Wall clock time and date at job start Sat Apr 11 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47325 * 2 1 4 4 C 1.53008 * 109.47228 * 239.99647 * 2 1 3 5 5 N 1.46497 * 109.47068 * 185.00556 * 4 2 1 6 6 C 1.46505 * 119.99509 * 269.72258 * 5 4 2 7 7 C 1.34774 * 120.00634 * 89.99613 * 5 4 2 8 8 O 1.21685 * 119.99324 * 1.17488 * 7 5 4 9 9 C 1.46679 * 120.00414 * 181.16772 * 7 5 4 10 10 C 1.35653 * 126.13316 * 187.52375 * 9 7 5 11 11 N 1.30941 * 114.19651 * 180.02562 * 10 9 7 12 12 C 1.29429 * 117.36015 * 359.97438 * 11 10 9 13 13 C 1.50698 * 124.80292 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47503 * 89.97999 * 13 12 11 15 15 C 1.52994 * 109.47365 * 59.99449 * 14 13 12 16 16 C 1.53001 * 109.47334 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.46587 * 299.99827 * 14 13 12 18 18 S 1.70952 * 110.39361 * 359.72678 * 12 11 10 19 19 N 1.46499 * 109.46925 * 120.00014 * 2 1 3 20 20 C 1.36935 * 119.99811 * 275.00122 * 19 2 1 21 21 H 1.07998 * 120.00123 * 359.97438 * 20 19 2 22 22 C 1.38817 * 120.00120 * 180.02562 * 20 19 2 23 23 N 1.31621 * 119.99837 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99993 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47149 * 59.99839 * 24 22 20 26 26 H 1.48503 * 109.47343 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47423 * 299.99908 * 24 22 20 28 28 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47063 * 300.00443 * 1 2 3 30 30 H 1.09003 * 109.46367 * 60.00694 * 1 2 3 31 31 H 1.08995 * 109.47048 * 65.00024 * 4 2 1 32 32 H 1.09000 * 109.46563 * 305.00281 * 4 2 1 33 33 H 1.09000 * 109.47046 * 93.30636 * 6 5 4 34 34 H 1.09000 * 109.47062 * 213.30482 * 6 5 4 35 35 H 1.08995 * 109.47271 * 333.31054 * 6 5 4 36 36 H 1.08004 * 122.90298 * 0.02562 * 10 9 7 37 37 H 1.09009 * 109.47253 * 209.97544 * 13 12 11 38 38 H 1.08998 * 109.47629 * 329.97383 * 13 12 11 39 39 H 1.09004 * 109.46944 * 60.00053 * 15 14 13 40 40 H 1.09000 * 109.47664 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47390 * 300.00997 * 15 14 13 42 42 H 1.08999 * 109.46883 * 59.99901 * 16 14 13 43 43 H 1.08994 * 109.46673 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.46822 * 299.99547 * 16 14 13 45 45 H 1.09001 * 109.47218 * 60.00117 * 17 14 13 46 46 H 1.09002 * 109.46788 * 180.02562 * 17 14 13 47 47 H 1.09006 * 109.47394 * 299.99682 * 17 14 13 48 48 H 0.96999 * 120.00350 * 94.99739 * 19 2 1 49 49 H 0.97001 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2493 5 7 3.5001 -0.8266 -1.1905 6 6 4.3344 0.2309 -1.7666 7 6 4.0758 -1.8988 -0.6114 8 8 3.3830 -2.7897 -0.1564 9 6 5.5374 -1.9919 -0.5297 10 6 6.2480 -3.0677 -0.1080 11 7 7.5459 -2.8954 -0.1294 12 6 7.9872 -1.7500 -0.5398 13 6 9.4432 -1.3725 -0.6329 14 6 9.9798 -1.7463 -2.0161 15 6 9.1888 -0.9965 -3.0898 16 6 11.4578 -1.3624 -2.1107 17 6 9.8291 -3.2537 -2.2311 18 16 6.6851 -0.7290 -0.9693 19 7 2.0183 -0.6906 1.1962 20 6 2.1490 -0.0075 2.3757 21 1 1.8926 1.0405 2.4241 22 6 2.6122 -0.6617 3.5091 23 7 2.9253 -1.9388 3.4500 24 14 2.7912 0.2704 5.1179 25 1 1.4689 0.8073 5.5287 26 1 3.3000 -0.6479 6.1682 27 1 3.7463 1.3929 4.9362 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.7518 -0.1585 -2.1370 32 1 1.6054 -1.7199 -1.2950 33 1 4.5892 0.9549 -0.9926 34 1 5.2478 -0.2061 -2.1701 35 1 3.7870 0.7309 -2.5656 36 1 5.7835 -3.9868 0.2173 37 1 9.5506 -0.2985 -0.4797 38 1 10.0067 -1.9066 0.1321 39 1 9.2961 0.0774 -2.9365 40 1 9.5708 -1.2632 -4.0752 41 1 8.1357 -1.2695 -3.0225 42 1 12.0215 -1.8964 -1.3457 43 1 11.8401 -1.6292 -3.0959 44 1 11.5647 -0.2885 -1.9577 45 1 8.7760 -3.5268 -2.1638 46 1 10.2118 -3.5201 -3.2163 47 1 10.3926 -3.7880 -1.4661 48 1 2.2490 -1.6318 1.1527 49 1 3.2486 -2.3960 4.2421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700802071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:24 Heat of formation + Delta-G solvation = 17.301726 kcal Electronic energy + Delta-G solvation = -28463.046110 eV Core-core repulsion = 24745.472549 eV Total energy + Delta-G solvation = -3717.573561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.99776 -39.22964 -37.50565 -35.91458 -34.46969 -32.03217 -31.01006 -28.78561 -28.19624 -27.55837 -27.41808 -27.19881 -25.58863 -23.95771 -23.50371 -21.32108 -19.75152 -19.46674 -18.26361 -18.11868 -17.10181 -16.28399 -16.00304 -15.55853 -15.11225 -14.93914 -14.72531 -14.50840 -14.25384 -13.72722 -13.56596 -13.40909 -13.10072 -13.03682 -12.93019 -12.63474 -12.38735 -12.26218 -12.18209 -11.96540 -11.92256 -11.80750 -11.46978 -11.34521 -11.18252 -11.09290 -10.97325 -10.90153 -10.77195 -10.63642 -10.38341 -10.03165 -9.61807 -9.44925 -9.28481 -9.10283 -8.81002 -8.64582 -8.12918 -6.79665 -5.59180 -2.89140 0.53381 1.40373 1.81333 2.79274 3.29208 3.48417 3.52724 3.54668 3.71370 4.12320 4.52073 4.56207 4.67553 4.72128 4.86207 5.07792 5.13571 5.24422 5.33002 5.38850 5.42341 5.45780 5.53344 5.55933 5.60174 5.65489 5.67424 5.68039 5.71129 5.76482 5.78114 5.86327 5.98990 6.00906 6.07306 6.10492 6.22287 6.26893 6.37065 6.39501 6.66740 6.79809 6.91356 7.14064 7.66498 7.79134 7.89654 8.55189 8.64680 9.69379 10.31745 10.69641 11.60923 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003634 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.997961 B = 7702.701760 C = 8744.076043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.044 0.956 4 C 0.112 3.888 5 N -0.603 5.603 6 C 0.070 3.930 7 C 0.601 3.399 8 O -0.500 6.500 9 C -0.272 4.272 10 C 0.115 3.885 11 N -0.475 5.475 12 C 0.027 3.973 13 C -0.037 4.037 14 C -0.063 4.063 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.140 4.140 18 S 0.180 5.820 19 N -0.721 5.721 20 C -0.242 4.242 21 H 0.064 0.936 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.899 3.101 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.288 1.288 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.185 0.815 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.398 0.602 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.467 4.080 -17.522 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.011 4.011 5 N -0.336 5.336 6 C -0.076 4.076 7 C 0.387 3.613 8 O -0.376 6.376 9 C -0.395 4.395 10 C -0.041 4.041 11 N -0.189 5.189 12 C -0.248 4.248 13 C -0.077 4.077 14 C -0.064 4.064 15 C -0.209 4.209 16 C -0.197 4.197 17 C -0.197 4.197 18 S 0.438 5.562 19 N -0.367 5.367 20 C -0.373 4.373 21 H 0.082 0.918 22 C -0.207 4.207 23 N -0.566 5.566 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.215 1.215 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.202 0.798 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.236 0.764 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.471 4.308 -17.342 22.378 hybrid contribution -0.287 -0.410 1.511 1.591 sum 13.184 3.898 -15.832 20.968 Atomic orbital electron populations 1.22413 0.99002 1.01047 0.99971 1.20651 0.92119 0.95558 0.87458 0.93839 1.21925 0.78134 1.02449 0.98543 1.47348 1.07085 1.20623 1.58554 1.21969 0.94577 0.91664 0.99363 1.16563 0.84650 0.82247 0.77807 1.90841 1.62451 1.39037 1.45240 1.25778 0.98744 0.99112 1.15887 1.22098 0.86954 0.99470 0.95618 1.66266 1.14338 1.21172 1.17147 1.27715 1.02449 0.94387 1.00204 1.20421 0.87113 1.01767 0.98431 1.20506 0.95573 0.96649 0.93691 1.22064 1.00437 1.00090 0.98351 1.21847 0.94381 1.01392 1.02039 1.21869 1.02751 0.94011 1.01074 1.84143 0.95604 1.18513 1.57986 1.42699 1.77664 1.11695 1.04653 1.19127 1.36951 0.93588 0.87678 0.91789 1.24733 1.02408 0.95889 0.97694 1.69725 1.50106 1.08330 1.28415 0.86410 0.77645 0.78627 0.84324 1.21416 1.21778 1.21543 0.93313 0.92578 0.94597 0.90763 0.89942 0.91575 0.91449 0.89703 0.79831 0.89714 0.88887 0.92297 0.92239 0.92348 0.92371 0.92331 0.92460 0.92078 0.93015 0.92355 0.76384 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.49 37.16 0.35 -2.64 16 2 C 0.15 3.11 3.20 -67.92 -0.22 2.89 16 3 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 4 C 0.11 1.89 5.19 -4.04 -0.02 1.87 16 5 N -0.60 -10.31 2.77 -183.13 -0.51 -10.82 16 6 C 0.07 0.87 9.04 59.85 0.54 1.42 16 7 C 0.60 12.19 6.91 -12.85 -0.09 12.10 16 8 O -0.50 -12.15 14.25 5.20 0.07 -12.07 16 9 C -0.27 -4.85 6.25 -37.10 -0.23 -5.08 16 10 C 0.11 2.04 11.10 -18.86 -0.21 1.83 16 11 N -0.48 -7.64 9.66 -11.50 -0.11 -7.75 16 12 C 0.03 0.36 4.93 -13.29 -0.07 0.29 16 13 C -0.04 -0.37 4.86 -27.88 -0.14 -0.50 16 14 C -0.06 -0.53 0.80 -154.51 -0.12 -0.65 16 15 C -0.15 -1.21 8.01 37.15 0.30 -0.91 16 16 C -0.14 -0.93 8.47 37.16 0.31 -0.61 16 17 C -0.14 -1.35 8.17 37.16 0.30 -1.05 16 18 S 0.18 2.37 16.49 -107.50 -1.77 0.60 16 19 N -0.72 -19.00 4.52 -53.42 -0.24 -19.24 16 20 C -0.24 -6.97 9.93 -15.06 -0.15 -7.12 16 21 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -29.32 13.06 55.49 0.72 -28.59 16 24 Si 0.90 23.27 29.55 -169.99 -5.02 18.24 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 32 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 33 H 0.07 0.88 7.92 -51.93 -0.41 0.46 16 34 H 0.07 0.77 4.39 -22.43 -0.10 0.67 16 35 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 36 H 0.18 3.30 8.06 -52.48 -0.42 2.88 16 37 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.54 6.01 -51.93 -0.31 0.23 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.72 6.64 -51.93 -0.34 0.38 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.40 11.48 5.07 -40.82 -0.21 11.27 16 49 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -35.53 396.60 -8.45 -43.97 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -8.04 Total: 8.26 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 0.47 Total: 1.43 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.14 Total: -66.41 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.77 Total: 0.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.53 -8.45 -43.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.273 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds