 0.02562 * 22 21 18 24 24 C 1.50698 * 119.99670 * 180.02562 * 22 21 18 25 25 N 1.46502 * 109.46686 * 180.02562 * 24 22 21 26 26 C 1.34600 * 126.43574 * 124.99962 * 25 24 22 27 27 N 1.31079 * 106.67480 * 179.97438 * 26 25 24 28 28 N 1.28841 * 107.99379 * 0.02562 * 27 26 25 29 29 N 1.28734 * 109.39451 * 359.73766 * 28 27 26 30 30 H 1.08992 * 109.47381 * 300.00501 * 1 2 3 31 31 H 1.09000 * 109.46758 * 60.00068 * 1 2 3 32 32 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47552 * 184.99762 * 4 2 1 34 34 H 1.08993 * 109.47733 * 305.00217 * 4 2 1 35 35 H 0.97004 * 120.00352 * 359.97438 * 5 4 2 36 36 H 0.97002 * 119.99453 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47153 * 175.00123 * 14 2 1 38 38 H 1.08996 * 109.47853 * 55.00095 * 14 2 1 39 39 H 0.97003 * 119.99956 * 0.02562 * 15 14 2 40 40 H 1.09001 * 109.46801 * 60.00064 * 20 18 16 41 41 H 1.09001 * 109.46998 * 179.97438 * 20 18 16 42 42 H 1.09000 * 109.47050 * 299.99952 * 20 18 16 43 43 H 0.97003 * 120.00173 * 335.00810 * 21 18 16 44 44 H 1.08997 * 109.47117 * 299.99744 * 24 22 21 45 45 H 1.08999 * 109.47222 * 60.00471 * 24 22 21 46 46 H 1.07990 * 126.66285 * 0.03878 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6526 0.0353 -2.4423 6 6 2.0021 -0.4202 -3.6855 7 1 2.5638 -1.3372 -3.7863 8 6 1.6346 0.2964 -4.8161 9 7 0.9505 1.4141 -4.6931 10 14 2.1120 -0.3248 -6.5118 11 1 1.0429 -1.2145 -7.0322 12 1 2.2867 0.8287 -7.4305 13 1 3.3859 -1.0825 -6.4209 14 6 2.0399 -0.7213 1.2492 15 7 1.6524 0.0353 2.4423 16 6 1.9963 -0.4130 3.6659 17 8 2.6263 -1.4433 3.7793 18 6 1.5972 0.3650 4.8933 19 1 2.0310 1.3638 4.8474 20 6 0.0722 0.4737 4.9546 21 7 2.0855 -0.3256 6.0895 22 6 2.3098 0.3676 7.2234 23 8 2.1068 1.5629 7.2536 24 6 2.8127 -0.3427 8.4537 25 7 2.9743 0.6232 9.5433 26 6 2.4219 0.5462 10.7683 27 7 2.8206 1.6064 11.4280 28 7 3.5778 2.2986 10.6486 29 7 3.6770 1.7047 9.5108 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 1.1484 0.8591 -2.3518 36 1 0.6940 1.9151 -5.4832 37 1 3.1262 -0.7995 1.2056 38 1 1.6054 -1.7198 1.2952 39 1 1.1482 0.8591 2.3517 40 1 -0.3616 -0.5252 5.0006 41 1 -0.2166 1.0360 5.8426 42 1 -0.2915 0.9872 4.0646 43 1 2.2477 -1.2817 6.0654 44 1 2.0952 -1.1078 8.7503 45 1 3.7732 -0.8099 8.2364 46 1 1.7765 -0.2375 11.1366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698769998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:05 Heat of formation + Delta-G solvation = 60.956559 kcal Electronic energy + Delta-G solvation = -28250.715780 eV Core-core repulsion = 24021.034772 eV Total energy + Delta-G solvation = -4229.681009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.59655 -40.96843 -39.74617 -37.10811 -36.10082 -35.46069 -34.60234 -32.94521 -32.77235 -31.67211 -30.09128 -29.29172 -26.78132 -25.72536 -24.79609 -24.27492 -23.67434 -22.47357 -21.30797 -20.78920 -20.06578 -18.89400 -18.39422 -17.53645 -17.07579 -16.99400 -16.41436 -16.39655 -16.25069 -15.79956 -15.36065 -14.89391 -14.60782 -14.38028 -14.05169 -13.98706 -13.68223 -13.45222 -13.15280 -12.98730 -12.87094 -12.71730 -12.55195 -12.41717 -12.14768 -12.13761 -11.67428 -11.55640 -11.14718 -10.99065 -10.90092 -10.78947 -10.67970 -10.56085 -10.54073 -10.28403 -10.07142 -9.83805 -9.71837 -9.29657 -8.93086 -6.98230 -5.82207 -3.10959 0.76357 1.26343 1.72390 1.87541 2.18813 2.23986 2.92635 3.40243 3.45764 3.47276 3.51915 3.71318 3.78121 4.06250 4.20453 4.30057 4.47634 4.54018 4.60587 4.89644 4.94591 5.02133 5.08910 5.20115 5.22195 5.26146 5.52206 5.53531 5.58018 5.61577 5.67573 5.82692 5.83962 5.98587 6.11128 6.23666 6.31004 6.56064 6.67511 6.67814 6.76722 7.13752 7.37993 7.65411 7.80469 8.19623 8.36759 9.48213 10.04726 10.39255 11.40656 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.001484 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.428621 B =18868.076156 C =18911.515205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.071 0.929 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.715 5.715 16 C 0.510 3.490 17 O -0.540 6.540 18 C 0.126 3.874 19 H 0.119 0.881 20 C -0.160 4.160 21 N -0.704 5.704 22 C 0.505 3.495 23 O -0.508 6.508 24 C 0.098 3.902 25 N -0.302 5.302 26 C 0.161 3.839 27 N -0.306 5.306 28 N -0.076 5.076 29 N -0.062 5.062 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.404 0.596 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.414 0.586 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -7.289 29.527 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.089 0.911 8 C -0.209 4.209 9 N -0.582 5.582 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.003 3.997 15 N -0.366 5.366 16 C 0.294 3.706 17 O -0.418 6.418 18 C 0.018 3.982 19 H 0.136 0.864 20 C -0.219 4.219 21 N -0.359 5.359 22 C 0.288 3.712 23 O -0.381 6.381 24 C -0.028 4.028 25 N -0.105 5.105 26 C -0.138 4.138 27 N -0.153 5.153 28 N -0.071 5.071 29 N -0.049 5.049 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.251 0.749 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.738 -6.031 29.631 30.247 hybrid contribution -0.643 -1.105 -1.388 1.888 sum -1.382 -7.136 28.242 29.163 Atomic orbital electron populations 1.21797 0.94568 1.01969 1.01591 1.21568 0.96785 1.00607 0.94109 0.90397 1.20565 0.96626 0.94190 0.85356 1.42326 1.66943 1.27689 1.00558 1.19232 1.28836 1.05533 0.83640 0.91148 1.24736 1.00931 0.97353 0.97885 1.69655 1.43467 1.16543 1.28547 0.86179 0.78035 0.77542 0.84364 1.21705 1.21746 1.20745 1.21493 1.00363 0.95253 0.82610 1.46002 1.56928 1.27960 1.05703 1.20397 0.79611 0.85754 0.84800 1.90711 1.40105 1.24438 1.86510 1.20835 0.96533 0.97687 0.83193 0.86378 1.22147 0.92323 1.03364 1.04054 1.45535 1.67469 1.13046 1.09828 1.20119 0.78734 0.87956 0.84398 1.90881 1.49853 1.13912 1.83471 1.21951 1.07103 0.89411 0.84348 1.48159 1.32390 1.17619 1.12291 1.27770 1.01785 1.01443 0.82815 1.75017 1.11353 1.03099 1.25847 1.78713 1.13250 1.20384 0.94706 1.79052 1.12789 0.94608 1.18414 0.93930 0.91030 0.92771 0.96135 0.96008 0.78197 0.93492 0.91073 0.91036 0.76102 0.91428 0.90785 0.90390 0.74885 0.83573 0.84252 0.74777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.94 37.16 0.33 -1.53 16 2 C -0.11 -1.53 2.46 -90.62 -0.22 -1.76 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.16 2.99 5.65 -4.04 -0.02 2.97 16 5 N -0.73 -17.61 5.33 -59.91 -0.32 -17.93 16 6 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 10 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 C 0.13 1.46 5.06 -4.04 -0.02 1.44 16 15 N -0.71 -6.48 5.18 -60.30 -0.31 -6.79 16 16 C 0.51 4.72 7.22 -10.98 -0.08 4.65 16 17 O -0.54 -6.58 15.84 5.55 0.09 -6.49 16 18 C 0.13 0.86 2.99 -69.08 -0.21 0.66 16 19 H 0.12 0.91 7.58 -51.93 -0.39 0.52 16 20 C -0.16 -0.88 9.38 37.16 0.35 -0.53 16 21 N -0.70 -3.79 4.95 -54.93 -0.27 -4.06 16 22 C 0.51 3.13 7.81 -10.99 -0.09 3.04 16 23 O -0.51 -5.62 15.37 5.55 0.09 -5.53 16 24 C 0.10 0.21 6.97 -5.19 -0.04 0.17 16 25 N -0.30 -1.96 3.19 -63.74 -0.20 -2.16 16 26 C 0.16 0.85 12.79 -90.38 -1.16 -0.31 16 27 N -0.31 -3.12 12.36 29.59 0.37 -2.75 16 28 N -0.08 -0.96 13.43 60.35 0.81 -0.15 16 29 N -0.06 -0.70 12.30 60.35 0.74 0.04 16 30 H 0.04 0.42 7.18 -51.93 -0.37 0.05 16 31 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 9.65 6.85 -40.82 -0.28 9.37 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.40 2.89 7.07 -40.82 -0.29 2.60 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.36 7.56 -51.93 -0.39 -0.03 16 43 H 0.41 1.58 7.79 -40.82 -0.32 1.26 16 44 H 0.15 -0.43 8.08 -51.93 -0.42 -0.85 16 45 H 0.14 0.00 8.14 -51.93 -0.42 -0.42 16 46 H 0.24 -0.20 8.06 -52.49 -0.42 -0.62 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -39.44 393.40 -5.39 -44.84 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.61 Total: 3.28 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.40 Total: 1.60 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 1.54 Total: -60.63 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.17 Total: -12.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.44 -5.39 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698769998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.793 kcal (2) G-P(sol) polarization free energy of solvation -39.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds