Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47215 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00212 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00018 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00172 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00126 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.54200 * 324.99706 * 17 16 14 19 19 C 1.53175 * 109.54772 * 85.17944 * 17 16 14 20 20 C 1.53092 * 109.15243 * 176.87710 * 19 17 16 21 21 O 1.42905 * 109.42619 * 302.38449 * 20 19 17 22 22 C 1.42879 * 114.12805 * 61.10901 * 21 20 19 23 23 C 1.52985 * 109.51668 * 178.99800 * 22 21 20 24 24 C 1.52992 * 109.50988 * 299.76606 * 23 22 21 25 25 C 1.53009 * 109.47068 * 300.01757 * 24 23 22 26 26 C 1.53000 * 109.43605 * 60.04553 * 25 24 23 27 27 C 1.52982 * 109.52731 * 58.89589 * 22 21 20 28 28 C 1.53099 * 109.50695 * 298.97463 * 22 21 20 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 31 31 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 32 32 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 33 33 H 0.97005 * 119.99723 * 359.97438 * 13 12 10 34 34 H 0.97003 * 120.00343 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.52610 * 296.78463 * 19 17 16 36 36 H 1.09005 * 109.52510 * 56.97443 * 19 17 16 37 37 H 1.09010 * 109.47770 * 62.36542 * 20 19 17 38 38 H 1.09005 * 109.48449 * 182.38216 * 20 19 17 39 39 H 1.09004 * 109.46687 * 59.77892 * 23 22 21 40 40 H 1.09000 * 109.46206 * 179.75595 * 23 22 21 41 41 H 1.08999 * 109.47318 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.47395 * 60.01762 * 24 23 22 43 43 H 1.08997 * 109.47285 * 300.05633 * 25 24 23 44 44 H 1.08995 * 109.48150 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46891 * 179.97438 * 26 25 24 46 46 H 1.08999 * 109.46579 * 59.96405 * 26 25 24 47 47 H 1.09005 * 109.46422 * 180.24920 * 27 22 21 48 48 H 1.09000 * 109.46474 * 300.22648 * 27 22 21 49 49 H 1.08999 * 109.45261 * 297.55616 * 28 22 21 50 50 H 1.09005 * 109.59927 * 177.37597 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0490 -3.7518 0.0246 14 6 7.3740 -3.9981 0.0307 15 8 8.1642 -3.0739 0.0313 16 7 7.8233 -5.2687 0.0351 17 6 9.2636 -5.5364 0.0422 18 1 9.7785 -4.7769 -0.5460 19 6 9.7829 -5.5083 1.4830 20 6 11.2715 -5.8656 1.4873 21 8 11.4538 -7.1499 0.8876 22 6 11.0287 -7.2240 -0.4745 23 6 11.2933 -8.6299 -1.0167 24 6 12.7906 -8.9342 -0.9386 25 6 13.5632 -7.9116 -1.7744 26 6 13.2999 -6.5061 -1.2302 27 6 11.8027 -6.2011 -1.3081 28 6 9.5308 -6.9193 -0.5599 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3633 0.0059 31 1 5.9281 -1.8591 -0.8704 32 1 5.9199 -1.8544 0.9095 33 1 5.4186 -4.4891 0.0238 34 1 7.1929 -6.0061 0.0342 35 1 9.6466 -4.5104 1.8999 36 1 9.2325 -6.2331 2.0829 37 1 11.8265 -5.1178 0.9207 38 1 11.6369 -5.8886 2.5140 39 1 10.7430 -9.3584 -0.4211 40 1 10.9648 -8.6867 -2.0544 41 1 12.9785 -9.9358 -1.3254 42 1 13.1192 -8.8779 0.0992 43 1 13.2339 -7.9672 -2.8119 44 1 14.6299 -8.1285 -1.7192 45 1 13.8503 -5.7772 -1.8250 46 1 13.6284 -6.4510 -0.1924 47 1 11.4745 -6.2555 -2.3461 48 1 11.6154 -5.1999 -0.9200 49 1 8.9747 -7.6729 -0.0024 50 1 9.2145 -6.9296 -1.6030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582685058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -153.468994 kcal Electronic energy + Delta-G solvation = -29950.655100 eV Core-core repulsion = 25782.923494 eV Total energy + Delta-G solvation = -4167.731606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.83747 -40.99781 -40.10279 -37.54201 -36.36399 -36.09721 -35.29214 -33.84311 -32.85663 -32.49405 -31.51862 -29.37873 -27.95609 -26.21847 -24.78716 -23.96363 -23.17621 -21.83356 -21.48256 -21.15999 -20.59793 -20.21597 -19.45003 -17.83562 -17.44750 -16.99024 -16.94636 -16.80025 -16.65222 -16.07224 -15.90286 -15.77583 -15.56988 -15.26465 -15.03783 -14.87719 -14.60922 -14.34115 -14.22619 -14.13231 -13.99900 -13.67569 -13.34744 -13.10447 -13.08047 -12.96976 -12.53382 -12.45172 -12.43743 -12.05463 -12.00629 -11.91640 -11.79129 -11.58450 -11.48372 -11.38955 -11.22175 -10.69285 -10.65298 -10.41761 -10.32906 -10.31945 -9.84610 -8.45950 -6.07916 1.30927 1.33848 1.43429 1.55857 1.78310 2.09945 2.20166 2.76334 2.83228 3.10356 3.25654 3.53976 3.74927 3.79198 3.88592 3.97334 4.00430 4.09417 4.23617 4.25248 4.32485 4.39416 4.43123 4.44015 4.54755 4.60632 4.64088 4.71847 4.76893 4.77346 4.87931 4.99858 5.04196 5.09115 5.13466 5.20498 5.28638 5.31019 5.33113 5.37963 5.45310 5.47874 5.52166 5.61084 5.87738 5.93940 6.35598 6.48374 6.77701 7.00419 7.28102 7.51320 7.77701 8.70399 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.001848 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.334323 B =15145.835865 C =15385.880475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.139 3.861 13 N -0.727 5.727 14 C 0.706 3.294 15 O -0.628 6.628 16 N -0.729 5.729 17 C 0.164 3.836 18 H 0.075 0.925 19 C -0.162 4.162 20 C 0.065 3.935 21 O -0.375 6.375 22 C 0.126 3.874 23 C -0.102 4.102 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.149 4.149 28 C -0.145 4.145 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.410 0.590 34 H 0.409 0.591 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.717 -14.337 -1.862 33.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.010 3.990 13 N -0.385 5.385 14 C 0.406 3.594 15 O -0.509 6.509 16 N -0.384 5.384 17 C 0.059 3.941 18 H 0.093 0.907 19 C -0.201 4.201 20 C -0.012 4.012 21 O -0.294 6.294 22 C 0.086 3.914 23 C -0.140 4.140 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.186 4.186 28 C -0.183 4.183 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.247 0.753 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 29.880 -14.237 -1.772 33.146 hybrid contribution -1.192 0.829 0.065 1.454 sum 28.687 -13.409 -1.707 31.712 Atomic orbital electron populations 1.69781 1.08020 1.29453 1.49255 1.26070 0.96438 1.02596 0.95718 0.85445 0.79562 0.77032 0.80088 1.18054 1.19835 1.15618 1.19028 0.80963 0.95265 1.50790 0.91845 1.41919 1.06126 1.07427 1.66287 1.20513 0.90056 0.83859 0.82278 1.90523 1.70801 1.32319 1.56397 1.20680 0.89174 0.84225 1.04890 1.44729 1.05643 1.08770 1.79343 1.15923 0.81848 0.84053 0.77550 1.90876 1.55658 1.44387 1.59997 1.45079 1.08494 1.05364 1.79474 1.20894 0.79133 0.97727 0.96341 0.90659 1.22578 0.98060 1.02245 0.97263 1.22553 0.93762 0.85612 0.99304 1.87948 1.84152 1.31767 1.25530 1.21447 0.90951 0.96797 0.82211 1.21549 0.97539 0.93412 1.01479 1.21443 0.94345 0.98965 1.00463 1.21535 1.00220 0.94258 0.99495 1.21435 0.94997 0.97421 1.01341 1.22206 0.96591 0.98829 1.00992 1.22482 0.97642 0.95324 1.02837 0.90922 0.77224 0.88028 0.88188 0.75296 0.75521 0.92016 0.90745 0.92629 0.87599 0.91084 0.89432 0.91100 0.92323 0.91568 0.91619 0.91775 0.92327 0.90290 0.92170 0.89646 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.24 13.96 21.66 0.30 -53.93 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 3 Si 0.96 38.00 27.74 68.60 1.90 39.90 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.23 -7.88 6.51 99.48 0.65 -7.23 16 7 C -0.33 -18.77 10.16 84.04 0.85 -17.91 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -26.46 5.09 -306.97 -1.56 -28.02 16 10 C 0.45 19.32 7.85 87.66 0.69 20.01 16 11 O -0.61 -31.44 15.24 -3.07 -0.05 -31.49 16 12 C 0.14 4.55 6.15 85.63 0.53 5.08 16 13 N -0.73 -22.12 5.53 -482.31 -2.67 -24.79 16 14 C 0.71 20.60 8.53 179.06 1.53 22.13 16 15 O -0.63 -22.12 16.01 -4.01 -0.06 -22.18 16 16 N -0.73 -15.48 5.09 -457.25 -2.33 -17.81 16 17 C 0.16 3.09 2.23 45.11 0.10 3.19 16 18 H 0.08 1.71 6.07 -2.39 -0.01 1.69 16 19 C -0.16 -3.01 5.72 30.68 0.18 -2.83 16 20 C 0.06 1.02 6.52 72.01 0.47 1.49 16 21 O -0.37 -6.16 8.92 -148.98 -1.33 -7.49 16 22 C 0.13 1.71 0.68 -10.77 -0.01 1.70 16 23 C -0.10 -1.13 4.94 30.59 0.15 -0.98 16 24 C -0.11 -1.25 5.78 30.59 0.18 -1.08 16 25 C -0.12 -1.22 5.93 30.60 0.18 -1.04 16 26 C -0.11 -1.42 5.78 30.59 0.18 -1.24 16 27 C -0.15 -2.01 4.03 30.58 0.12 -1.89 16 28 C -0.14 -1.99 4.39 30.69 0.13 -1.85 16 29 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 30 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 31 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.41 12.38 7.45 -92.70 -0.69 11.69 16 34 H 0.41 6.83 8.62 -92.71 -0.80 6.03 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.06 0.88 6.35 -2.38 -0.02 0.86 16 38 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.80 7.69 -2.39 -0.02 0.78 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.83 7.69 -2.39 -0.02 0.81 16 47 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.06 0.96 4.98 -2.39 -0.01 0.94 16 49 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -73.01 386.79 -1.15 -74.16 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -1.10 Total: 46.86 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 5.75 Total: 24.79 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -6.25 Total: -124.55 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.44 Total: -61.16 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.90 kcal Total: -73.01 -1.15 -74.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582685058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.310 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds