Wall clock time and date at job start Sat Apr 11 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00207 * 2 1 4 4 H 1.48493 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47076 * 300.00410 * 3 2 1 6 6 H 1.48502 * 109.47038 * 60.00088 * 3 2 1 7 7 C 1.37884 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99631 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52189 * 299.91421 * 9 7 2 11 11 C 1.53042 * 109.49173 * 179.83624 * 9 7 2 12 12 C 1.53078 * 109.65463 * 178.74692 * 11 9 7 13 13 C 1.53189 * 109.29453 * 61.15799 * 12 11 9 14 14 N 1.46932 * 108.89180 * 305.57472 * 13 12 11 15 15 C 1.34781 * 120.62890 * 233.56317 * 14 13 12 16 16 O 1.21588 * 119.99468 * 174.76633 * 15 14 13 17 17 N 1.34772 * 120.00290 * 354.77433 * 15 14 13 18 18 C 1.46502 * 119.99901 * 184.98536 * 17 15 14 19 19 C 1.53003 * 109.46799 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.46723 * 179.97438 * 19 18 17 21 21 O 1.21279 * 120.00301 * 359.97438 * 20 19 18 22 22 N 1.34784 * 120.00095 * 179.97438 * 20 19 18 23 23 C 1.47158 * 120.97780 * 359.71714 * 22 20 19 24 24 C 1.53715 * 108.16025 * 129.43359 * 23 22 20 25 25 O 1.42965 * 109.14816 * 52.53299 * 24 23 22 26 26 C 1.42965 * 114.16864 * 297.29175 * 25 24 23 27 27 C 1.47147 * 120.98487 * 180.02562 * 22 20 19 28 28 C 1.46917 * 118.73707 * 53.53814 * 14 13 12 29 29 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46233 * 298.69967 * 11 9 7 31 31 H 1.08995 * 109.46279 * 58.67923 * 11 9 7 32 32 H 1.08997 * 109.39233 * 301.27605 * 12 11 9 33 33 H 1.09001 * 109.62401 * 181.16924 * 12 11 9 34 34 H 1.09007 * 109.58777 * 185.72120 * 13 12 11 35 35 H 1.08997 * 109.59363 * 65.43368 * 13 12 11 36 36 H 0.97003 * 119.99816 * 4.97726 * 17 15 14 37 37 H 1.08996 * 109.46964 * 299.99113 * 18 17 15 38 38 H 1.08999 * 109.47255 * 59.99240 * 18 17 15 39 39 H 1.09006 * 109.46835 * 299.99367 * 19 18 17 40 40 H 1.08999 * 109.47637 * 59.99719 * 19 18 17 41 41 H 1.09001 * 109.67774 * 249.21213 * 23 22 20 42 42 H 1.08997 * 109.68099 * 9.76779 * 23 22 20 43 43 H 1.09010 * 109.65538 * 292.57159 * 24 23 22 44 44 H 1.08998 * 109.48339 * 172.40150 * 24 23 22 45 45 H 1.08997 * 109.51066 * 302.65657 * 26 25 24 46 46 H 1.09000 * 109.55176 * 182.52972 * 26 25 24 47 47 H 1.08999 * 109.67992 * 350.23317 * 27 22 20 48 48 H 1.08992 * 109.68471 * 110.75232 * 27 22 20 49 49 H 1.08998 * 109.59125 * 66.18189 * 28 14 13 50 50 H 1.09005 * 109.58783 * 186.60909 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5582 0.8908 11 6 2.2450 -3.6628 -0.0029 12 6 1.4837 -4.9904 0.0286 13 6 0.6033 -5.0988 -1.2204 14 7 -0.2555 -3.9094 -1.3017 15 6 -1.5923 -4.0344 -1.4207 16 8 -2.3002 -3.0463 -1.3913 17 7 -2.1442 -5.2546 -1.5720 18 6 -3.5840 -5.3828 -1.8106 19 6 -3.9487 -6.8626 -1.9456 20 6 -5.4298 -6.9945 -2.1904 21 8 -6.1252 -6.0027 -2.2504 22 7 -5.9817 -8.2147 -2.3426 23 6 -5.1572 -9.4320 -2.2799 24 6 -5.8176 -10.4075 -1.2925 25 8 -7.1882 -10.5876 -1.6569 26 6 -7.9743 -9.3955 -1.5856 27 6 -7.4252 -8.3686 -2.5831 28 6 0.3705 -2.5813 -1.2504 29 1 -0.4849 0.8400 0.0004 30 1 2.8543 -3.6173 -0.9056 31 1 2.8889 -3.5930 0.8737 32 1 0.8571 -5.0273 0.9197 33 1 2.1923 -5.8185 0.0470 34 1 -0.0165 -5.9931 -1.1541 35 1 1.2334 -5.1559 -2.1079 36 1 -1.5881 -6.0479 -1.5230 37 1 -4.1310 -4.9484 -0.9739 38 1 -3.8482 -4.8585 -2.7289 39 1 -3.4016 -7.2967 -2.7826 40 1 -3.6844 -7.3873 -1.0275 41 1 -5.1003 -9.8881 -3.2683 42 1 -4.1552 -9.1793 -1.9334 43 1 -5.7598 -10.0019 -0.2823 44 1 -5.3019 -11.3671 -1.3295 45 1 -7.9243 -8.9863 -0.5767 46 1 -9.0102 -9.6263 -1.8340 47 1 -7.9256 -7.4113 -2.4374 48 1 -7.5924 -8.7190 -3.6015 49 1 0.9835 -2.4316 -2.1391 50 1 -0.4027 -1.8143 -1.2039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595460192.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:27 Heat of formation + Delta-G solvation = -101.262677 kcal Electronic energy + Delta-G solvation = -29935.781082 eV Core-core repulsion = 25770.313312 eV Total energy + Delta-G solvation = -4165.467770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77119 -39.67230 -38.73629 -36.89879 -35.21021 -34.87738 -33.34617 -32.21702 -31.74811 -30.60992 -29.62059 -28.22767 -25.31400 -24.99476 -24.45360 -23.37864 -22.11779 -21.76818 -20.19540 -19.60149 -18.75269 -17.74655 -17.50203 -16.89994 -16.43044 -16.18881 -16.15639 -15.68811 -15.61394 -15.36079 -14.92427 -14.58384 -14.22204 -14.11192 -13.76441 -13.66643 -13.42264 -13.14288 -13.06912 -12.78854 -12.57453 -12.42488 -12.19192 -11.96149 -11.90610 -11.81414 -11.51379 -11.26105 -10.97368 -10.87804 -10.71182 -10.47094 -10.37857 -10.20165 -10.16547 -9.84919 -9.40244 -9.07080 -9.05655 -8.90752 -8.73675 -8.38571 -7.61100 -5.94110 -4.03654 2.25302 2.34099 3.21351 3.27350 3.34044 3.41613 3.44368 3.88390 4.08399 4.15991 4.38453 4.43797 4.49776 4.52214 4.59398 4.62779 4.70343 4.80238 4.92386 5.06302 5.11124 5.18723 5.25621 5.28559 5.35321 5.39739 5.49825 5.61357 5.87132 5.88770 5.95884 6.05764 6.16483 6.32468 6.52889 6.60024 6.68786 6.79008 6.81651 6.86327 7.01227 7.07192 7.38476 7.53096 7.76571 7.78341 7.96831 8.10660 8.44868 8.61312 9.00347 9.29459 9.61892 11.10728 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.002041 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.197354 B =13713.503340 C =14594.082018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.117 3.883 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.577 6.577 17 N -0.760 5.760 18 C 0.156 3.844 19 C -0.151 4.151 20 C 0.523 3.477 21 O -0.525 6.525 22 N -0.622 5.622 23 C 0.071 3.929 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.048 3.952 27 C 0.076 3.924 28 C 0.128 3.872 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.388 0.612 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.076 0.924 49 H 0.039 0.961 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 -25.589 -4.657 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.401 3.599 16 O -0.453 6.453 17 N -0.420 5.420 18 C 0.030 3.970 19 C -0.191 4.191 20 C 0.311 3.689 21 O -0.400 6.400 22 N -0.358 5.358 23 C -0.052 4.052 24 C -0.032 4.032 25 O -0.298 6.298 26 C -0.030 4.030 27 C -0.046 4.046 28 C 0.007 3.993 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.094 0.906 49 H 0.057 0.943 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.933 -24.298 -4.746 27.064 hybrid contribution 0.930 0.528 0.081 1.072 sum -10.003 -23.770 -4.665 26.208 Atomic orbital electron populations 1.69910 1.05678 1.26706 1.49165 1.25074 0.94873 0.99247 0.94926 0.86553 0.80001 0.83927 0.77616 1.19833 1.20993 1.21048 1.21103 0.92876 0.90122 1.51911 0.92357 1.18984 0.92594 0.92180 0.94249 0.95353 1.21617 0.98559 0.94052 1.00490 1.21955 0.98588 0.99139 0.97519 1.21471 0.93313 0.87477 0.98516 1.47785 1.03430 1.08854 1.75928 1.15918 0.82611 0.83049 0.78316 1.90956 1.60358 1.36561 1.57463 1.45285 1.08599 1.07519 1.80637 1.20723 0.80541 0.92645 1.03058 1.21852 0.92970 0.99847 1.04447 1.20508 0.90229 0.82305 0.75868 1.90769 1.63534 1.36271 1.49474 1.48159 1.08585 1.06035 1.73030 1.22573 0.95535 0.85748 1.01332 1.23081 0.82837 1.00179 0.97081 1.87977 1.20422 1.32257 1.89177 1.23020 0.95712 0.85493 0.98751 1.22300 0.81005 1.01570 0.99756 1.22189 0.98358 0.80603 0.98115 0.92689 0.93230 0.93093 0.92227 0.92345 0.92297 0.92219 0.77596 0.90921 0.91098 0.88160 0.88206 0.90147 0.88402 0.92335 0.87426 0.92426 0.87463 0.87838 0.90587 0.94260 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 11.39 55.43 0.63 -25.54 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.26 8.56 -34.44 -0.29 -14.56 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.04 0.98 2.26 -91.65 -0.21 0.77 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.16 5.10 -26.67 -0.14 -2.30 16 12 C -0.13 -2.09 6.09 -26.59 -0.16 -2.25 16 13 C 0.12 1.74 6.38 -3.71 -0.02 1.72 16 14 N -0.62 -12.64 2.97 -178.50 -0.53 -13.17 16 15 C 0.70 14.62 8.29 -86.92 -0.72 13.90 16 16 O -0.58 -15.15 15.77 5.29 0.08 -15.07 16 17 N -0.76 -11.20 5.46 -65.22 -0.36 -11.56 16 18 C 0.16 2.15 4.97 -4.04 -0.02 2.13 16 19 C -0.15 -1.28 4.19 -27.88 -0.12 -1.40 16 20 C 0.52 5.56 7.71 -10.98 -0.08 5.48 16 21 O -0.53 -7.94 15.45 5.56 0.09 -7.85 16 22 N -0.62 -4.92 3.01 -172.00 -0.52 -5.43 16 23 C 0.07 0.33 6.57 -3.31 -0.02 0.31 16 24 C 0.05 0.22 7.00 37.53 0.26 0.48 16 25 O -0.38 -2.71 10.74 -35.23 -0.38 -3.09 16 26 C 0.05 0.29 6.99 37.33 0.26 0.55 16 27 C 0.08 0.56 6.64 -3.51 -0.02 0.54 16 28 C 0.13 3.16 5.41 -3.72 -0.02 3.14 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.66 5.65 -51.92 -0.29 0.37 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.39 4.25 5.96 -40.82 -0.24 4.01 16 37 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.10 0.61 8.00 -51.93 -0.42 0.20 16 40 H 0.10 0.62 7.67 -51.93 -0.40 0.22 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.27 6.05 -51.93 -0.31 -0.04 16 43 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 44 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.89 7.08 -51.93 -0.37 0.53 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.12 3.60 5.11 -51.93 -0.27 3.33 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -37.02 390.74 -9.69 -46.71 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.18 Total: 2.46 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -1.40 Total: 10.15 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.77 Total: -55.71 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.21 Total: -26.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.02 -9.69 -46.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595460192.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.553 kcal (2) G-P(sol) polarization free energy of solvation -37.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds