Wall clock time and date at job start Sat Apr 11 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99941 * 2 1 4 4 C 1.50698 * 109.47536 * 66.04610 * 3 2 1 5 5 H 1.08000 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99770 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00155 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99707 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47026 * 89.99526 * 8 6 4 10 10 H 1.48500 * 109.47111 * 209.99993 * 8 6 4 11 11 H 1.48504 * 109.47089 * 329.99583 * 8 6 4 12 12 C 1.46896 * 111.00058 * 236.04098 * 2 1 3 13 13 C 1.52999 * 109.47091 * 293.95507 * 12 2 1 14 14 H 1.08992 * 109.47188 * 60.00120 * 13 12 2 15 15 O 1.42903 * 109.47030 * 299.99792 * 13 12 2 16 16 C 1.53006 * 109.46811 * 179.97438 * 13 12 2 17 17 N 1.46902 * 109.46626 * 184.99853 * 16 13 12 18 18 C 1.46905 * 110.99800 * 180.02562 * 17 16 13 19 19 H 1.09010 * 110.27140 * 32.91172 * 18 17 16 20 20 C 1.54598 * 110.30709 * 270.72088 * 18 17 16 21 21 C 1.54945 * 102.91715 * 219.12548 * 20 18 17 22 22 N 1.48532 * 103.22734 * 37.41414 * 21 20 18 23 23 C 1.46903 * 110.99858 * 200.28177 * 22 21 20 24 24 C 1.52995 * 109.46825 * 307.39451 * 23 22 21 25 25 F 1.39900 * 109.47321 * 60.00070 * 24 23 22 26 26 F 1.39903 * 109.47342 * 180.02562 * 24 23 22 27 27 F 1.39899 * 109.47431 * 299.99904 * 24 23 22 28 28 C 1.47906 * 105.81896 * 320.79232 * 22 21 20 29 29 H 1.09002 * 109.47131 * 183.96185 * 1 2 3 30 30 H 1.09008 * 109.47223 * 303.95468 * 1 2 3 31 31 H 1.08994 * 109.47370 * 63.95549 * 1 2 3 32 32 H 1.08998 * 109.47062 * 186.04835 * 3 2 1 33 33 H 1.08999 * 109.47126 * 306.04215 * 3 2 1 34 34 H 0.97000 * 119.99855 * 180.02562 * 7 6 4 35 35 H 1.09009 * 109.47270 * 173.95377 * 12 2 1 36 36 H 1.09001 * 109.47084 * 53.95651 * 12 2 1 37 37 H 0.96698 * 113.99763 * 300.00194 * 15 13 12 38 38 H 1.08993 * 109.46955 * 305.00200 * 16 13 12 39 39 H 1.09000 * 109.47050 * 65.00029 * 16 13 12 40 40 H 1.00904 * 111.00423 * 303.95194 * 17 16 13 41 41 H 1.08993 * 110.72191 * 337.47718 * 20 18 17 42 42 H 1.09000 * 110.72452 * 100.77173 * 20 18 17 43 43 H 1.09003 * 110.66541 * 278.97589 * 21 20 18 44 44 H 1.08991 * 110.66421 * 155.84945 * 21 20 18 45 45 H 1.09001 * 109.47121 * 67.39634 * 23 22 21 46 46 H 1.08999 * 109.46813 * 187.39256 * 23 22 21 47 47 H 1.09008 * 109.91501 * 265.97758 * 28 22 21 48 48 H 1.08999 * 109.91600 * 144.68825 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3496 1.5283 7 7 2.7120 4.0019 0.6147 8 14 1.5818 4.1875 3.1375 9 1 2.6584 3.9514 4.1327 10 1 1.4293 5.6470 2.9099 11 1 0.3039 3.6301 3.6490 12 6 1.9954 -0.7661 -1.1375 13 6 1.6314 -2.2427 -0.9701 14 1 0.5472 -2.3475 -0.9321 15 8 2.2009 -2.7391 0.2429 16 6 2.1792 -3.0404 -2.1553 17 7 1.7287 -4.4352 -2.0567 18 6 2.2373 -5.2333 -3.1803 19 1 3.2179 -4.8702 -3.4881 20 6 1.2471 -5.1819 -4.3664 21 6 1.2859 -6.6311 -4.9132 22 7 1.3983 -7.4556 -3.6828 23 6 1.9224 -8.7928 -3.9913 24 6 1.0847 -9.4245 -5.1047 25 9 1.1497 -8.6227 -6.2493 26 9 1.5834 -10.6983 -5.3982 27 9 -0.2455 -9.5305 -4.6846 28 6 2.3170 -6.7199 -2.7870 29 1 -0.3633 -1.0252 0.0710 30 1 -0.3634 0.5740 0.8525 31 1 -0.3634 0.4512 -0.9232 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.9866 4.9180 0.7766 35 1 3.0798 -0.6612 -1.1755 36 1 1.5611 -0.3874 -2.0627 37 1 3.1652 -2.6770 0.2789 38 1 1.8143 -2.6055 -3.0857 39 1 3.2687 -3.0087 -2.1421 40 1 1.9995 -4.8411 -1.1735 41 1 0.2452 -4.9265 -4.0216 42 1 1.5878 -4.4750 -5.1230 43 1 2.1549 -6.7771 -5.5548 44 1 0.3666 -6.8645 -5.4500 45 1 2.9589 -8.7103 -4.3186 46 1 1.8718 -9.4175 -3.0994 47 1 3.3356 -7.0849 -2.9189 48 1 2.0055 -6.8470 -1.7502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519386525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:44 Heat of formation + Delta-G solvation = -182.003626 kcal Electronic energy + Delta-G solvation = -29778.805848 eV Core-core repulsion = 25067.980147 eV Total energy + Delta-G solvation = -4710.825701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.187 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.56325 -48.13485 -47.94749 -39.75444 -38.17881 -35.93788 -34.97253 -32.53540 -32.19722 -29.99298 -29.05855 -27.62466 -26.92005 -25.43951 -23.73313 -23.40320 -21.91996 -21.27228 -20.84148 -20.11370 -19.03627 -18.89564 -17.85674 -16.64789 -16.35149 -16.21021 -16.09482 -15.85812 -15.20801 -14.96018 -14.89296 -14.78009 -14.63206 -14.45881 -14.35750 -14.15934 -14.10641 -13.96991 -13.80871 -13.43873 -13.15604 -12.96011 -12.63502 -12.27004 -12.23298 -11.96971 -11.90088 -11.56037 -11.51773 -11.32968 -11.15453 -11.11028 -10.88016 -10.74374 -10.63578 -10.28403 -10.00785 -9.62510 -9.17642 -9.11934 -8.62220 -8.43193 -7.19078 -6.02611 -4.03461 2.21868 3.01365 3.28865 3.33028 3.38636 3.42978 3.55314 3.80030 3.88081 4.10690 4.35657 4.42968 4.48802 4.64026 4.69776 4.73752 4.84555 4.91526 4.99613 5.12857 5.25037 5.26232 5.31179 5.36210 5.45237 5.50949 5.57204 5.64948 5.75161 5.88358 6.06878 6.11812 6.20258 6.22422 6.33794 6.41343 6.80237 6.83047 7.20410 7.27311 7.33404 7.80645 7.94960 8.10402 8.21165 8.56073 9.04757 9.60764 11.08348 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.041573 B = 0.001577 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.360121 B =17753.435489 C =17853.520071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.672 5.672 18 C 0.076 3.924 19 H 0.053 0.947 20 C -0.115 4.115 21 C 0.021 3.979 22 N -0.504 5.504 23 C -0.001 4.001 24 C 0.456 3.544 25 F -0.182 7.182 26 F -0.184 7.184 27 F -0.172 7.172 28 C 0.039 3.961 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.008 0.992 32 H 0.027 0.973 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.367 0.633 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.349 0.651 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.052 0.948 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -27.570 -13.580 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.305 5.305 18 C -0.034 4.034 19 H 0.071 0.929 20 C -0.153 4.153 21 C -0.106 4.106 22 N -0.229 5.229 23 C -0.131 4.131 24 C 0.401 3.599 25 F -0.164 7.164 26 F -0.165 7.165 27 F -0.153 7.153 28 C -0.089 4.089 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.027 0.973 32 H 0.045 0.955 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.213 0.787 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.170 0.830 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.141 0.859 47 H 0.070 0.930 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.651 -27.700 -13.104 30.650 hybrid contribution 1.840 1.009 -0.565 2.173 sum 1.189 -26.692 -13.669 30.011 Atomic orbital electron populations 1.22250 0.88885 0.99714 1.00356 1.62016 1.06937 1.17334 1.39036 1.19743 0.95201 0.81700 0.96636 1.21177 1.34654 0.96841 1.01685 0.91762 1.25001 0.95359 0.97354 0.97030 1.69959 1.38570 1.11462 1.34054 0.86479 0.78906 0.78349 0.83566 1.20640 1.21369 1.19822 1.22701 1.00306 0.93930 0.93566 1.21977 0.99062 0.90888 0.82673 0.87831 1.86605 1.24811 1.84859 1.38656 1.22749 0.97456 0.89378 1.00614 1.60529 1.63203 1.01855 1.04913 1.22381 0.96542 0.91684 0.92822 0.92927 1.22630 1.01559 0.95013 0.96120 1.23725 1.02240 0.93259 0.91397 1.64901 1.44813 0.99998 1.13178 1.23511 0.97006 0.94718 0.97819 1.20418 0.79863 0.76425 0.83155 1.93188 1.96278 1.72951 1.53980 1.93200 1.87421 1.41707 1.94192 1.93230 1.36400 1.95885 1.89774 1.23123 0.94226 0.92827 0.98685 0.93320 0.90731 0.97348 0.95466 0.99311 0.92979 0.91425 0.95330 0.78739 0.90345 0.94981 0.83031 0.88994 0.91010 0.92813 0.88905 0.90113 0.85950 0.92966 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.38 4.62 -244.37 -1.13 -12.51 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.50 -14.31 8.46 -34.44 -0.29 -14.60 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 C 0.02 0.42 4.62 -3.83 -0.02 0.40 16 13 C 0.11 1.56 3.07 -26.73 -0.08 1.48 16 14 H 0.10 1.56 6.55 -51.93 -0.34 1.22 16 15 O -0.55 -7.88 12.72 -35.23 -0.45 -8.33 16 16 C 0.03 0.30 5.21 -3.82 -0.02 0.28 16 17 N -0.67 -6.44 6.29 -105.29 -0.66 -7.10 16 18 C 0.08 0.60 3.33 -66.36 -0.22 0.38 16 19 H 0.05 0.40 7.82 -51.92 -0.41 0.00 16 20 C -0.11 -0.92 6.76 -24.86 -0.17 -1.09 16 21 C 0.02 0.16 4.69 -1.89 -0.01 0.15 16 22 N -0.50 -3.69 5.32 -230.45 -1.23 -4.92 16 23 C 0.00 0.00 5.15 -3.82 -0.02 -0.02 16 24 C 0.46 3.23 3.07 37.15 0.11 3.35 16 25 F -0.18 -1.42 13.56 2.25 0.03 -1.38 16 26 F -0.18 -1.35 17.32 2.25 0.04 -1.31 16 27 F -0.17 -1.53 17.24 2.25 0.04 -1.49 16 28 C 0.04 0.26 6.39 -2.76 -0.02 0.24 16 29 H 0.05 0.85 6.47 -51.93 -0.34 0.52 16 30 H 0.07 1.61 6.76 -51.92 -0.35 1.26 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.07 1.12 7.93 -51.92 -0.41 0.71 16 36 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.37 4.26 9.05 45.56 0.41 4.67 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.31 8.07 -51.93 -0.42 -0.10 16 40 H 0.35 3.31 7.57 -39.29 -0.30 3.01 16 41 H 0.09 0.89 8.06 -51.93 -0.42 0.48 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.36 7.36 -51.93 -0.38 -0.02 16 44 H 0.09 0.74 6.97 -51.93 -0.36 0.38 16 45 H 0.08 0.32 7.81 -51.93 -0.41 -0.09 16 46 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.27 7.57 -51.92 -0.39 -0.12 16 48 H 0.10 0.66 7.47 -51.93 -0.39 0.27 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -31.50 388.92 -9.04 -40.54 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.95 Total: 1.70 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.30 Total: -1.73 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -2.28 Total: -50.61 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.45 Total: -8.33 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.11 Total: -4.19 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.50 -9.04 -40.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519386525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.463 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds