Wall clock time and date at job start Sat Apr 11 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99860 * 2 1 4 4 H 1.48497 * 109.47282 * 90.00587 * 3 2 1 5 5 H 1.48505 * 109.47121 * 210.00043 * 3 2 1 6 6 H 1.48497 * 109.47354 * 329.99944 * 3 2 1 7 7 C 1.37875 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00248 * 205.95500 * 7 2 1 9 9 C 1.50704 * 119.99916 * 25.95093 * 7 2 1 10 10 N 1.46498 * 109.47257 * 95.47336 * 9 7 2 11 11 C 1.46501 * 119.99940 * 265.72841 * 10 9 7 12 12 C 1.53005 * 109.47117 * 89.12984 * 11 10 9 13 13 N 1.46904 * 109.47042 * 185.20954 * 12 11 10 14 14 C 1.47013 * 110.99921 * 293.63221 * 13 12 11 15 15 C 1.53102 * 109.25588 * 177.60986 * 14 13 12 16 16 O 1.43015 * 109.25777 * 56.84929 * 15 14 13 17 17 C 1.43017 * 113.73900 * 301.32691 * 16 15 14 18 18 C 1.47012 * 110.99588 * 169.99706 * 13 12 11 19 19 C 1.34776 * 120.00354 * 85.72714 * 10 9 7 20 20 O 1.21279 * 120.00281 * 184.81352 * 19 10 9 21 21 C 1.50708 * 119.99578 * 4.81398 * 19 10 9 22 22 H 1.09004 * 109.39580 * 319.81529 * 21 19 10 23 23 C 1.53062 * 109.39834 * 199.98576 * 21 19 10 24 24 C 1.53352 * 108.42516 * 190.97247 * 23 21 19 25 25 C 1.52913 * 108.67254 * 67.52716 * 24 23 21 26 26 N 1.45755 * 110.49345 * 309.24650 * 25 24 23 27 27 C 1.33235 * 124.06509 * 19.15793 * 26 25 24 28 28 O 1.21284 * 118.15831 * 177.70545 * 27 26 25 29 29 H 0.96993 * 119.99701 * 185.69711 * 1 2 3 30 30 H 1.09000 * 109.47154 * 215.47402 * 9 7 2 31 31 H 1.09006 * 109.47027 * 335.47459 * 9 7 2 32 32 H 1.08998 * 109.47163 * 209.12380 * 11 10 9 33 33 H 1.09002 * 109.47244 * 329.13300 * 11 10 9 34 34 H 1.09000 * 109.46842 * 305.20493 * 12 11 10 35 35 H 1.08998 * 109.46847 * 65.20784 * 12 11 10 36 36 H 1.08994 * 109.50831 * 297.54253 * 14 13 12 37 37 H 1.08998 * 109.50242 * 57.67785 * 14 13 12 38 38 H 1.08999 * 109.50437 * 296.91593 * 15 14 13 39 39 H 1.08996 * 109.50250 * 176.78633 * 15 14 13 40 40 H 1.08997 * 109.50713 * 298.74005 * 17 16 15 41 41 H 1.08998 * 109.53995 * 178.63027 * 17 16 15 42 42 H 1.08998 * 109.51438 * 302.32803 * 18 13 12 43 43 H 1.09004 * 109.50846 * 62.46041 * 18 13 12 44 44 H 1.08999 * 109.67907 * 310.70204 * 23 21 19 45 45 H 1.09001 * 109.67648 * 71.20581 * 23 21 19 46 46 H 1.09002 * 109.60441 * 187.28903 * 24 23 21 47 47 H 1.09004 * 109.59601 * 307.60701 * 24 23 21 48 48 H 1.08998 * 109.30441 * 69.56647 * 25 24 23 49 49 H 1.09006 * 109.29863 * 189.14400 * 25 24 23 50 50 H 0.97000 * 117.95263 * 199.07630 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5468 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0029 -1.2414 0.4088 9 6 1.3651 -2.4331 -0.5722 10 7 1.7872 -2.6024 -1.9648 11 6 0.9561 -2.0776 -3.0511 12 6 1.3622 -0.6334 -3.3519 13 7 0.4489 -0.0663 -4.3530 14 6 0.6021 -0.7429 -5.6492 15 6 -0.4070 -0.1630 -6.6439 16 8 -0.2116 1.2502 -6.7443 17 6 -0.3541 1.9410 -5.5002 18 6 0.6555 1.3824 -4.4939 19 6 2.9401 -3.2410 -2.2467 20 8 3.3336 -3.3051 -3.3921 21 6 3.7404 -3.8755 -1.1384 22 1 3.7319 -3.2220 -0.2659 23 6 5.1833 -4.0803 -1.6063 24 6 5.9035 -4.9665 -0.5828 25 6 5.2946 -6.3682 -0.6344 26 7 3.8423 -6.2978 -0.5327 27 6 3.1296 -5.1988 -0.7765 28 8 1.9213 -5.2716 -0.7001 29 1 -0.4849 -0.8359 0.0834 30 1 1.6731 -3.3022 0.0091 31 1 0.2803 -2.3342 -0.5309 32 1 1.0965 -2.6878 -3.9433 33 1 -0.0919 -2.1056 -2.7529 34 1 1.3101 -0.0433 -2.4370 35 1 2.3813 -0.6156 -3.7383 36 1 1.6135 -0.5866 -6.0240 37 1 0.4196 -1.8105 -5.5262 38 1 -1.4196 -0.3665 -6.2954 39 1 -0.2588 -0.6214 -7.6216 40 1 -1.3651 1.7986 -5.1186 41 1 -0.1681 3.0044 -5.6503 42 1 0.5122 1.8662 -3.5278 43 1 1.6679 1.5727 -4.8503 44 1 5.1873 -4.5680 -2.5811 45 1 5.6868 -3.1161 -1.6763 46 1 6.9645 -5.0194 -0.8271 47 1 5.7787 -4.5474 0.4157 48 1 5.5671 -6.8450 -1.5760 49 1 5.6825 -6.9603 0.1946 50 1 3.3652 -7.1012 -0.2725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:35 Heat of formation + Delta-G solvation = -108.591347 kcal Electronic energy + Delta-G solvation = -32031.730812 eV Core-core repulsion = 27865.945247 eV Total energy + Delta-G solvation = -4165.785565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.60224 -39.31872 -38.38236 -36.43092 -35.85592 -34.74249 -32.89726 -32.59611 -30.99786 -30.15715 -29.12046 -26.89728 -25.87862 -24.49443 -23.77316 -22.90694 -22.61681 -21.71051 -20.08704 -19.50291 -18.31821 -17.46791 -16.98873 -16.60970 -16.16982 -16.00856 -15.80117 -15.37951 -14.84227 -14.79879 -14.71897 -14.35972 -14.06651 -13.97674 -13.88195 -13.66798 -13.48861 -13.09937 -12.90786 -12.67798 -12.51278 -12.04975 -11.93833 -11.76317 -11.58935 -11.27222 -11.24755 -11.17973 -11.09615 -10.97257 -10.78848 -10.38359 -10.30326 -10.09064 -9.99646 -9.58573 -9.42037 -9.35388 -9.08425 -8.95395 -8.45401 -8.00782 -7.41026 -6.63262 -4.29521 2.78398 3.12674 3.26536 3.32995 3.48338 3.58026 3.86838 4.01609 4.34076 4.34909 4.68043 4.75856 4.79777 4.89652 5.06395 5.10329 5.25978 5.28255 5.30820 5.37135 5.43034 5.49441 5.56818 5.61968 5.72231 5.76471 5.80429 5.81530 5.90375 5.96127 6.04536 6.09619 6.10719 6.19374 6.27137 6.34342 6.48174 6.62489 6.82953 6.84775 7.15766 7.24381 7.33837 7.36525 7.42676 7.63169 7.96008 8.20036 8.36850 8.52807 8.63746 9.03444 9.38285 10.68747 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.004188 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.144402 B = 6683.676839 C = 8060.987457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.052 3.948 3 Si 1.033 2.967 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.633 4.633 8 H 0.051 0.949 9 C 0.206 3.794 10 N -0.571 5.571 11 C 0.133 3.867 12 C 0.043 3.957 13 N -0.531 5.531 14 C 0.015 3.985 15 C 0.066 3.934 16 O -0.391 6.391 17 C 0.066 3.934 18 C 0.019 3.981 19 C 0.531 3.469 20 O -0.579 6.579 21 C -0.123 4.123 22 H 0.135 0.865 23 C -0.107 4.107 24 C -0.137 4.137 25 C 0.111 3.889 26 N -0.723 5.723 27 C 0.533 3.467 28 O -0.534 6.534 29 H 0.276 0.724 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.029 0.971 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -5.935 -4.382 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.159 4.159 3 Si 0.861 3.139 4 H -0.211 1.211 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.671 4.671 8 H 0.070 0.930 9 C 0.089 3.911 10 N -0.300 5.300 11 C 0.009 3.991 12 C -0.085 4.085 13 N -0.256 5.256 14 C -0.114 4.114 15 C -0.011 4.011 16 O -0.310 6.310 17 C -0.011 4.011 18 C -0.110 4.110 19 C 0.317 3.683 20 O -0.461 6.461 21 C -0.147 4.147 22 H 0.152 0.848 23 C -0.145 4.145 24 C -0.175 4.175 25 C -0.013 4.013 26 N -0.376 5.376 27 C 0.319 3.681 28 O -0.411 6.411 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.957 -4.136 -5.038 8.830 hybrid contribution 1.058 -1.849 0.411 2.169 sum 7.014 -5.985 -4.627 10.316 Atomic orbital electron populations 1.70809 1.07353 1.31349 1.40403 1.25663 0.95863 1.02178 0.92193 0.84148 0.76007 0.76386 0.77390 1.21136 1.21043 1.20357 1.22084 1.04102 0.96005 1.44931 0.93042 1.19705 0.96866 0.96842 0.77719 1.49198 1.19905 1.51426 1.09491 1.21114 0.94810 0.92848 0.90324 1.22627 0.92661 0.97310 0.95924 1.62165 1.53815 1.02729 1.06915 1.22819 0.98439 0.99870 0.90259 1.22649 0.98385 0.81130 0.98970 1.87922 1.92474 1.19463 1.31104 1.22656 0.98741 0.96007 0.83688 1.22753 0.98071 0.89417 1.00745 1.19574 0.81766 0.78840 0.88117 1.90571 1.70234 1.63423 1.21854 1.21401 0.96262 0.95189 1.01879 0.84752 1.21523 0.92444 1.01191 0.99336 1.21908 1.00394 0.94461 1.00755 1.21377 0.79936 0.98195 1.01788 1.45386 1.07957 1.13176 1.71094 1.19655 0.87071 0.85303 0.76090 1.90785 1.14201 1.84820 1.51264 0.91175 0.93269 0.93626 0.92124 0.90757 0.87840 0.95227 0.94249 0.89627 0.92371 0.88918 0.92182 0.88764 0.89208 0.94416 0.90022 0.90320 0.89627 0.90741 0.91755 0.90737 0.76679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.40 13.56 55.43 0.75 -22.65 16 2 C 0.05 1.35 3.64 -17.82 -0.06 1.28 16 3 Si 1.03 23.24 29.41 -169.99 -5.00 18.24 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.63 -16.14 8.64 -34.44 -0.30 -16.44 16 8 H 0.05 1.31 7.47 -52.49 -0.39 0.92 16 9 C 0.21 5.00 5.04 -5.19 -0.03 4.97 16 10 N -0.57 -13.10 2.38 -175.05 -0.42 -13.52 16 11 C 0.13 2.90 5.23 -4.04 -0.02 2.88 16 12 C 0.04 0.92 5.28 -3.82 -0.02 0.90 16 13 N -0.53 -9.90 4.73 -234.30 -1.11 -11.01 16 14 C 0.01 0.24 5.44 -3.71 -0.02 0.22 16 15 C 0.07 0.92 7.01 37.21 0.26 1.18 16 16 O -0.39 -6.05 10.83 -35.23 -0.38 -6.43 16 17 C 0.07 0.96 7.01 37.21 0.26 1.22 16 18 C 0.02 0.32 5.64 -3.71 -0.02 0.30 16 19 C 0.53 11.71 6.43 -10.98 -0.07 11.64 16 20 O -0.58 -13.57 15.41 5.56 0.09 -13.49 16 21 C -0.12 -2.25 1.98 -93.14 -0.18 -2.43 16 22 H 0.13 2.57 6.24 -51.93 -0.32 2.25 16 23 C -0.11 -1.53 5.00 -26.52 -0.13 -1.66 16 24 C -0.14 -1.38 6.02 -26.59 -0.16 -1.54 16 25 C 0.11 1.02 7.17 -4.49 -0.03 0.99 16 26 N -0.72 -9.23 5.44 -61.42 -0.33 -9.57 16 27 C 0.53 9.39 7.05 -11.92 -0.08 9.31 16 28 O -0.53 -11.41 14.91 5.55 0.08 -11.32 16 29 H 0.28 7.54 6.87 -40.82 -0.28 7.26 16 30 H 0.05 1.19 4.73 -51.93 -0.25 0.94 16 31 H 0.05 1.17 5.89 -51.93 -0.31 0.87 16 32 H 0.06 1.30 6.09 -51.93 -0.32 0.98 16 33 H 0.07 1.65 7.88 -51.93 -0.41 1.24 16 34 H 0.10 2.48 5.32 -51.93 -0.28 2.20 16 35 H 0.03 0.67 8.12 -51.93 -0.42 0.24 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.38 6.50 -51.93 -0.34 1.04 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.24 7.48 -51.93 -0.39 0.86 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.40 4.44 8.80 -40.82 -0.36 4.08 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -31.39 383.56 -9.07 -40.46 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.92 Total: 10.69 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -0.61 Total: 12.82 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -1.11 Total: -56.74 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.21 Total: -31.24 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.00 Total: 18.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.39 -9.07 -40.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.132 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds