Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86805 * 119.99812 * 2 1 4 4 H 1.48494 * 109.47104 * 270.00322 * 3 2 1 5 5 H 1.48496 * 109.46922 * 30.00282 * 3 2 1 6 6 H 1.48494 * 109.46694 * 150.00707 * 3 2 1 7 7 C 1.38944 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99791 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00154 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00159 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00036 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47404 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00053 * 180.02562 * 13 12 10 15 15 O 1.21583 * 120.00085 * 5.07235 * 14 13 12 16 16 N 1.34778 * 119.99989 * 185.07014 * 14 13 12 17 17 C 1.47206 * 120.81256 * 355.11969 * 16 14 13 18 18 C 1.53192 * 108.85694 * 126.33513 * 17 16 14 19 19 C 1.53042 * 109.31596 * 54.64881 * 18 17 16 20 20 C 1.53047 * 109.53460 * 298.64056 * 19 18 17 21 21 H 1.09007 * 109.51846 * 301.38867 * 20 19 18 22 22 C 1.53003 * 109.49432 * 181.31739 * 20 19 18 23 23 C 1.52998 * 109.47197 * 175.15875 * 22 20 19 24 24 H 1.09002 * 110.45705 * 54.29350 * 23 22 20 25 25 C 1.54503 * 110.51557 * 176.89914 * 23 22 20 26 26 C 1.54478 * 104.06175 * 118.64219 * 25 23 22 27 27 O 1.44427 * 104.80586 * 23.98507 * 26 25 23 28 28 C 1.44653 * 105.36427 * 319.56223 * 27 26 25 29 29 C 1.46928 * 120.63129 * 174.96872 * 16 14 13 30 30 H 0.96997 * 119.99627 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99755 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47155 * 60.00537 * 12 10 9 33 33 H 1.09000 * 109.47529 * 300.01071 * 12 10 9 34 34 H 0.97003 * 119.99661 * 0.02562 * 13 12 10 35 35 H 1.09001 * 109.53562 * 6.52862 * 17 16 14 36 36 H 1.09001 * 109.67412 * 246.22288 * 17 16 14 37 37 H 1.09003 * 109.49399 * 294.69967 * 18 17 16 38 38 H 1.09003 * 109.52687 * 174.61903 * 18 17 16 39 39 H 1.08992 * 109.46122 * 178.61776 * 19 18 17 40 40 H 1.09004 * 109.44757 * 58.64560 * 19 18 17 41 41 H 1.09002 * 109.46755 * 295.15512 * 22 20 19 42 42 H 1.09000 * 109.47529 * 55.15819 * 22 20 19 43 43 H 1.08993 * 110.51579 * 237.28835 * 25 23 22 44 44 H 1.09008 * 110.50757 * 0.02562 * 25 23 22 45 45 H 1.09001 * 110.37289 * 142.81521 * 26 25 23 46 46 H 1.09004 * 110.37660 * 265.04100 * 26 25 23 47 47 H 1.08997 * 110.33983 * 281.59194 * 28 27 26 48 48 H 1.08995 * 110.50420 * 159.18458 * 28 27 26 49 49 H 1.09001 * 109.58684 * 113.82802 * 29 16 14 50 50 H 1.08993 * 109.58878 * 353.54175 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 7 2.1959 -5.9765 -0.0027 14 6 1.7466 -7.2471 -0.0038 15 8 0.5552 -7.4705 -0.0974 16 7 2.6181 -8.2701 0.0989 17 6 4.0698 -8.0261 0.1058 18 6 4.6775 -8.6900 1.3455 19 6 4.2902 -10.1705 1.3681 20 6 2.7673 -10.2998 1.4483 21 1 2.4057 -9.7961 2.3448 22 6 2.3828 -11.7797 1.5039 23 6 0.8715 -11.9068 1.7054 24 1 0.3365 -11.3470 0.9383 25 6 0.4459 -13.3920 1.6876 26 6 -0.1620 -13.6250 3.0886 27 8 -0.5817 -12.3159 3.5312 28 6 0.4700 -11.4147 3.1137 29 6 2.1379 -9.6542 0.2098 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6169 -4.9201 -0.8920 33 1 0.6174 -4.9212 0.8879 34 1 3.1495 -5.7992 -0.0022 35 1 4.2589 -6.9531 0.1362 36 1 4.5175 -8.4508 -0.7927 37 1 4.2982 -8.2011 2.2428 38 1 5.7632 -8.5985 1.3125 39 1 4.7417 -10.6507 2.2361 40 1 4.6482 -10.6532 0.4587 41 1 2.6668 -12.2642 0.5697 42 1 2.9016 -12.2590 2.3342 43 1 -0.3013 -13.5659 0.9134 44 1 1.3123 -14.0358 1.5357 45 1 -1.0183 -14.2963 3.0238 46 1 0.5890 -14.0334 3.7649 47 1 1.3183 -11.4808 3.7949 48 1 0.0990 -10.3909 3.0664 49 1 2.4264 -10.2135 -0.6802 50 1 1.0524 -9.6577 0.3077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377084611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = -123.736520 kcal Electronic energy + Delta-G solvation = -29857.267365 eV Core-core repulsion = 25690.825055 eV Total energy + Delta-G solvation = -4166.442309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.55195 -39.71626 -38.43881 -37.60690 -34.89955 -34.39891 -33.63097 -32.60462 -31.39333 -31.29830 -29.36748 -27.80610 -26.09414 -25.38699 -24.14896 -23.48291 -22.43916 -20.77337 -20.32408 -19.66632 -19.44382 -18.37484 -17.82224 -16.74350 -16.23286 -16.02792 -15.78909 -15.57589 -15.41534 -14.97572 -14.73913 -14.56639 -14.39694 -14.22331 -13.96886 -13.70911 -13.49411 -13.37793 -13.14986 -13.09536 -12.88631 -12.32284 -12.16911 -11.90579 -11.82688 -11.62858 -11.57156 -11.48038 -11.22043 -11.13578 -11.12173 -10.83491 -10.73470 -10.45911 -10.39999 -10.31497 -10.06493 -9.92311 -9.63293 -8.92035 -8.62174 -8.42759 -8.09480 -6.50873 -3.92939 2.71210 3.11838 3.22214 3.27498 3.36868 3.67303 3.75571 3.97870 4.12746 4.19259 4.30264 4.48737 4.56318 4.59661 4.69712 4.76096 4.86183 4.88619 4.94557 5.04658 5.10333 5.17838 5.20039 5.29609 5.34970 5.39040 5.42930 5.47371 5.53917 5.56822 5.60605 5.64888 5.67453 5.72911 5.83814 5.88035 5.93270 5.99130 6.02315 6.09324 6.13218 6.48825 6.51948 6.77102 7.05849 7.46420 7.92909 8.16860 8.45705 8.78794 9.05070 9.40126 9.87921 10.66010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.002037 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.721866 B =13741.356775 C =14607.718015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.709 3.291 15 O -0.596 6.596 16 N -0.631 5.631 17 C 0.108 3.892 18 C -0.135 4.135 19 C -0.112 4.112 20 C -0.106 4.106 21 H 0.077 0.923 22 C -0.101 4.101 23 C -0.127 4.127 24 H 0.090 0.910 25 C -0.151 4.151 26 C 0.043 3.957 27 O -0.377 6.377 28 C 0.049 3.951 29 C 0.135 3.865 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.093 0.907 49 H 0.061 0.939 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 -26.262 3.307 27.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.369 5.369 17 C -0.015 4.015 18 C -0.174 4.174 19 C -0.150 4.150 20 C -0.126 4.126 21 H 0.095 0.905 22 C -0.139 4.139 23 C -0.145 4.145 24 H 0.108 0.892 25 C -0.189 4.189 26 C -0.033 4.033 27 O -0.296 6.296 28 C -0.028 4.028 29 C 0.012 3.988 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.112 0.888 49 H 0.080 0.920 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.986 -26.129 3.362 26.812 hybrid contribution 0.496 0.943 -0.140 1.075 sum 5.482 -25.185 3.222 25.975 Atomic orbital electron populations 1.69619 1.05996 1.28513 1.49309 1.25332 0.95678 0.99936 0.96833 0.85808 0.79207 0.80509 0.78470 1.20282 1.20804 1.19341 1.19719 0.93441 0.81997 1.48248 0.87697 1.41788 1.09507 1.04448 1.62624 1.19760 0.88280 0.85012 0.85478 1.90481 1.13777 1.86891 1.57450 1.20791 0.91282 0.84925 1.03123 1.44968 1.11264 1.03363 1.78878 1.15751 0.84790 0.80589 0.77895 1.90889 1.14245 1.83932 1.58439 1.47236 1.05512 1.05873 1.78304 1.21706 0.80278 1.01278 0.98236 1.21916 1.00808 0.95971 0.98671 1.21551 0.94974 0.96305 1.02141 1.21619 0.95970 0.95608 0.99388 0.90483 1.21637 0.94128 0.95668 1.02429 1.22649 0.96936 0.96149 0.98796 0.89217 1.23014 1.01374 0.96350 0.98182 1.23396 0.99524 0.86444 0.93984 1.89178 1.43283 1.17380 1.79772 1.23588 0.90646 0.94949 0.93584 1.21494 1.00653 0.80112 0.96571 0.91590 0.76998 0.89962 0.90119 0.75399 0.89804 0.91345 0.91250 0.90558 0.91715 0.91716 0.91212 0.91355 0.90597 0.90423 0.89321 0.92491 0.92199 0.88848 0.92039 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.69 5.29 -10.97 -0.06 -13.74 16 10 C 0.43 9.91 7.85 -10.99 -0.09 9.83 16 11 O -0.60 -15.31 15.24 5.55 0.08 -15.23 16 12 C 0.13 2.42 6.16 -5.19 -0.03 2.39 16 13 N -0.73 -12.61 5.44 -66.42 -0.36 -12.97 16 14 C 0.71 11.91 8.30 -86.92 -0.72 11.18 16 15 O -0.60 -11.81 15.78 5.29 0.08 -11.72 16 16 N -0.63 -8.02 2.98 -178.28 -0.53 -8.55 16 17 C 0.11 1.10 6.44 -3.56 -0.02 1.08 16 18 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 19 C -0.11 -0.77 5.17 -26.69 -0.14 -0.91 16 20 C -0.11 -0.84 2.27 -90.50 -0.21 -1.04 16 21 H 0.08 0.71 7.42 -51.92 -0.39 0.32 16 22 C -0.10 -0.62 3.90 -26.73 -0.10 -0.72 16 23 C -0.13 -0.95 2.97 -89.05 -0.26 -1.21 16 24 H 0.09 0.78 6.51 -51.93 -0.34 0.44 16 25 C -0.15 -0.97 6.74 -25.17 -0.17 -1.14 16 26 C 0.04 0.32 7.64 37.93 0.29 0.61 16 27 O -0.38 -4.11 11.65 -35.23 -0.41 -4.52 16 28 C 0.05 0.44 6.36 37.94 0.24 0.68 16 29 C 0.13 1.40 5.32 -3.71 -0.02 1.38 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.41 6.88 4.91 -40.82 -0.20 6.68 16 35 H 0.08 0.95 5.59 -51.93 -0.29 0.66 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.38 8.02 -51.93 -0.42 -0.04 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.38 7.73 -51.92 -0.40 -0.02 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.48 7.78 -51.93 -0.40 0.08 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.09 1.15 5.63 -51.93 -0.29 0.86 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -32.39 393.49 -9.26 -41.65 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -8.06 Total: 13.87 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.64 Total: 12.98 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.23 Total: -58.50 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.24 Total: -31.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.39 -9.26 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377084611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.086 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds