Wall clock time and date at job start Sat Apr 11 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99593 * 2 1 4 4 H 1.48500 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46859 * 299.99887 * 3 2 1 6 6 H 1.48493 * 109.47202 * 59.99747 * 3 2 1 7 7 C 1.37869 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.87278 * 62.39560 * 9 7 2 11 11 C 1.55145 * 110.99359 * 298.54903 * 9 7 2 12 12 C 1.54313 * 103.02081 * 206.25330 * 11 9 7 13 13 N 1.47436 * 107.23514 * 22.28451 * 12 11 9 14 14 C 1.46895 * 111.00479 * 123.25643 * 13 12 11 15 15 C 1.50700 * 109.47051 * 69.87292 * 14 13 12 16 16 O 1.21234 * 120.00015 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.34771 * 119.99547 * 179.97438 * 17 15 14 19 19 O 1.21529 * 120.00653 * 0.02562 * 18 17 15 20 20 N 1.34784 * 119.99547 * 180.02562 * 18 17 15 21 21 C 1.46499 * 119.99971 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47022 * 275.00268 * 21 20 18 23 23 C 1.53005 * 109.47228 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47076 * 59.99471 * 23 22 21 25 25 C 1.52995 * 109.47524 * 300.00348 * 24 23 22 26 26 C 1.52999 * 109.47155 * 154.99817 * 21 20 18 27 27 C 1.47847 * 108.56690 * 0.98807 * 13 12 11 28 28 H 0.96997 * 120.00714 * 359.97438 * 1 2 3 29 29 H 0.96699 * 113.99613 * 297.60423 * 10 9 7 30 30 H 1.08995 * 110.70338 * 87.86763 * 11 9 7 31 31 H 1.09004 * 110.70110 * 324.63752 * 11 9 7 32 32 H 1.09002 * 109.88824 * 262.87633 * 12 11 9 33 33 H 1.09003 * 109.88883 * 141.69162 * 12 11 9 34 34 H 1.09004 * 109.47210 * 309.87514 * 14 13 12 35 35 H 1.08997 * 109.47605 * 189.87874 * 14 13 12 36 36 H 0.96995 * 120.00015 * 359.72695 * 17 15 14 37 37 H 0.96999 * 120.00044 * 0.02562 * 20 18 17 38 38 H 1.09007 * 109.46956 * 34.99803 * 21 20 18 39 39 H 1.08996 * 109.47227 * 299.99828 * 22 21 20 40 40 H 1.09001 * 109.47831 * 59.99902 * 22 21 20 41 41 H 1.09007 * 109.46829 * 299.99583 * 23 22 21 42 42 H 1.09006 * 109.47453 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47133 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.46786 * 60.00132 * 24 23 22 45 45 H 1.09007 * 109.46875 * 300.00190 * 25 24 23 46 46 H 1.08997 * 109.47382 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.47204 * 299.99930 * 26 21 20 48 48 H 1.08996 * 109.46825 * 60.00337 * 26 21 20 49 49 H 1.09004 * 110.37712 * 94.73235 * 27 13 12 50 50 H 1.08997 * 110.37682 * 217.07795 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4603 -2.6305 -1.1835 11 6 0.3743 -2.6347 1.2721 12 6 0.2542 -4.1628 1.4505 13 7 1.3924 -4.7760 0.7417 14 6 2.1867 -5.6155 1.6485 15 6 1.3962 -6.8443 2.0171 16 8 0.2814 -7.0052 1.5685 17 7 1.9284 -7.7646 2.8457 18 6 1.2211 -8.8633 3.1757 19 8 0.1037 -9.0246 2.7260 20 7 1.7532 -9.7834 4.0047 21 6 0.9847 -10.9780 4.3631 22 6 0.0667 -10.6583 5.5445 23 6 -0.7355 -11.9062 5.9193 24 6 0.2247 -13.0317 6.3093 25 6 1.1427 -13.3513 5.1278 26 6 1.9445 -12.1039 4.7529 27 6 2.2188 -3.6984 0.1571 28 1 -0.4851 0.8400 0.0004 29 1 -0.2253 -1.9548 -1.2752 30 1 -0.6067 -2.1869 1.1136 31 1 0.8704 -2.1841 2.1317 32 1 -0.6835 -4.5138 1.0197 33 1 0.2964 -4.4170 2.5096 34 1 2.4242 -5.0520 2.5508 35 1 3.1106 -5.9130 1.1524 36 1 2.8218 -7.6379 3.2014 37 1 2.6450 -9.6545 4.3639 38 1 0.3830 -11.2924 3.5102 39 1 0.6682 -10.3439 6.3974 40 1 -0.6171 -9.8562 5.2669 41 1 -1.3372 -12.2210 5.0665 42 1 -1.3893 -11.6786 6.7614 43 1 -0.3468 -13.9204 6.5767 44 1 0.8263 -12.7168 7.1620 45 1 0.5410 -13.6661 4.2751 46 1 1.8270 -14.1528 5.4059 47 1 2.5984 -12.3316 3.9111 48 1 2.5460 -11.7895 5.6057 49 1 3.0368 -3.4401 0.8296 50 1 2.6071 -4.0029 -0.8148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:08 Heat of formation + Delta-G solvation = -117.660943 kcal Electronic energy + Delta-G solvation = -29883.236530 eV Core-core repulsion = 25717.057678 eV Total energy + Delta-G solvation = -4166.178852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18452 -39.44051 -38.40649 -37.39786 -34.65749 -34.54605 -34.14603 -32.12153 -31.18244 -30.44142 -29.56932 -28.11993 -26.74616 -24.41339 -23.31806 -23.02428 -21.63241 -20.69157 -20.26714 -20.04704 -19.58911 -18.70089 -17.15152 -16.98356 -16.19465 -16.11787 -15.42496 -15.22830 -14.94703 -14.87259 -14.68554 -14.51131 -14.31940 -13.99246 -13.79539 -13.67922 -13.25513 -12.90384 -12.61456 -12.51331 -12.35175 -12.23146 -11.71150 -11.67870 -11.57103 -11.25395 -11.23421 -11.11267 -11.06232 -10.87996 -10.81777 -10.71141 -10.60992 -10.40272 -10.29141 -10.02924 -9.84587 -9.43553 -9.31084 -9.18915 -8.60069 -8.05059 -7.64479 -6.20435 -4.29359 2.22967 2.23970 3.20477 3.29439 3.30005 3.32576 3.70110 4.24629 4.28624 4.33002 4.51611 4.60497 4.72249 4.73359 4.83093 5.01734 5.06165 5.07652 5.07889 5.20392 5.33962 5.35153 5.42572 5.57595 5.63027 5.66068 5.69903 5.70212 5.82637 5.91119 5.92713 5.99435 6.08195 6.10149 6.17551 6.23527 6.45826 6.51790 6.67818 6.91056 7.09694 7.38858 7.41167 7.50881 7.60574 7.66903 7.82794 8.15227 8.20761 8.33307 8.73131 9.39609 9.55250 10.86471 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034673 B = 0.001855 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.351831 B =15089.071380 C =15178.010052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.252 3.748 10 O -0.577 6.577 11 C -0.146 4.146 12 C 0.052 3.948 13 N -0.512 5.512 14 C 0.036 3.964 15 C 0.511 3.489 16 O -0.440 6.440 17 N -0.696 5.696 18 C 0.694 3.306 19 O -0.530 6.530 20 N -0.739 5.739 21 C 0.161 3.839 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.125 4.125 27 C 0.060 3.940 28 H 0.266 0.734 29 H 0.377 0.623 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.406 0.594 37 H 0.396 0.604 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -22.853 14.762 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.212 3.788 10 O -0.385 6.385 11 C -0.185 4.185 12 C -0.075 4.075 13 N -0.236 5.236 14 C -0.097 4.097 15 C 0.296 3.704 16 O -0.304 6.304 17 N -0.364 5.364 18 C 0.394 3.606 19 O -0.401 6.401 20 N -0.396 5.396 21 C 0.056 3.944 22 C -0.170 4.170 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.164 4.164 27 C -0.067 4.067 28 H 0.076 0.924 29 H 0.227 0.773 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.240 0.760 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.384 -23.795 13.518 27.891 hybrid contribution 1.442 2.080 1.364 2.875 sum 6.826 -21.715 14.882 27.196 Atomic orbital electron populations 1.69752 1.05935 1.27315 1.50164 1.25011 0.94978 0.99432 0.93737 0.86426 0.80075 0.83120 0.77667 1.19702 1.20789 1.20973 1.21557 0.93518 0.90614 1.51789 0.92011 1.19516 0.86857 0.90386 0.82087 1.86153 1.51326 1.56739 1.44304 1.23305 1.02806 0.91927 1.00471 1.22828 0.94500 0.95569 0.94623 1.63388 1.08357 1.21589 1.30287 1.22157 0.96938 0.92680 0.97899 1.21123 0.87816 0.83897 0.77530 1.90834 1.18066 1.74608 1.46896 1.44333 1.20871 1.21980 1.49185 1.16189 0.84730 0.79914 0.79802 1.91072 1.17471 1.76379 1.55152 1.45375 1.20297 1.22891 1.51020 1.20897 0.92481 0.82997 0.97979 1.21955 0.98785 0.98534 0.97754 1.21503 0.97813 0.94704 1.01563 1.21579 0.97803 0.98578 0.97967 1.21473 0.98429 0.96751 0.98746 1.21799 0.97953 0.94882 1.01723 1.23048 0.95119 0.90112 0.98414 0.92392 0.77342 0.90277 0.92662 0.90929 0.95076 0.91645 0.87878 0.75965 0.77059 0.89201 0.91862 0.91163 0.91582 0.91664 0.91826 0.91933 0.91520 0.91464 0.91196 0.91358 0.93249 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 10.75 55.43 0.60 -23.34 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.19 8.27 -34.44 -0.28 -14.47 16 8 H 0.06 1.60 7.79 -52.49 -0.41 1.20 16 9 C 0.25 6.29 0.87 -89.63 -0.08 6.21 16 10 O -0.58 -15.51 13.16 -35.23 -0.46 -15.97 16 11 C -0.15 -3.44 5.38 -24.91 -0.13 -3.57 16 12 C 0.05 1.11 5.65 -2.84 -0.02 1.09 16 13 N -0.51 -10.27 4.85 -232.70 -1.13 -11.40 16 14 C 0.04 0.52 5.03 -4.98 -0.03 0.50 16 15 C 0.51 8.10 7.42 -10.98 -0.08 8.02 16 16 O -0.44 -9.45 13.95 -18.21 -0.25 -9.71 16 17 N -0.70 -7.77 5.24 -15.78 -0.08 -7.85 16 18 C 0.69 9.05 8.47 -86.92 -0.74 8.31 16 19 O -0.53 -9.92 14.41 -18.46 -0.27 -10.19 16 20 N -0.74 -6.06 5.08 -58.69 -0.30 -6.36 16 21 C 0.16 1.31 2.45 -67.93 -0.17 1.14 16 22 C -0.13 -1.08 5.49 -26.73 -0.15 -1.22 16 23 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 24 C -0.12 -0.64 5.92 -26.73 -0.16 -0.79 16 25 C -0.12 -0.58 5.92 -26.76 -0.16 -0.74 16 26 C -0.13 -0.66 5.39 -26.76 -0.14 -0.80 16 27 C 0.06 1.27 5.86 -2.30 -0.01 1.26 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.38 10.18 7.56 45.56 0.34 10.53 16 30 H 0.08 2.00 7.54 -51.93 -0.39 1.61 16 31 H 0.05 1.29 8.03 -51.93 -0.42 0.88 16 32 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.03 0.61 7.31 -51.93 -0.38 0.23 16 34 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 35 H 0.10 1.20 8.07 -51.93 -0.42 0.79 16 36 H 0.41 2.41 8.71 -40.82 -0.36 2.06 16 37 H 0.40 1.81 8.62 -40.82 -0.35 1.46 16 38 H 0.09 0.96 7.58 -51.92 -0.39 0.57 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 49 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 50 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -35.30 394.49 -11.16 -46.46 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.79 Total: 11.24 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.40 Total: 5.74 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.91 Total: -48.95 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.98 Total: -35.87 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.30 -11.16 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.197 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds