Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00477 * 2 1 4 4 C 1.50710 * 109.46777 * 66.04630 * 3 2 1 5 5 H 1.07995 * 119.99746 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99730 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00204 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00020 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47121 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46802 * 299.99744 * 8 6 4 11 11 H 1.48502 * 109.47229 * 59.99490 * 8 6 4 12 12 C 1.46902 * 110.99662 * 236.04400 * 2 1 3 13 13 C 1.53002 * 109.47108 * 199.76951 * 12 2 1 14 14 H 1.09004 * 109.46908 * 302.16446 * 13 12 2 15 15 O 1.42896 * 109.47151 * 62.15880 * 13 12 2 16 16 C 1.52997 * 109.47095 * 182.16225 * 13 12 2 17 17 N 1.46902 * 109.47012 * 179.97438 * 16 13 12 18 18 C 1.46904 * 111.00039 * 179.97438 * 17 16 13 19 19 H 1.09003 * 110.62927 * 328.11191 * 18 17 16 20 20 C 1.55140 * 110.70117 * 91.40049 * 18 17 16 21 21 C 1.54907 * 101.64930 * 154.03743 * 20 18 17 22 22 N 1.47845 * 104.79932 * 322.92813 * 21 20 18 23 23 C 1.46896 * 110.99974 * 146.36000 * 22 21 20 24 24 C 1.53003 * 109.47185 * 69.16421 * 23 22 21 25 25 F 1.39898 * 109.46960 * 59.99403 * 24 23 22 26 26 F 1.39897 * 109.47272 * 179.97438 * 24 23 22 27 27 F 1.39902 * 109.46650 * 299.99857 * 24 23 22 28 28 C 1.47446 * 108.56486 * 24.09856 * 22 21 20 29 29 H 1.09001 * 109.46725 * 54.96056 * 1 2 3 30 30 H 1.08995 * 109.47441 * 174.96169 * 1 2 3 31 31 H 1.08999 * 109.46732 * 294.96822 * 1 2 3 32 32 H 1.09000 * 109.47180 * 306.04833 * 3 2 1 33 33 H 1.09001 * 109.47280 * 186.04663 * 3 2 1 34 34 H 0.97000 * 119.99666 * 0.02562 * 7 6 4 35 35 H 1.09000 * 109.47623 * 319.76926 * 12 2 1 36 36 H 1.08999 * 109.46804 * 79.77241 * 12 2 1 37 37 H 0.96704 * 113.99641 * 60.00341 * 15 13 12 38 38 H 1.08998 * 109.47000 * 299.99994 * 16 13 12 39 39 H 1.09001 * 109.47319 * 60.00304 * 16 13 12 40 40 H 1.00896 * 111.00353 * 303.95220 * 17 16 13 41 41 H 1.08996 * 110.99403 * 272.12551 * 20 18 17 42 42 H 1.08996 * 110.99358 * 35.94853 * 20 18 17 43 43 H 1.09005 * 110.37308 * 204.09922 * 21 20 18 44 44 H 1.09004 * 110.47085 * 81.80800 * 21 20 18 45 45 H 1.09008 * 109.47407 * 189.15975 * 23 22 21 46 46 H 1.09003 * 109.47770 * 309.16454 * 23 22 21 47 47 H 1.08995 * 109.88905 * 239.60744 * 28 22 21 48 48 H 1.08997 * 110.02665 * 118.48761 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5286 7 7 2.7122 4.0018 0.6151 8 14 1.5833 4.1867 3.1384 9 1 2.1154 5.5730 3.1383 10 1 0.1061 4.2230 3.2867 11 1 2.1759 3.4295 4.2701 12 6 1.9954 -0.7660 -1.1376 13 6 3.4455 -1.1650 -0.8566 14 1 4.0399 -0.2696 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0108 -1.9162 -2.0636 17 7 5.4033 -2.2987 -1.7940 18 6 5.9801 -3.0243 -2.9337 19 1 5.2130 -3.6027 -3.4486 20 6 6.6809 -2.0435 -3.9103 21 6 7.7308 -2.9652 -4.5794 22 7 8.1899 -3.8623 -3.4975 23 6 8.5121 -5.1964 -4.0211 24 6 9.7685 -5.1134 -4.8903 25 9 10.8380 -4.6437 -4.1204 26 9 10.0757 -6.3841 -5.3885 27 9 9.5408 -4.2366 -5.9564 28 6 7.1342 -3.9383 -2.4711 29 1 -0.3633 0.5900 -0.8414 30 1 -0.3634 -1.0236 -0.0902 31 1 -0.3633 0.4338 0.9316 32 1 1.5612 1.9273 -0.8309 33 1 3.0798 1.3443 -0.1083 34 1 2.9429 3.5668 -0.2207 35 1 1.3931 -1.6631 -1.2815 36 1 1.9552 -0.1531 -2.0380 37 1 2.9841 -2.8274 0.2040 38 1 3.4164 -2.8116 -2.2453 39 1 3.9751 -1.2718 -2.9420 40 1 5.9611 -1.4914 -1.5592 41 1 5.9767 -1.6554 -4.6462 42 1 7.1639 -1.2309 -3.3679 43 1 8.5638 -2.3758 -4.9627 44 1 7.2741 -3.5428 -5.3831 45 1 8.6895 -5.8797 -3.1905 46 1 7.6788 -5.5624 -4.6210 47 1 7.5220 -3.5901 -1.5138 48 1 6.7792 -4.9645 -2.3761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519386524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = -217.647004 kcal Electronic energy + Delta-G solvation = -29962.460135 eV Core-core repulsion = 25250.088821 eV Total energy + Delta-G solvation = -4712.371314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.187 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.06494 -48.62485 -48.52387 -40.45684 -39.43120 -37.43894 -35.97852 -34.82062 -32.87751 -30.95161 -29.78491 -28.97324 -28.30065 -26.41837 -25.01884 -24.15048 -23.00324 -22.36467 -22.09528 -21.51067 -19.53978 -19.42208 -18.98375 -18.61110 -17.70354 -17.10492 -16.80242 -16.48880 -16.27388 -16.08451 -15.71665 -15.63159 -15.46689 -15.35899 -15.10990 -15.02203 -14.99210 -14.74509 -14.72135 -14.58508 -14.29041 -13.99205 -13.77923 -13.57357 -13.36422 -13.22642 -13.01112 -12.86993 -12.68207 -12.65737 -12.52147 -12.35730 -12.27678 -12.25996 -11.93748 -11.81052 -11.66433 -10.90341 -10.64894 -10.57572 -9.59819 -9.33063 -9.06098 -8.68377 -6.38220 1.52679 1.61625 1.73656 1.80983 2.47861 2.55670 2.83284 2.90131 3.07187 3.13933 3.31076 3.38961 3.64298 3.66460 3.70698 3.90377 4.01151 4.11089 4.16483 4.24150 4.26808 4.29814 4.35915 4.44444 4.47514 4.52033 4.56887 4.64458 4.69853 4.81743 4.85313 4.93314 4.94915 5.01900 5.05334 5.11173 5.14456 5.66577 5.71605 5.78405 5.98510 6.04621 6.28035 6.38150 6.42467 6.64849 7.10824 7.41348 8.70334 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.001807 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.395330 B =15489.405854 C =16028.838251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.538 5.538 3 C 0.197 3.803 4 C -0.598 4.598 5 H 0.052 0.948 6 C -0.040 4.040 7 N -0.937 5.937 8 Si 1.120 2.880 9 H -0.283 1.283 10 H -0.268 1.268 11 H -0.272 1.272 12 C 0.024 3.976 13 C 0.126 3.874 14 H 0.055 0.945 15 O -0.551 6.551 16 C 0.045 3.955 17 N -0.674 5.674 18 C 0.074 3.926 19 H 0.098 0.902 20 C -0.159 4.159 21 C 0.041 3.959 22 N -0.539 5.539 23 C 0.008 3.992 24 C 0.455 3.545 25 F -0.187 7.187 26 F -0.187 7.187 27 F -0.191 7.191 28 C 0.061 3.939 29 H 0.007 0.993 30 H 0.087 0.913 31 H 0.052 0.948 32 H -0.047 1.047 33 H -0.001 1.001 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.027 0.973 37 H 0.379 0.621 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.341 0.659 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.137 0.863 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 -23.155 -14.027 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.261 5.261 3 C 0.070 3.930 4 C -0.636 4.636 5 H 0.071 0.929 6 C -0.237 4.237 7 N -0.575 5.575 8 Si 0.941 3.059 9 H -0.208 1.208 10 H -0.193 1.193 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.066 3.934 14 H 0.073 0.927 15 O -0.357 6.357 16 C -0.085 4.085 17 N -0.304 5.304 18 C -0.038 4.038 19 H 0.116 0.884 20 C -0.199 4.199 21 C -0.086 4.086 22 N -0.264 5.264 23 C -0.122 4.122 24 C 0.400 3.600 25 F -0.169 7.169 26 F -0.168 7.168 27 F -0.172 7.172 28 C -0.067 4.067 29 H 0.025 0.975 30 H 0.105 0.895 31 H 0.071 0.929 32 H -0.029 1.029 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.227 0.773 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.160 0.840 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.155 0.845 46 H 0.121 0.879 47 H 0.098 0.902 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.713 -21.890 -11.977 26.777 hybrid contribution -0.799 -0.482 -3.254 3.385 sum 8.915 -22.372 -15.231 28.495 Atomic orbital electron populations 1.22218 0.87256 1.01089 0.99956 1.61843 1.08014 1.14343 1.41933 1.19533 0.93341 0.85240 0.94838 1.22305 1.38191 1.00012 1.03072 0.92927 1.27423 0.93702 0.95966 1.06607 1.70940 1.38417 1.40171 1.08005 0.82893 0.77065 0.75081 0.70842 1.20847 1.19271 1.19717 1.22869 0.97454 0.98675 0.91522 1.21635 0.93690 0.92231 0.85876 0.92706 1.86645 1.74802 1.35264 1.38965 1.22527 0.90364 0.99974 0.95661 1.60314 1.02440 1.30139 1.37501 1.22835 0.96325 0.94993 0.89610 0.88404 1.23432 0.98213 0.98469 0.99783 1.23180 0.97707 0.94897 0.92826 1.63473 1.42205 1.08295 1.12416 1.23547 0.93592 0.94393 1.00650 1.20775 0.86981 0.72919 0.79328 1.93186 1.59789 1.88718 1.75176 1.93184 1.94253 1.40693 1.88698 1.93164 1.94580 1.70082 1.59410 1.22730 0.88843 1.00229 0.94861 0.97484 0.89489 0.92919 1.02943 0.98295 0.93894 0.88167 0.95516 0.77329 0.88518 0.94267 0.84043 0.90001 0.91410 0.90501 0.91520 0.84494 0.87880 0.90186 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.31 127.69 1.19 2.80 16 2 N -0.54 -22.89 4.59 -927.04 -4.25 -27.14 16 3 C 0.20 10.53 3.86 85.56 0.33 10.86 16 4 C -0.60 -34.96 8.58 25.60 0.22 -34.75 16 5 H 0.05 3.06 7.10 -2.91 -0.02 3.04 16 6 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 7 N -0.94 -58.80 13.65 21.45 0.29 -58.51 16 8 Si 1.12 51.42 29.90 68.60 2.05 53.47 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 C 0.02 0.76 4.65 86.30 0.40 1.16 16 13 C 0.13 3.80 3.25 30.59 0.10 3.90 16 14 H 0.05 2.12 6.73 -2.38 -0.02 2.11 16 15 O -0.55 -17.52 13.11 -148.98 -1.95 -19.47 16 16 C 0.04 0.92 5.21 86.30 0.45 1.37 16 17 N -0.67 -13.42 6.17 -485.48 -3.00 -16.42 16 18 C 0.07 1.07 3.27 46.10 0.15 1.22 16 19 H 0.10 1.19 7.82 -2.39 -0.02 1.17 16 20 C -0.16 -2.39 6.66 31.98 0.21 -2.17 16 21 C 0.04 0.58 5.09 86.77 0.44 1.02 16 22 N -0.54 -7.59 5.09 -885.52 -4.50 -12.10 16 23 C 0.01 0.08 4.69 86.30 0.40 0.48 16 24 C 0.45 6.53 3.26 71.98 0.23 6.76 16 25 F -0.19 -3.52 17.24 44.97 0.78 -2.74 16 26 F -0.19 -2.72 17.32 44.97 0.78 -1.94 16 27 F -0.19 -3.12 14.70 44.97 0.66 -2.46 16 28 C 0.06 0.83 6.61 86.65 0.57 1.40 16 29 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 30 H 0.09 2.51 7.85 -2.39 -0.02 2.49 16 31 H 0.05 2.18 7.01 -2.39 -0.02 2.16 16 32 H -0.05 -2.67 7.94 -2.39 -0.02 -2.69 16 33 H 0.00 -0.05 6.47 -2.39 -0.02 -0.07 16 34 H 0.25 15.98 7.22 -92.71 -0.67 15.31 16 35 H 0.10 2.44 7.75 -2.39 -0.02 2.43 16 36 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 37 H 0.38 8.64 9.05 -74.05 -0.67 7.97 16 38 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.34 7.84 8.21 -89.70 -0.74 7.10 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.23 7.77 -2.39 -0.02 1.21 16 43 H 0.08 1.25 7.52 -2.38 -0.02 1.24 16 44 H 0.07 0.76 7.35 -2.38 -0.02 0.74 16 45 H 0.14 0.91 8.03 -2.38 -0.02 0.89 16 46 H 0.10 0.60 7.85 -2.39 -0.02 0.58 16 47 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 48 H 0.08 0.82 7.56 -2.39 -0.02 0.80 16 Total: -1.00 -72.31 390.68 -4.30 -76.61 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.32 Total: 18.54 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.17 Total: -7.83 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -11.46 Total: -114.17 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.95 Total: -19.47 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 2.21 Total: -7.14 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -72.31 -4.30 -76.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519386524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.038 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds