Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47325 * 2 1 4 4 C 1.53008 * 109.47228 * 239.99647 * 2 1 3 5 5 N 1.46497 * 109.47068 * 185.00556 * 4 2 1 6 6 C 1.46505 * 119.99509 * 269.72258 * 5 4 2 7 7 C 1.34774 * 120.00634 * 89.99613 * 5 4 2 8 8 O 1.21685 * 119.99324 * 1.17488 * 7 5 4 9 9 C 1.46679 * 120.00414 * 181.16772 * 7 5 4 10 10 C 1.35653 * 126.13316 * 187.52375 * 9 7 5 11 11 N 1.30941 * 114.19651 * 180.02562 * 10 9 7 12 12 C 1.29429 * 117.36015 * 359.97438 * 11 10 9 13 13 C 1.50698 * 124.80292 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47503 * 89.97999 * 13 12 11 15 15 C 1.52994 * 109.47365 * 59.99449 * 14 13 12 16 16 C 1.53001 * 109.47334 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.46587 * 299.99827 * 14 13 12 18 18 S 1.70952 * 110.39361 * 359.72678 * 12 11 10 19 19 N 1.46499 * 109.46925 * 120.00014 * 2 1 3 20 20 C 1.36935 * 119.99811 * 275.00122 * 19 2 1 21 21 H 1.07998 * 120.00123 * 359.97438 * 20 19 2 22 22 C 1.38817 * 120.00120 * 180.02562 * 20 19 2 23 23 N 1.31621 * 119.99837 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99993 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47149 * 59.99839 * 24 22 20 26 26 H 1.48503 * 109.47343 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47423 * 299.99908 * 24 22 20 28 28 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47063 * 300.00443 * 1 2 3 30 30 H 1.09003 * 109.46367 * 60.00694 * 1 2 3 31 31 H 1.08995 * 109.47048 * 65.00024 * 4 2 1 32 32 H 1.09000 * 109.46563 * 305.00281 * 4 2 1 33 33 H 1.09000 * 109.47046 * 93.30636 * 6 5 4 34 34 H 1.09000 * 109.47062 * 213.30482 * 6 5 4 35 35 H 1.08995 * 109.47271 * 333.31054 * 6 5 4 36 36 H 1.08004 * 122.90298 * 0.02562 * 10 9 7 37 37 H 1.09009 * 109.47253 * 209.97544 * 13 12 11 38 38 H 1.08998 * 109.47629 * 329.97383 * 13 12 11 39 39 H 1.09004 * 109.46944 * 60.00053 * 15 14 13 40 40 H 1.09000 * 109.47664 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47390 * 300.00997 * 15 14 13 42 42 H 1.08999 * 109.46883 * 59.99901 * 16 14 13 43 43 H 1.08994 * 109.46673 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.46822 * 299.99547 * 16 14 13 45 45 H 1.09001 * 109.47218 * 60.00117 * 17 14 13 46 46 H 1.09002 * 109.46788 * 180.02562 * 17 14 13 47 47 H 1.09006 * 109.47394 * 299.99682 * 17 14 13 48 48 H 0.96999 * 120.00350 * 94.99739 * 19 2 1 49 49 H 0.97001 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2493 5 7 3.5001 -0.8266 -1.1905 6 6 4.3344 0.2309 -1.7666 7 6 4.0758 -1.8988 -0.6114 8 8 3.3830 -2.7897 -0.1564 9 6 5.5374 -1.9919 -0.5297 10 6 6.2480 -3.0677 -0.1080 11 7 7.5459 -2.8954 -0.1294 12 6 7.9872 -1.7500 -0.5398 13 6 9.4432 -1.3725 -0.6329 14 6 9.9798 -1.7463 -2.0161 15 6 9.1888 -0.9965 -3.0898 16 6 11.4578 -1.3624 -2.1107 17 6 9.8291 -3.2537 -2.2311 18 16 6.6851 -0.7290 -0.9693 19 7 2.0183 -0.6906 1.1962 20 6 2.1490 -0.0075 2.3757 21 1 1.8926 1.0405 2.4241 22 6 2.6122 -0.6617 3.5091 23 7 2.9253 -1.9388 3.4500 24 14 2.7912 0.2704 5.1179 25 1 1.4689 0.8073 5.5287 26 1 3.3000 -0.6479 6.1682 27 1 3.7463 1.3929 4.9362 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.7518 -0.1585 -2.1370 32 1 1.6054 -1.7199 -1.2950 33 1 4.5892 0.9549 -0.9926 34 1 5.2478 -0.2061 -2.1701 35 1 3.7870 0.7309 -2.5656 36 1 5.7835 -3.9868 0.2173 37 1 9.5506 -0.2985 -0.4797 38 1 10.0067 -1.9066 0.1321 39 1 9.2961 0.0774 -2.9365 40 1 9.5708 -1.2632 -4.0752 41 1 8.1357 -1.2695 -3.0225 42 1 12.0215 -1.8964 -1.3457 43 1 11.8401 -1.6292 -3.0959 44 1 11.5647 -0.2885 -1.9577 45 1 8.7760 -3.5268 -2.1638 46 1 10.2118 -3.5201 -3.2163 47 1 10.3926 -3.7880 -1.4661 48 1 2.2490 -1.6318 1.1527 49 1 3.2486 -2.3960 4.2421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700802071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = -6.297922 kcal Electronic energy + Delta-G solvation = -28464.069467 eV Core-core repulsion = 24745.472549 eV Total energy + Delta-G solvation = -3718.596918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30000 -40.51102 -38.34312 -37.53536 -36.10267 -33.98289 -32.19719 -30.62122 -29.40778 -28.42764 -28.15047 -28.08321 -26.86990 -25.73447 -24.98560 -22.70208 -21.26539 -20.43386 -19.66837 -19.20050 -19.00706 -17.61682 -17.30735 -16.88768 -16.59533 -16.21438 -15.97529 -15.58110 -15.44204 -15.21174 -14.96141 -14.61923 -14.48312 -14.07994 -13.95051 -13.88948 -13.84775 -13.59244 -13.26655 -13.05366 -12.87051 -12.86057 -12.74753 -12.61420 -12.52323 -12.49260 -12.40273 -12.20128 -11.88955 -11.86134 -11.67209 -11.59864 -11.56543 -11.06218 -10.90176 -10.46025 -10.29945 -9.90758 -9.45717 -8.91517 -7.84837 -5.14280 -0.70328 0.21855 0.62494 1.40839 1.44688 1.48887 1.50973 1.98100 2.29681 2.56731 3.08566 3.44631 3.60007 3.80391 3.85733 3.94449 3.98798 4.05541 4.18895 4.23769 4.34120 4.47131 4.54056 4.55748 4.61907 4.62258 4.69523 4.76101 4.77685 4.85004 4.89303 4.92123 4.96187 5.04396 5.09296 5.09667 5.12447 5.24883 5.27549 5.36965 5.44019 5.48218 5.52988 5.53703 5.68132 6.29193 6.34670 6.68331 7.16951 7.41442 8.27112 8.48498 9.36318 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003634 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.997961 B = 7702.701760 C = 8744.076043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.052 0.948 4 C 0.116 3.884 5 N -0.601 5.601 6 C 0.061 3.939 7 C 0.589 3.411 8 O -0.559 6.559 9 C -0.316 4.316 10 C 0.103 3.897 11 N -0.498 5.498 12 C 0.029 3.971 13 C -0.041 4.041 14 C -0.058 4.058 15 C -0.154 4.154 16 C -0.135 4.135 17 C -0.139 4.139 18 S 0.262 5.738 19 N -0.740 5.740 20 C -0.235 4.235 21 H 0.073 0.927 22 C -0.079 4.079 23 N -0.962 5.962 24 Si 0.965 3.035 25 H -0.278 1.278 26 H -0.302 1.302 27 H -0.276 1.276 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.383 0.617 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.872 7.874 -19.788 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.070 0.930 4 C -0.007 4.007 5 N -0.332 5.332 6 C -0.083 4.083 7 C 0.377 3.623 8 O -0.439 6.439 9 C -0.440 4.440 10 C -0.055 4.055 11 N -0.213 5.213 12 C -0.244 4.244 13 C -0.082 4.082 14 C -0.060 4.060 15 C -0.211 4.211 16 C -0.192 4.192 17 C -0.197 4.197 18 S 0.521 5.479 19 N -0.384 5.384 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.272 4.272 23 N -0.613 5.613 24 Si 0.794 3.206 25 H -0.204 1.204 26 H -0.229 1.229 27 H -0.202 1.202 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.180 0.820 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.219 0.781 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.865 8.207 -19.678 25.991 hybrid contribution -0.692 -1.513 2.069 2.655 sum 14.173 6.694 -17.609 23.575 Atomic orbital electron populations 1.22251 0.97275 1.00547 1.01321 1.21016 0.93246 0.95667 0.86696 0.92984 1.21960 0.77998 1.01745 0.98987 1.47491 1.07703 1.20608 1.57436 1.22306 0.95148 0.90425 1.00384 1.17036 0.85521 0.82445 0.77285 1.90791 1.63979 1.41264 1.47860 1.25761 0.98791 1.01564 1.17870 1.21976 0.88033 0.99313 0.96130 1.66303 1.13312 1.22796 1.18876 1.28476 1.04460 0.93701 0.97806 1.20711 0.84595 1.03279 0.99592 1.20511 0.97097 0.95628 0.92749 1.22093 0.99275 1.01046 0.98705 1.21817 0.92495 1.02289 1.02630 1.21866 1.00877 0.95281 1.01665 1.83580 0.92672 1.15394 1.56269 1.42996 1.78062 1.11366 1.05997 1.19562 1.34579 0.93924 0.88640 0.90872 1.25549 1.03595 0.96726 1.01296 1.69951 1.52464 1.10256 1.28613 0.85342 0.77971 0.77311 0.79959 1.20408 1.22862 1.20214 0.94773 0.94610 0.89745 0.85037 0.92136 0.91884 0.90475 0.85155 0.81984 0.87146 0.88999 0.90550 0.91120 0.93939 0.92393 0.91441 0.91056 0.94761 0.91730 0.92946 0.78115 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.49 71.98 0.68 -4.67 16 2 C 0.14 5.60 3.20 45.00 0.14 5.74 16 3 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 4 C 0.12 3.70 5.19 86.38 0.45 4.14 16 5 N -0.60 -19.97 2.77 -851.51 -2.36 -22.33 16 6 C 0.06 1.33 9.04 127.77 1.15 2.49 16 7 C 0.59 24.89 6.91 86.45 0.60 25.48 16 8 O -0.56 -29.25 14.25 -4.30 -0.06 -29.31 16 9 C -0.32 -11.72 6.25 23.88 0.15 -11.57 16 10 C 0.10 3.97 11.10 84.23 0.93 4.91 16 11 N -0.50 -16.70 9.66 -190.31 -1.84 -18.53 16 12 C 0.03 0.75 4.93 88.46 0.44 1.19 16 13 C -0.04 -0.74 4.86 29.85 0.15 -0.60 16 14 C -0.06 -0.85 0.80 -52.18 -0.04 -0.89 16 15 C -0.15 -1.98 8.01 71.98 0.58 -1.40 16 16 C -0.14 -1.36 8.47 71.98 0.61 -0.75 16 17 C -0.14 -2.58 8.17 71.98 0.59 -2.00 16 18 S 0.26 6.52 16.49 -56.49 -0.93 5.58 16 19 N -0.74 -39.67 4.52 -322.92 -1.46 -41.13 16 20 C -0.23 -13.65 9.93 84.03 0.83 -12.82 16 21 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 23 N -0.96 -64.25 13.06 21.65 0.28 -63.97 16 24 Si 0.96 48.75 29.55 68.60 2.03 50.78 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 28 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.13 2.68 7.86 -2.39 -0.02 2.66 16 32 H 0.06 2.23 7.40 -2.39 -0.02 2.21 16 33 H 0.06 1.46 7.92 -2.39 -0.02 1.44 16 34 H 0.08 1.52 4.39 -21.14 -0.09 1.43 16 35 H 0.13 1.69 7.85 -2.39 -0.02 1.68 16 36 H 0.16 6.67 8.06 -2.91 -0.02 6.65 16 37 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.04 0.68 6.01 -2.39 -0.01 0.66 16 42 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.03 0.82 6.64 -2.39 -0.02 0.80 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.38 23.10 5.07 -92.71 -0.47 22.63 16 49 H 0.24 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -83.76 396.60 3.77 -79.99 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.38 Total: 34.04 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.73 Total: 4.87 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -5.38 Total: -145.96 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -0.93 Total: 5.58 kcal Total: -83.76 3.77 -79.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.696 kcal (2) G-P(sol) polarization free energy of solvation -83.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds