Wall clock time and date at job start Sat Apr 11 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99594 * 2 1 4 4 C 1.50701 * 109.47326 * 66.04716 * 3 2 1 5 5 H 1.07997 * 119.99498 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00167 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99952 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99804 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47095 * 60.00181 * 8 6 4 10 10 H 1.48504 * 109.46882 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47132 * 300.00041 * 8 6 4 12 12 C 1.46900 * 111.00255 * 236.05134 * 2 1 3 13 13 C 1.53000 * 109.47181 * 199.85046 * 12 2 1 14 14 H 1.09005 * 109.46720 * 300.45845 * 13 12 2 15 15 O 1.42901 * 109.47171 * 60.45603 * 13 12 2 16 16 C 1.52995 * 109.47382 * 180.45980 * 13 12 2 17 17 N 1.46902 * 109.47384 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00046 * 179.97438 * 17 16 13 19 19 H 1.09006 * 110.27453 * 34.29774 * 18 17 16 20 20 C 1.54592 * 110.39306 * 272.15463 * 18 17 16 21 21 C 1.54938 * 102.91967 * 219.08652 * 20 18 17 22 22 N 1.48526 * 103.22961 * 37.41217 * 21 20 18 23 23 C 1.46904 * 110.99987 * 200.28296 * 22 21 20 24 24 C 1.53000 * 109.46854 * 307.39319 * 23 22 21 25 25 F 1.39896 * 109.46887 * 60.00388 * 24 23 22 26 26 F 1.39903 * 109.46875 * 180.02562 * 24 23 22 27 27 F 1.39897 * 109.47298 * 300.00116 * 24 23 22 28 28 C 1.47904 * 105.81736 * 320.79278 * 22 21 20 29 29 H 1.08999 * 109.46560 * 188.77441 * 1 2 3 30 30 H 1.08997 * 109.46940 * 308.77489 * 1 2 3 31 31 H 1.09000 * 109.46720 * 68.77414 * 1 2 3 32 32 H 1.09004 * 109.47156 * 186.04371 * 3 2 1 33 33 H 1.08998 * 109.47416 * 306.04598 * 3 2 1 34 34 H 0.97001 * 119.99650 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47436 * 79.84393 * 12 2 1 36 36 H 1.09004 * 109.46851 * 319.84760 * 12 2 1 37 37 H 0.96706 * 114.00123 * 60.00393 * 15 13 12 38 38 H 1.09006 * 109.47026 * 59.99600 * 16 13 12 39 39 H 1.09005 * 109.47083 * 299.99643 * 16 13 12 40 40 H 1.00903 * 110.99648 * 56.04457 * 17 16 13 41 41 H 1.09001 * 110.72434 * 337.44392 * 20 18 17 42 42 H 1.08995 * 110.72464 * 100.72539 * 20 18 17 43 43 H 1.09001 * 110.66534 * 278.97589 * 21 20 18 44 44 H 1.08997 * 110.66562 * 155.85006 * 21 20 18 45 45 H 1.08998 * 109.47007 * 67.39434 * 23 22 21 46 46 H 1.09000 * 109.46831 * 187.39578 * 23 22 21 47 47 H 1.08993 * 109.91746 * 265.97375 * 28 22 21 48 48 H 1.09006 * 109.91096 * 144.68512 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0275 3.3492 1.5289 7 7 2.7135 4.0013 0.6158 8 14 1.5825 4.1869 3.1381 9 1 2.1732 3.4294 4.2705 10 1 2.1157 5.5729 3.1387 11 1 0.1052 4.2243 3.2847 12 6 1.9955 -0.7659 -1.1376 13 6 3.4450 -1.1665 -0.8557 14 1 4.0464 -0.2704 -0.7027 15 8 3.4947 -1.9796 0.3184 16 6 3.9971 -1.9543 -2.0454 17 7 5.3889 -2.3385 -1.7749 18 6 5.9529 -3.0989 -2.8981 19 1 5.5474 -2.7349 -3.8422 20 6 5.6546 -4.6066 -2.7318 21 6 6.9660 -5.2747 -3.2157 22 7 8.0205 -4.3580 -2.7119 23 6 9.2754 -4.5411 -3.4534 24 6 9.6626 -6.0213 -3.4429 25 9 8.6495 -6.7726 -4.0482 26 9 10.8580 -6.1956 -4.1485 27 9 9.8347 -6.4490 -2.1221 28 6 7.4890 -2.9906 -2.8991 29 1 -0.3632 -1.0157 0.1568 30 1 -0.3633 0.6436 0.8012 31 1 -0.3633 0.3721 -0.9580 32 1 3.0797 1.3445 -0.1082 33 1 1.5610 1.9274 -0.8309 34 1 2.9886 4.9172 0.7781 35 1 1.9566 -0.1525 -2.0378 36 1 1.3924 -1.6622 -1.2824 37 1 2.9805 -2.7960 0.2535 38 1 3.9591 -1.3341 -2.9409 39 1 3.3956 -2.8505 -2.1983 40 1 5.4593 -2.8600 -0.9139 41 1 5.4613 -4.8485 -1.6867 42 1 4.8151 -4.9052 -3.3595 43 1 6.9913 -5.3290 -4.3041 44 1 7.0769 -6.2665 -2.7774 45 1 9.1413 -4.2079 -4.4825 46 1 10.0647 -3.9557 -2.9818 47 1 7.8321 -2.5859 -3.8512 48 1 7.8166 -2.3496 -2.0805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519386522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:33 Heat of formation + Delta-G solvation = -182.400034 kcal Electronic energy + Delta-G solvation = -30036.784533 eV Core-core repulsion = 25325.941643 eV Total energy + Delta-G solvation = -4710.842890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.51849 -48.09092 -47.90248 -39.71821 -38.06072 -35.91937 -34.90080 -32.46799 -32.08303 -29.83065 -29.06316 -27.53447 -27.13696 -25.08308 -23.64033 -23.28215 -21.82584 -21.51163 -20.89763 -20.00347 -18.98965 -18.84602 -17.83942 -16.65976 -16.35827 -16.23849 -15.83699 -15.66056 -15.04096 -14.89317 -14.80869 -14.69791 -14.59467 -14.42563 -14.29353 -14.13519 -14.04665 -13.97763 -13.58442 -13.29489 -13.06196 -12.70266 -12.55243 -12.49779 -12.19864 -11.93414 -11.88689 -11.63686 -11.54938 -11.40206 -11.12549 -11.10294 -10.87220 -10.71117 -10.62055 -10.32623 -9.73986 -9.60609 -9.11907 -9.06982 -8.46787 -8.38706 -7.18875 -5.98585 -3.99053 2.27899 3.09678 3.34654 3.36946 3.40676 3.44316 3.61405 3.90177 3.96132 4.22190 4.35605 4.46537 4.57936 4.74634 4.78684 4.81283 4.87960 4.97754 5.09151 5.22206 5.27871 5.35827 5.40669 5.41178 5.50310 5.55096 5.67448 5.72042 5.77182 5.79615 6.03602 6.13531 6.21668 6.25761 6.32406 6.54324 6.73300 6.93829 7.30519 7.34075 7.35289 7.82976 8.07747 8.13862 8.23861 8.58701 9.07753 9.64543 11.12446 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.001830 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.030695 B =15298.028007 C =15934.772962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.540 6.540 16 C 0.030 3.970 17 N -0.672 5.672 18 C 0.080 3.920 19 H 0.085 0.915 20 C -0.154 4.154 21 C 0.023 3.977 22 N -0.510 5.510 23 C 0.001 3.999 24 C 0.455 3.545 25 F -0.184 7.184 26 F -0.184 7.184 27 F -0.172 7.172 28 C 0.045 3.955 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.007 0.993 32 H 0.032 0.968 33 H -0.012 1.012 34 H 0.261 0.739 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.358 0.642 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.354 0.646 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.053 0.947 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.022 -21.069 -13.142 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.129 0.871 15 O -0.342 6.342 16 C -0.100 4.100 17 N -0.304 5.304 18 C -0.032 4.032 19 H 0.103 0.897 20 C -0.194 4.194 21 C -0.104 4.104 22 N -0.235 5.235 23 C -0.129 4.129 24 C 0.401 3.599 25 F -0.165 7.165 26 F -0.165 7.165 27 F -0.153 7.153 28 C -0.082 4.082 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.025 0.975 32 H 0.050 0.950 33 H 0.005 0.995 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.203 0.797 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.175 0.825 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.141 0.859 47 H 0.071 0.929 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.038 -20.127 -12.184 26.428 hybrid contribution -1.335 -0.413 -1.101 1.779 sum 10.703 -20.540 -13.285 26.701 Atomic orbital electron populations 1.22227 0.88950 0.99889 1.00041 1.62030 1.06439 1.17852 1.39149 1.19764 0.95539 0.81445 0.96464 1.21114 1.34702 0.96806 1.01730 0.91945 1.24986 0.95349 0.97383 0.96959 1.69946 1.38386 1.11493 1.34112 0.86558 0.78586 0.78295 0.83952 1.20106 1.21407 1.20376 1.22661 0.95937 0.98058 0.93697 1.21972 0.95210 0.93866 0.83316 0.87150 1.86714 1.73210 1.35799 1.38469 1.22702 0.88442 0.98730 1.00135 1.60399 1.18611 1.46676 1.04754 1.22405 0.94073 0.91125 0.95568 0.89731 1.23311 0.97085 0.96405 1.02592 1.23632 0.90807 0.97423 0.98559 1.64957 1.01614 1.05888 1.51033 1.23500 0.97756 0.90395 1.01266 1.20465 0.74477 0.91072 0.73911 1.93179 1.59935 1.79648 1.83756 1.93198 1.47793 1.96374 1.79162 1.93226 1.95139 1.91573 1.35407 1.23020 0.94288 0.88749 1.02169 0.93825 0.90449 0.97452 0.95008 0.99463 0.92932 0.94969 0.92417 0.79688 0.90441 0.95317 0.82499 0.90135 0.90765 0.92694 0.89164 0.90053 0.85856 0.92873 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.37 60.07 0.56 1.29 16 2 N -0.53 -11.38 4.56 -244.36 -1.11 -12.49 16 3 C 0.19 5.05 4.55 -4.97 -0.02 5.03 16 4 C -0.50 -14.39 8.39 -34.44 -0.29 -14.68 16 5 H 0.06 1.77 7.16 -52.49 -0.38 1.39 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.03 0.44 4.66 -3.82 -0.02 0.43 16 13 C 0.12 1.82 3.30 -26.73 -0.09 1.73 16 14 H 0.11 2.14 6.78 -51.93 -0.35 1.79 16 15 O -0.54 -8.61 12.55 -35.23 -0.44 -9.06 16 16 C 0.03 0.35 5.24 -3.83 -0.02 0.33 16 17 N -0.67 -7.44 6.20 -105.29 -0.65 -8.09 16 18 C 0.08 0.69 3.30 -66.36 -0.22 0.47 16 19 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 20 C -0.15 -1.19 6.70 -24.87 -0.17 -1.35 16 21 C 0.02 0.18 4.69 -1.90 -0.01 0.17 16 22 N -0.51 -4.10 5.32 -230.46 -1.23 -5.32 16 23 C 0.00 0.01 5.15 -3.82 -0.02 -0.01 16 24 C 0.46 3.49 3.07 37.16 0.11 3.60 16 25 F -0.18 -1.49 13.56 2.25 0.03 -1.46 16 26 F -0.18 -1.46 17.32 2.25 0.04 -1.42 16 27 F -0.17 -1.63 17.24 2.25 0.04 -1.59 16 28 C 0.05 0.37 6.50 -2.76 -0.02 0.35 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.63 6.66 -51.93 -0.35 1.29 16 31 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 32 H 0.03 0.89 6.63 -51.93 -0.34 0.55 16 33 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 36 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 37 H 0.36 4.28 9.05 45.56 0.41 4.69 16 38 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.35 4.09 7.53 -39.29 -0.30 3.80 16 41 H 0.08 0.68 7.59 -51.93 -0.39 0.28 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.38 7.36 -51.93 -0.38 0.00 16 44 H 0.09 0.74 6.97 -51.93 -0.36 0.37 16 45 H 0.08 0.39 7.81 -51.93 -0.41 -0.02 16 46 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.37 7.57 -51.93 -0.39 -0.02 16 48 H 0.10 1.00 7.93 -51.93 -0.41 0.58 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -31.61 389.27 -9.01 -40.62 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.97 Total: 3.42 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.29 Total: -1.19 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -2.26 Total: -52.13 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.44 Total: -9.06 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.11 Total: -4.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.61 -9.01 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519386522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.778 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds