Wall clock time and date at job start Sat Apr 11 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99593 * 2 1 4 4 H 1.48500 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46859 * 299.99887 * 3 2 1 6 6 H 1.48493 * 109.47202 * 59.99747 * 3 2 1 7 7 C 1.37869 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.87278 * 62.39560 * 9 7 2 11 11 C 1.55145 * 110.99359 * 298.54903 * 9 7 2 12 12 C 1.54313 * 103.02081 * 206.25330 * 11 9 7 13 13 N 1.47436 * 107.23514 * 22.28451 * 12 11 9 14 14 C 1.46895 * 111.00479 * 123.25643 * 13 12 11 15 15 C 1.50700 * 109.47051 * 69.87292 * 14 13 12 16 16 O 1.21234 * 120.00015 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.34771 * 119.99547 * 179.97438 * 17 15 14 19 19 O 1.21529 * 120.00653 * 0.02562 * 18 17 15 20 20 N 1.34784 * 119.99547 * 180.02562 * 18 17 15 21 21 C 1.46499 * 119.99971 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47022 * 275.00268 * 21 20 18 23 23 C 1.53005 * 109.47228 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47076 * 59.99471 * 23 22 21 25 25 C 1.52995 * 109.47524 * 300.00348 * 24 23 22 26 26 C 1.52999 * 109.47155 * 154.99817 * 21 20 18 27 27 C 1.47847 * 108.56690 * 0.98807 * 13 12 11 28 28 H 0.96997 * 120.00714 * 359.97438 * 1 2 3 29 29 H 0.96699 * 113.99613 * 297.60423 * 10 9 7 30 30 H 1.08995 * 110.70338 * 87.86763 * 11 9 7 31 31 H 1.09004 * 110.70110 * 324.63752 * 11 9 7 32 32 H 1.09002 * 109.88824 * 262.87633 * 12 11 9 33 33 H 1.09003 * 109.88883 * 141.69162 * 12 11 9 34 34 H 1.09004 * 109.47210 * 309.87514 * 14 13 12 35 35 H 1.08997 * 109.47605 * 189.87874 * 14 13 12 36 36 H 0.96995 * 120.00015 * 359.72695 * 17 15 14 37 37 H 0.96999 * 120.00044 * 0.02562 * 20 18 17 38 38 H 1.09007 * 109.46956 * 34.99803 * 21 20 18 39 39 H 1.08996 * 109.47227 * 299.99828 * 22 21 20 40 40 H 1.09001 * 109.47831 * 59.99902 * 22 21 20 41 41 H 1.09007 * 109.46829 * 299.99583 * 23 22 21 42 42 H 1.09006 * 109.47453 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47133 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.46786 * 60.00132 * 24 23 22 45 45 H 1.09007 * 109.46875 * 300.00190 * 25 24 23 46 46 H 1.08997 * 109.47382 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.47204 * 299.99930 * 26 21 20 48 48 H 1.08996 * 109.46825 * 60.00337 * 26 21 20 49 49 H 1.09004 * 110.37712 * 94.73235 * 27 13 12 50 50 H 1.08997 * 110.37682 * 217.07795 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4603 -2.6305 -1.1835 11 6 0.3743 -2.6347 1.2721 12 6 0.2542 -4.1628 1.4505 13 7 1.3924 -4.7760 0.7417 14 6 2.1867 -5.6155 1.6485 15 6 1.3962 -6.8443 2.0171 16 8 0.2814 -7.0052 1.5685 17 7 1.9284 -7.7646 2.8457 18 6 1.2211 -8.8633 3.1757 19 8 0.1037 -9.0246 2.7260 20 7 1.7532 -9.7834 4.0047 21 6 0.9847 -10.9780 4.3631 22 6 0.0667 -10.6583 5.5445 23 6 -0.7355 -11.9062 5.9193 24 6 0.2247 -13.0317 6.3093 25 6 1.1427 -13.3513 5.1278 26 6 1.9445 -12.1039 4.7529 27 6 2.2188 -3.6984 0.1571 28 1 -0.4851 0.8400 0.0004 29 1 -0.2253 -1.9548 -1.2752 30 1 -0.6067 -2.1869 1.1136 31 1 0.8704 -2.1841 2.1317 32 1 -0.6835 -4.5138 1.0197 33 1 0.2964 -4.4170 2.5096 34 1 2.4242 -5.0520 2.5508 35 1 3.1106 -5.9130 1.1524 36 1 2.8218 -7.6379 3.2014 37 1 2.6450 -9.6545 4.3639 38 1 0.3830 -11.2924 3.5102 39 1 0.6682 -10.3439 6.3974 40 1 -0.6171 -9.8562 5.2669 41 1 -1.3372 -12.2210 5.0665 42 1 -1.3893 -11.6786 6.7614 43 1 -0.3468 -13.9204 6.5767 44 1 0.8263 -12.7168 7.1620 45 1 0.5410 -13.6661 4.2751 46 1 1.8270 -14.1528 5.4059 47 1 2.5984 -12.3316 3.9111 48 1 2.5460 -11.7895 5.6057 49 1 3.0368 -3.4401 0.8296 50 1 2.6071 -4.0029 -0.8148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:07 Heat of formation + Delta-G solvation = -145.809734 kcal Electronic energy + Delta-G solvation = -29884.457153 eV Core-core repulsion = 25717.057678 eV Total energy + Delta-G solvation = -4167.399476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.27751 -40.53760 -39.68373 -38.60554 -36.37091 -35.78726 -35.02767 -34.16278 -32.02794 -31.69608 -30.32939 -29.91440 -28.27440 -26.15043 -24.27122 -23.57301 -22.60851 -21.85129 -21.46938 -21.40764 -20.95996 -19.65330 -18.96019 -18.22249 -17.36873 -17.01163 -16.88694 -16.77692 -16.46940 -16.08625 -15.73726 -15.57683 -15.38646 -15.14829 -14.98129 -14.79167 -14.27976 -14.05205 -13.87997 -13.78481 -13.49099 -13.45203 -13.13443 -13.12649 -12.89345 -12.79057 -12.56931 -12.29273 -12.20245 -12.19089 -12.10633 -12.02394 -11.72003 -11.50629 -11.38490 -11.26619 -11.16092 -11.10948 -10.70463 -10.58247 -10.10969 -10.06063 -9.17914 -8.18869 -6.35539 1.05558 1.26639 1.41528 1.45178 1.55505 2.23036 2.39794 2.79977 3.04905 3.19775 3.67597 3.71569 3.81179 3.97685 4.01722 4.08311 4.14707 4.21455 4.30320 4.35726 4.38554 4.42839 4.47556 4.54105 4.56836 4.70132 4.73147 4.88055 4.91785 4.95322 5.09601 5.11500 5.14969 5.20048 5.22456 5.26686 5.32755 5.37667 5.43984 5.46928 5.51290 5.55536 5.60259 5.80639 5.92656 6.15787 6.21845 6.63005 6.72104 7.16073 7.36231 7.37246 7.45829 8.86778 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034673 B = 0.001855 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.351831 B =15089.071380 C =15178.010052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.065 0.935 9 C 0.230 3.770 10 O -0.591 6.591 11 C -0.135 4.135 12 C 0.068 3.932 13 N -0.532 5.532 14 C 0.036 3.964 15 C 0.516 3.484 16 O -0.506 6.506 17 N -0.672 5.672 18 C 0.689 3.311 19 O -0.591 6.591 20 N -0.713 5.713 21 C 0.159 3.841 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.115 4.115 27 C 0.071 3.929 28 H 0.267 0.733 29 H 0.370 0.630 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.434 0.566 37 H 0.419 0.581 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.760 -23.860 16.943 31.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.083 0.917 9 C 0.190 3.810 10 O -0.398 6.398 11 C -0.174 4.174 12 C -0.060 4.060 13 N -0.257 5.257 14 C -0.095 4.095 15 C 0.303 3.697 16 O -0.375 6.375 17 N -0.341 5.341 18 C 0.389 3.611 19 O -0.467 6.467 20 N -0.370 5.370 21 C 0.054 3.946 22 C -0.166 4.166 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.055 4.055 28 H 0.076 0.924 29 H 0.218 0.782 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.161 0.839 36 H 0.274 0.726 37 H 0.257 0.743 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.142 -24.840 15.766 30.808 hybrid contribution 0.307 2.329 0.718 2.456 sum 9.449 -22.511 16.484 29.458 Atomic orbital electron populations 1.69868 1.07129 1.27984 1.50458 1.25772 0.95751 1.02564 0.93402 0.85438 0.79182 0.79125 0.77401 1.18815 1.21019 1.20626 1.21845 0.93795 0.91571 1.52051 0.91714 1.19885 0.87554 0.91918 0.81673 1.86153 1.51406 1.56560 1.45717 1.23109 1.00993 0.93364 0.99971 1.22546 0.94245 0.93750 0.95482 1.63168 1.08798 1.21416 1.32295 1.22337 0.97008 0.91399 0.98783 1.21408 0.86902 0.84494 0.76923 1.90833 1.20928 1.76076 1.49647 1.43906 1.21831 1.20527 1.47870 1.16457 0.84094 0.80592 0.79931 1.91049 1.20418 1.77677 1.57519 1.45180 1.21027 1.21595 1.49204 1.20977 0.93180 0.83734 0.96734 1.21901 0.98425 0.98019 0.98266 1.21510 0.98146 0.94910 1.01083 1.21558 0.97555 0.97925 0.98405 1.21505 0.98601 0.97120 0.98266 1.21762 0.97282 0.93459 1.02830 1.22905 0.94741 0.88840 0.99055 0.92394 0.78154 0.93110 0.92672 0.94023 0.93252 0.88318 0.83898 0.72594 0.74331 0.92475 0.90058 0.94938 0.93126 0.91369 0.91128 0.90672 0.92646 0.89573 0.90502 0.89071 0.90711 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.86 10.75 21.44 0.23 -49.63 16 2 C 0.03 1.34 5.29 84.65 0.45 1.79 16 3 Si 0.96 41.59 29.54 68.60 2.03 43.61 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -29.08 8.27 25.60 0.21 -28.87 16 8 H 0.06 3.28 7.79 -2.91 -0.02 3.25 16 9 C 0.23 11.50 0.87 -10.15 -0.01 11.49 16 10 O -0.59 -32.65 13.16 -148.98 -1.96 -34.61 16 11 C -0.14 -6.46 5.38 31.78 0.17 -6.29 16 12 C 0.07 2.90 5.65 86.65 0.49 3.39 16 13 N -0.53 -20.74 4.85 -890.12 -4.32 -25.05 16 14 C 0.04 0.94 5.03 85.56 0.43 1.37 16 15 C 0.52 15.66 7.42 87.66 0.65 16.31 16 16 O -0.51 -22.27 13.95 19.87 0.28 -22.00 16 17 N -0.67 -13.56 5.24 -440.53 -2.31 -15.87 16 18 C 0.69 17.58 8.47 179.05 1.52 19.09 16 19 O -0.59 -23.16 14.41 18.95 0.27 -22.88 16 20 N -0.71 -10.44 5.08 -457.87 -2.33 -12.77 16 21 C 0.16 2.45 2.45 44.99 0.11 2.56 16 22 C -0.13 -2.05 5.49 30.59 0.17 -1.88 16 23 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 24 C -0.12 -0.98 5.92 30.59 0.18 -0.79 16 25 C -0.12 -0.91 5.92 30.58 0.18 -0.72 16 26 C -0.12 -0.89 5.39 30.58 0.16 -0.73 16 27 C 0.07 2.92 5.86 86.77 0.51 3.43 16 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.37 20.90 7.56 -74.06 -0.56 20.34 16 30 H 0.05 2.67 7.54 -2.39 -0.02 2.65 16 31 H 0.05 2.58 8.03 -2.38 -0.02 2.56 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.90 7.31 -2.39 -0.02 1.88 16 34 H 0.10 2.04 7.96 -2.38 -0.02 2.02 16 35 H 0.14 2.65 8.07 -2.39 -0.02 2.63 16 36 H 0.43 3.42 8.71 -92.71 -0.81 2.61 16 37 H 0.42 2.31 8.62 -92.71 -0.80 1.51 16 38 H 0.06 1.29 7.58 -2.38 -0.02 1.27 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.07 2.64 7.70 -2.39 -0.02 2.63 16 50 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -82.11 394.49 -3.91 -86.02 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -1.20 Total: 34.44 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 5.40 Total: 18.75 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -8.72 Total: -103.32 kcal Atomic # 8 Polarization: -78.08 SS G_CDS: -1.41 Total: -79.49 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -82.11 -3.91 -86.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.791 kcal (2) G-P(sol) polarization free energy of solvation -82.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds