Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86806 * 119.99631 * 2 1 4 4 H 1.48503 * 109.46689 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47221 * 299.99973 * 3 2 1 6 6 H 1.48498 * 109.47100 * 59.99821 * 3 2 1 7 7 C 1.38948 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00101 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99644 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00426 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47196 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99719 * 179.97438 * 13 12 10 15 15 O 1.21587 * 120.00445 * 355.29172 * 14 13 12 16 16 N 1.34784 * 120.00044 * 175.29030 * 14 13 12 17 17 C 1.46921 * 120.62918 * 4.91276 * 16 14 13 18 18 C 1.53196 * 108.77833 * 233.59108 * 17 16 14 19 19 C 1.53049 * 109.30672 * 305.36397 * 18 17 16 20 20 C 1.53042 * 109.53732 * 61.36562 * 19 18 17 21 21 H 1.08993 * 109.52217 * 58.60068 * 20 19 18 22 22 C 1.52996 * 109.49248 * 178.68083 * 20 19 18 23 23 C 1.53000 * 109.47496 * 294.27297 * 22 20 19 24 24 H 1.08999 * 110.98394 * 59.42436 * 23 22 20 25 25 C 1.55450 * 111.18611 * 183.58308 * 23 22 20 26 26 C 1.54377 * 102.18824 * 152.00883 * 25 23 22 27 27 O 1.43236 * 107.66283 * 338.74066 * 26 25 23 28 28 C 1.43640 * 109.97274 * 358.24374 * 27 26 25 29 29 C 1.46924 * 120.63285 * 184.89459 * 16 14 13 30 30 H 0.96996 * 119.99779 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00170 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47252 * 59.99561 * 12 10 9 33 33 H 1.09002 * 109.46480 * 299.99780 * 12 10 9 34 34 H 0.96994 * 120.00219 * 359.97438 * 13 12 10 35 35 H 1.09003 * 109.59086 * 353.37520 * 17 16 14 36 36 H 1.08996 * 109.59041 * 113.65375 * 17 16 14 37 37 H 1.08995 * 109.49908 * 65.31279 * 18 17 16 38 38 H 1.09003 * 109.49848 * 185.41680 * 18 17 16 39 39 H 1.08995 * 109.45860 * 301.34490 * 19 18 17 40 40 H 1.08997 * 109.45640 * 181.38575 * 19 18 17 41 41 H 1.09011 * 109.46910 * 174.27409 * 22 20 19 42 42 H 1.09002 * 109.47538 * 54.27461 * 22 20 19 43 43 H 1.09000 * 110.83524 * 33.85293 * 25 23 22 44 44 H 1.09005 * 110.92152 * 270.19457 * 25 23 22 45 45 H 1.08994 * 109.83376 * 219.17954 * 26 25 23 46 46 H 1.09004 * 109.82715 * 98.29795 * 26 25 23 47 47 H 1.08999 * 110.31433 * 143.34662 * 28 27 26 48 48 H 1.09007 * 110.30928 * 265.41547 * 28 27 26 49 49 H 1.08999 * 109.58830 * 6.61935 * 29 16 14 50 50 H 1.09000 * 109.70382 * 246.26779 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7468 -7.2470 -0.0017 15 8 0.5548 -7.4705 0.0851 16 7 2.6189 -8.2701 -0.0980 17 6 4.0670 -8.0221 -0.0955 18 6 4.6834 -8.6873 -1.3301 19 6 4.2995 -10.1687 -1.3515 20 6 2.7774 -10.3017 -1.4404 21 1 2.4199 -9.8007 -2.3399 22 6 2.3966 -11.7825 -1.4949 23 6 2.9171 -12.3954 -2.7965 24 1 4.0008 -12.3017 -2.8661 25 6 2.4745 -13.8792 -2.9351 26 6 2.4252 -14.0628 -4.4671 27 8 2.2988 -12.7636 -5.0568 28 6 2.2216 -11.7636 -4.0285 29 6 2.1395 -9.6547 -0.2070 30 1 -0.4849 0.8400 -0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6176 -4.9205 -0.8913 33 1 0.6170 -4.9208 0.8887 34 1 3.1496 -5.7991 -0.0019 35 1 4.2540 -6.9487 -0.1272 36 1 4.5084 -8.4432 0.8078 37 1 4.3083 -8.2012 -2.2307 38 1 5.7687 -8.5933 -1.2904 39 1 4.6533 -10.6487 -0.4392 40 1 4.7571 -10.6499 -2.2158 41 1 1.3116 -11.8803 -1.4555 42 1 2.8394 -12.3031 -0.6457 43 1 1.4897 -14.0328 -2.4940 44 1 3.2098 -14.5481 -2.4877 45 1 1.5668 -14.6771 -4.7385 46 1 3.3436 -14.5378 -4.8123 47 1 2.7480 -10.8608 -4.3384 48 1 1.1805 -11.5344 -3.8010 49 1 1.0546 -9.6586 -0.3123 50 1 2.4220 -10.2128 0.6856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377084613.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = -123.996351 kcal Electronic energy + Delta-G solvation = -29626.924958 eV Core-core repulsion = 25460.471381 eV Total energy + Delta-G solvation = -4166.453576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55426 -39.80607 -38.45593 -37.63555 -34.94283 -34.43501 -33.66158 -32.41668 -31.55365 -31.35412 -29.64241 -27.73186 -26.24591 -25.37737 -24.19612 -23.12860 -22.30214 -21.42168 -20.11176 -19.67280 -19.44561 -18.36140 -17.81807 -17.10397 -16.42512 -16.05203 -15.59312 -15.57266 -15.34474 -14.93562 -14.62077 -14.50339 -14.42557 -14.27029 -14.02660 -13.90075 -13.69059 -13.37694 -13.30887 -13.12548 -12.86619 -12.30610 -12.12495 -11.94138 -11.91072 -11.65591 -11.62182 -11.51593 -11.32363 -11.14519 -11.11658 -10.86917 -10.73053 -10.54984 -10.41049 -10.32494 -9.93034 -9.86870 -9.64700 -8.92370 -8.62515 -8.42836 -8.09786 -6.51317 -3.93316 2.70410 3.10194 3.22433 3.29046 3.35844 3.51395 3.75196 3.96415 4.02731 4.15536 4.22630 4.42772 4.53933 4.55620 4.65359 4.73768 4.83302 4.87270 4.89028 5.02636 5.11346 5.17486 5.19601 5.24053 5.28337 5.34386 5.41295 5.43272 5.49538 5.54391 5.58453 5.60952 5.64268 5.73192 5.80607 5.86922 5.91728 5.98685 6.01698 6.08838 6.13454 6.49593 6.64071 6.76456 7.05202 7.46332 7.92837 8.16338 8.45337 8.78122 9.04864 9.39831 9.87564 10.65637 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.001851 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.026606 B =15120.846276 C =15257.666888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.631 5.631 17 C 0.109 3.891 18 C -0.136 4.136 19 C -0.114 4.114 20 C -0.106 4.106 21 H 0.077 0.923 22 C -0.101 4.101 23 C -0.122 4.122 24 H 0.089 0.911 25 C -0.153 4.153 26 C 0.050 3.950 27 O -0.387 6.387 28 C 0.054 3.946 29 C 0.137 3.863 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -26.570 -3.516 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.410 3.590 15 O -0.476 6.476 16 N -0.368 5.368 17 C -0.015 4.015 18 C -0.174 4.174 19 C -0.151 4.151 20 C -0.125 4.125 21 H 0.096 0.904 22 C -0.139 4.139 23 C -0.140 4.140 24 H 0.108 0.892 25 C -0.190 4.190 26 C -0.027 4.027 27 O -0.306 6.306 28 C -0.022 4.022 29 C 0.013 3.987 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.062 -26.457 -3.673 27.390 hybrid contribution 0.279 0.928 0.237 0.998 sum 6.341 -25.528 -3.437 26.528 Atomic orbital electron populations 1.69626 1.06002 1.28408 1.49406 1.25332 0.95673 0.99936 0.96837 0.85756 0.79660 0.80834 0.77818 1.19152 1.20621 1.20626 1.19775 0.93478 0.81985 1.48131 0.87630 1.41793 1.09504 1.04454 1.62642 1.19761 0.88282 0.85014 0.85461 1.90482 1.13775 1.86889 1.57418 1.20792 0.91286 0.84931 1.03122 1.44972 1.11276 1.03361 1.78854 1.15756 0.84800 0.80604 0.77876 1.90887 1.14230 1.83948 1.58507 1.47156 1.05516 1.05825 1.78348 1.21664 0.80317 1.01261 0.98260 1.21924 1.00780 0.95996 0.98693 1.21610 0.95099 0.96255 1.02158 1.21616 0.96117 0.95338 0.99441 0.90431 1.21477 1.01358 0.94607 0.96428 1.22932 1.01280 0.94262 0.95543 0.89236 1.23219 1.02755 0.96824 0.96251 1.23100 1.01298 0.85882 0.92390 1.88413 1.95096 1.15381 1.31749 1.23500 1.00227 0.91796 0.86705 1.21416 1.00541 0.80081 0.96632 0.91644 0.77010 0.90110 0.89964 0.75376 0.89800 0.91373 0.91248 0.90594 0.91712 0.91596 0.91134 0.91083 0.90325 0.90017 0.91593 0.91452 0.89676 0.91885 0.88888 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.66 5.29 -10.97 -0.06 -13.72 16 10 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 11 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16 12 C 0.13 2.41 6.16 -5.20 -0.03 2.37 16 13 N -0.73 -12.57 5.44 -66.42 -0.36 -12.93 16 14 C 0.71 11.87 8.30 -86.92 -0.72 11.14 16 15 O -0.60 -11.80 15.78 5.29 0.08 -11.71 16 16 N -0.63 -7.96 2.97 -178.51 -0.53 -8.49 16 17 C 0.11 1.10 6.43 -3.71 -0.02 1.08 16 18 C -0.14 -1.11 6.08 -26.60 -0.16 -1.28 16 19 C -0.11 -0.78 4.98 -26.68 -0.13 -0.91 16 20 C -0.11 -0.82 2.25 -90.50 -0.20 -1.02 16 21 H 0.08 0.71 7.16 -51.93 -0.37 0.34 16 22 C -0.10 -0.60 4.21 -26.73 -0.11 -0.71 16 23 C -0.12 -0.74 2.87 -88.29 -0.25 -1.00 16 24 H 0.09 0.53 6.64 -51.93 -0.34 0.19 16 25 C -0.15 -0.82 6.52 -24.71 -0.16 -0.99 16 26 C 0.05 0.34 7.79 37.88 0.30 0.64 16 27 O -0.39 -3.88 11.36 -35.23 -0.40 -4.28 16 28 C 0.05 0.44 6.34 38.18 0.24 0.68 16 29 C 0.14 1.40 5.70 -3.71 -0.02 1.38 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.40 9.50 7.90 -40.82 -0.32 9.17 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.41 6.86 4.89 -40.82 -0.20 6.66 16 35 H 0.08 0.95 5.57 -51.93 -0.29 0.66 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.41 6.55 -51.93 -0.34 0.07 16 41 H 0.07 0.44 8.13 -51.92 -0.42 0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.40 8.04 -51.93 -0.42 -0.02 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.69 7.96 -51.93 -0.41 0.27 16 48 H 0.06 0.52 8.02 -51.93 -0.42 0.10 16 49 H 0.09 1.12 7.03 -51.93 -0.37 0.75 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -32.39 393.58 -9.23 -41.61 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -8.06 Total: 13.14 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -1.61 Total: 13.34 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.23 Total: -58.33 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.23 Total: -31.19 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.39 -9.23 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377084613.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.383 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds