Wall clock time and date at job start Sat Apr 11 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99773 * 2 1 4 4 H 1.48499 * 109.46983 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46863 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.47049 * 150.00054 * 3 2 1 7 7 C 1.37874 * 120.00735 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00556 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99475 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49618 * 59.93447 * 9 7 2 11 11 C 1.53040 * 109.49874 * 179.97438 * 9 7 2 12 12 C 1.53035 * 109.53916 * 181.34661 * 11 9 7 13 13 C 1.53192 * 109.31752 * 298.63716 * 12 11 9 14 14 N 1.46925 * 108.77203 * 54.63586 * 13 12 11 15 15 C 1.34777 * 120.63190 * 126.37146 * 14 13 12 16 16 O 1.21592 * 119.99867 * 185.22088 * 15 14 13 17 17 N 1.34772 * 119.99795 * 5.22487 * 15 14 13 18 18 C 1.46505 * 119.99741 * 175.01608 * 17 15 14 19 19 C 1.52999 * 109.46949 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.47120 * 180.02562 * 19 18 17 21 21 O 1.21284 * 120.00141 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00100 * 179.72838 * 20 19 18 23 23 C 1.47150 * 120.98188 * 359.71490 * 22 20 19 24 24 C 1.53711 * 108.16282 * 129.43267 * 23 22 20 25 25 O 1.42969 * 109.14498 * 52.54038 * 24 23 22 26 26 C 1.42965 * 114.16611 * 297.29064 * 25 24 23 27 27 C 1.47150 * 120.98133 * 180.02562 * 22 20 19 28 28 C 1.46937 * 118.73763 * 306.64185 * 14 13 12 29 29 H 0.96992 * 120.00041 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.45785 * 61.32725 * 11 9 7 31 31 H 1.08994 * 109.46248 * 301.37365 * 11 9 7 32 32 H 1.09004 * 109.49573 * 178.68382 * 12 11 9 33 33 H 1.09003 * 109.49493 * 58.59044 * 12 11 9 34 34 H 1.08994 * 109.58472 * 294.84879 * 13 12 11 35 35 H 1.08997 * 109.58739 * 174.42085 * 13 12 11 36 36 H 0.97001 * 120.00522 * 355.01845 * 17 15 14 37 37 H 1.08998 * 109.46862 * 60.00473 * 18 17 15 38 38 H 1.08994 * 109.47122 * 299.99658 * 18 17 15 39 39 H 1.09006 * 109.46895 * 60.00071 * 19 18 17 40 40 H 1.09002 * 109.47386 * 300.00544 * 19 18 17 41 41 H 1.08994 * 109.68611 * 249.21517 * 23 22 20 42 42 H 1.09000 * 109.67983 * 9.76818 * 23 22 20 43 43 H 1.09002 * 109.65939 * 292.57746 * 24 23 22 44 44 H 1.08996 * 109.48701 * 172.40278 * 24 23 22 45 45 H 1.09001 * 109.50667 * 302.65694 * 26 25 24 46 46 H 1.08994 * 109.55257 * 182.52931 * 26 25 24 47 47 H 1.08996 * 109.68172 * 350.23543 * 27 22 20 48 48 H 1.09008 * 109.68226 * 110.75391 * 27 22 20 49 49 H 1.08996 * 109.58260 * 173.14631 * 28 14 13 50 50 H 1.09001 * 109.58593 * 293.57451 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6231 -2.5566 -0.8896 11 6 2.2452 -3.6628 -0.0018 12 6 1.4813 -4.9884 -0.0357 13 6 0.6064 -5.1013 1.2167 14 7 -0.2522 -3.9121 1.3024 15 6 -1.5886 -4.0373 1.4243 16 8 -2.2967 -3.0491 1.3988 17 7 -2.1401 -5.2578 1.5746 18 6 -3.5793 -5.3866 1.8164 19 6 -3.9439 -6.8667 1.9482 20 6 -5.4244 -6.9992 2.1962 21 8 -6.1196 -6.0075 2.2608 22 7 -5.9769 -8.2200 2.3404 23 6 -5.1559 -9.4381 2.2534 24 6 -5.4559 -10.3071 3.4852 25 8 -6.8686 -10.5004 3.5899 26 6 -7.6107 -9.2956 3.7937 27 6 -7.4201 -8.3744 2.5828 28 6 0.3732 -2.5837 1.2466 29 1 -0.4850 0.8400 0.0004 30 1 2.8567 -3.6190 0.8995 31 1 2.8872 -3.5910 -0.8797 32 1 2.1900 -5.8162 -0.0602 33 1 0.8507 -5.0223 -0.9242 34 1 1.2404 -5.1587 2.1014 35 1 -0.0134 -5.9954 1.1501 36 1 -1.5842 -6.0510 1.5227 37 1 -4.1283 -4.9505 0.9818 38 1 -3.8413 -4.8642 2.7364 39 1 -3.3948 -7.3032 2.7825 40 1 -3.6818 -7.3888 1.0279 41 1 -5.4063 -9.9854 1.3447 42 1 -4.0998 -9.1688 2.2411 43 1 -5.0891 -9.8097 4.3831 44 1 -4.9633 -11.2734 3.3773 45 1 -7.2515 -8.7945 4.6927 46 1 -8.6683 -9.5333 3.9072 47 1 -7.8640 -7.4005 2.7887 48 1 -7.8943 -8.8162 1.7063 49 1 -0.4005 -1.8173 1.1998 50 1 0.9879 -2.4316 2.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595460191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:23 Heat of formation + Delta-G solvation = -101.208164 kcal Electronic energy + Delta-G solvation = -29927.043281 eV Core-core repulsion = 25761.577875 eV Total energy + Delta-G solvation = -4165.465406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.77277 -39.67654 -38.73947 -36.91221 -35.21197 -34.87714 -33.35231 -32.21969 -31.74793 -30.61080 -29.63167 -28.23074 -25.31483 -24.99518 -24.45758 -23.38455 -22.12017 -21.76390 -20.19840 -19.60188 -18.75095 -17.74721 -17.50169 -16.90234 -16.44899 -16.19800 -16.13211 -15.69769 -15.61580 -15.33044 -14.98556 -14.54930 -14.22030 -14.11235 -13.77851 -13.67294 -13.38744 -13.19542 -13.06087 -12.76516 -12.57361 -12.43112 -12.20495 -11.95689 -11.91568 -11.80181 -11.51772 -11.26552 -10.95561 -10.88887 -10.71703 -10.47303 -10.39472 -10.19689 -10.16568 -9.84927 -9.40381 -9.06352 -9.05724 -8.91912 -8.73687 -8.37696 -7.61436 -5.93877 -4.03604 2.25339 2.33971 3.21163 3.26930 3.34841 3.41479 3.43530 3.88378 4.08323 4.15626 4.38261 4.43726 4.49420 4.52011 4.59395 4.62371 4.70001 4.80222 4.92166 5.05694 5.10948 5.18684 5.25512 5.28471 5.35495 5.39688 5.49738 5.61320 5.86851 5.88963 5.95786 6.05865 6.16791 6.32515 6.52313 6.60487 6.68894 6.78980 6.81666 6.86342 7.01403 7.06967 7.39146 7.53210 7.76561 7.78196 7.97063 8.10995 8.44968 8.61298 9.00243 9.29450 9.61956 11.10955 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.002029 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.040927 B =13793.636883 C =14706.430590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.577 6.577 17 N -0.760 5.760 18 C 0.156 3.844 19 C -0.151 4.151 20 C 0.523 3.477 21 O -0.525 6.525 22 N -0.622 5.622 23 C 0.071 3.929 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.048 3.952 27 C 0.076 3.924 28 C 0.128 3.872 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.388 0.612 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.076 0.924 49 H 0.124 0.876 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 -25.494 6.689 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.401 3.599 16 O -0.453 6.453 17 N -0.420 5.420 18 C 0.030 3.970 19 C -0.191 4.191 20 C 0.311 3.689 21 O -0.401 6.401 22 N -0.358 5.358 23 C -0.052 4.052 24 C -0.032 4.032 25 O -0.298 6.298 26 C -0.030 4.030 27 C -0.046 4.046 28 C 0.007 3.993 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.126 0.874 45 H 0.075 0.925 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.094 0.906 49 H 0.141 0.859 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.616 -24.204 6.721 27.271 hybrid contribution 0.945 0.525 -0.093 1.085 sum -9.670 -23.680 6.628 26.423 Atomic orbital electron populations 1.69897 1.05677 1.26828 1.49082 1.25070 0.94874 0.99236 0.94918 0.86608 0.79786 0.83629 0.78048 1.20728 1.21192 1.19949 1.21058 0.92836 0.90118 1.52037 0.92408 1.18910 0.92623 0.92201 0.94316 0.95381 1.21610 0.98539 0.94082 1.00497 1.21951 0.98604 0.99145 0.97508 1.21477 0.93321 0.87491 0.98495 1.47790 1.03478 1.08850 1.75879 1.15916 0.82604 0.83050 0.78321 1.90957 1.60335 1.36562 1.57490 1.45284 1.08657 1.07499 1.80597 1.20723 0.80566 0.92636 1.03044 1.21851 0.92955 0.99859 1.04452 1.20508 0.90213 0.82294 0.75896 1.90771 1.63582 1.36318 1.49381 1.48155 1.08708 1.05946 1.72989 1.22571 0.96610 0.86188 0.99832 1.23078 0.82492 1.00830 0.96757 1.87979 1.17942 1.30534 1.93375 1.23018 0.97554 0.85793 0.96594 1.22303 0.81342 1.02158 0.98840 1.22101 0.98400 0.80598 0.98153 0.92625 0.93214 0.93087 0.92371 0.92204 0.92191 0.92274 0.77596 0.90900 0.91114 0.88248 0.88119 0.90122 0.88401 0.92369 0.87430 0.92458 0.87463 0.87838 0.90566 0.85859 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 11.39 55.43 0.63 -25.57 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.28 8.57 -34.44 -0.29 -14.57 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.97 2.23 -91.87 -0.21 0.76 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 12 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 13 C 0.12 1.74 6.39 -3.71 -0.02 1.72 16 14 N -0.62 -12.64 2.98 -178.76 -0.53 -13.17 16 15 C 0.70 14.61 8.30 -86.92 -0.72 13.89 16 16 O -0.58 -15.16 15.77 5.28 0.08 -15.07 16 17 N -0.76 -11.20 5.46 -65.22 -0.36 -11.55 16 18 C 0.16 2.15 4.97 -4.04 -0.02 2.13 16 19 C -0.15 -1.28 4.18 -27.89 -0.12 -1.40 16 20 C 0.52 5.56 7.71 -10.99 -0.08 5.48 16 21 O -0.53 -7.94 15.45 5.55 0.09 -7.85 16 22 N -0.62 -4.91 3.01 -172.00 -0.52 -5.43 16 23 C 0.07 0.33 6.57 -3.32 -0.02 0.31 16 24 C 0.05 0.21 7.00 37.53 0.26 0.48 16 25 O -0.38 -2.69 10.74 -35.23 -0.38 -3.07 16 26 C 0.05 0.29 6.99 37.33 0.26 0.55 16 27 C 0.08 0.56 6.64 -3.52 -0.02 0.53 16 28 C 0.13 3.16 5.39 -3.93 -0.02 3.14 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.66 5.65 -51.93 -0.29 0.37 16 36 H 0.39 4.25 5.96 -40.82 -0.24 4.01 16 37 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.10 0.59 7.68 -51.93 -0.40 0.19 16 40 H 0.10 0.64 7.99 -51.93 -0.42 0.22 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.27 6.05 -51.93 -0.31 -0.05 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.89 7.08 -51.93 -0.37 0.52 16 48 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.12 3.60 5.11 -51.93 -0.27 3.34 16 50 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -37.02 390.71 -9.70 -46.72 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.18 Total: 2.48 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -1.40 Total: 10.12 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.78 Total: -55.73 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.21 Total: -25.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.02 -9.70 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595460191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.493 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds