Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00201 * 2 1 4 4 H 1.48493 * 109.46958 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46781 * 120.00239 * 3 2 1 6 6 H 1.48495 * 109.47041 * 240.00142 * 3 2 1 7 7 C 1.37882 * 119.99953 * 179.72703 * 2 1 3 8 8 H 1.07994 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99750 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99918 * 294.30753 * 10 9 7 12 12 C 1.53237 * 109.33855 * 172.74406 * 11 10 9 13 13 N 1.47080 * 108.52126 * 53.82901 * 12 11 10 14 14 C 1.34774 * 120.88166 * 128.79273 * 13 12 11 15 15 O 1.21346 * 120.00308 * 174.94959 * 14 13 12 16 16 C 1.49455 * 120.00088 * 354.95128 * 14 13 12 17 17 O 1.21347 * 120.00006 * 275.73116 * 16 14 13 18 18 N 1.34782 * 120.00102 * 95.73270 * 16 14 13 19 19 C 1.46499 * 119.99599 * 5.03441 * 18 16 14 20 20 C 1.53001 * 109.46915 * 85.51117 * 19 18 16 21 21 O 1.42896 * 109.47397 * 64.99351 * 20 19 18 22 22 C 1.46498 * 119.99798 * 185.03559 * 18 16 14 23 23 C 1.53788 * 113.61283 * 43.29576 * 22 18 16 24 24 C 1.53955 * 87.01339 * 220.04457 * 23 22 18 25 25 C 1.53774 * 87.11598 * 25.36538 * 24 23 22 26 26 C 1.47074 * 118.23730 * 308.81281 * 13 12 11 27 27 C 1.46894 * 111.00139 * 170.00215 * 10 9 7 28 28 H 0.96994 * 120.00111 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47250 * 300.00288 * 9 7 2 30 30 H 1.09008 * 109.46768 * 60.00209 * 9 7 2 31 31 H 1.09003 * 109.49187 * 292.70056 * 11 10 9 32 32 H 1.08995 * 109.49405 * 52.78582 * 11 10 9 33 33 H 1.09000 * 109.63050 * 294.11387 * 12 11 10 34 34 H 1.09007 * 109.62649 * 173.53701 * 12 11 10 35 35 H 1.09002 * 109.46704 * 205.50212 * 19 18 16 36 36 H 1.08997 * 109.47543 * 325.50633 * 19 18 16 37 37 H 1.09003 * 109.46967 * 184.99446 * 20 19 18 38 38 H 1.09001 * 109.47014 * 304.99405 * 20 19 18 39 39 H 0.96699 * 114.00164 * 179.97438 * 21 20 19 40 40 H 1.08995 * 112.84727 * 174.48591 * 22 18 16 41 41 H 1.08994 * 113.61368 * 334.56465 * 23 22 18 42 42 H 1.08997 * 113.61547 * 105.46816 * 23 22 18 43 43 H 1.09000 * 113.54000 * 270.80579 * 24 23 22 44 44 H 1.09005 * 113.66590 * 139.93551 * 24 23 22 45 45 H 1.09002 * 113.61637 * 220.09026 * 25 24 23 46 46 H 1.08996 * 113.69508 * 89.19683 * 25 24 23 47 47 H 1.09005 * 109.62955 * 291.47483 * 26 13 12 48 48 H 1.09003 * 109.79228 * 170.99369 * 26 13 12 49 49 H 1.09004 * 109.49374 * 307.21278 * 27 10 9 50 50 H 1.09001 * 109.49542 * 67.29888 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0057 8 1 3.0845 -1.1941 0.0053 9 6 1.2510 -2.4991 0.0125 10 7 2.2055 -3.6157 0.0183 11 6 2.9767 -3.6556 -1.2314 12 6 4.0788 -4.7137 -1.1140 13 7 3.4613 -5.9901 -0.7233 14 6 3.7113 -7.1198 -1.4145 15 8 3.2677 -8.1800 -1.0253 16 6 4.5350 -7.0666 -2.6605 17 8 4.0146 -6.7867 -3.7204 18 7 5.8558 -7.3296 -2.6069 19 6 6.4636 -7.7747 -1.3505 20 6 6.3166 -9.2922 -1.2223 21 8 7.0695 -9.9326 -2.2543 22 6 6.6835 -7.1704 -3.8052 23 6 6.3788 -5.8886 -4.5985 24 6 6.5470 -6.7343 -5.8739 25 6 6.1644 -7.9555 -5.0213 26 6 2.5635 -6.0010 0.4416 27 6 1.5209 -4.8922 0.2630 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6246 -2.5524 0.9029 30 1 0.6240 -2.5612 -0.8771 31 1 2.3148 -3.9101 -2.0593 32 1 3.4272 -2.6797 -1.4121 33 1 4.8001 -4.4086 -0.3559 34 1 4.5800 -4.8285 -2.0752 35 1 7.5211 -7.5104 -1.3449 36 1 5.9632 -7.2891 -0.5127 37 1 6.6887 -9.6123 -0.2491 38 1 5.2655 -9.5647 -1.3170 39 1 7.0225 -10.8982 -2.2340 40 1 7.7451 -7.3206 -3.6092 41 1 5.3652 -5.5154 -4.4525 42 1 7.1368 -5.1138 -4.4841 43 1 7.5716 -6.7641 -6.2445 44 1 5.8209 -6.5007 -6.6527 45 1 6.7495 -8.8468 -5.2478 46 1 5.0923 -8.1496 -4.9905 47 1 3.1391 -5.8197 1.3493 48 1 2.0627 -6.9666 0.5126 49 1 0.9157 -4.8131 1.1662 50 1 0.8794 -5.1295 -0.5856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601474367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -73.519839 kcal Electronic energy + Delta-G solvation = -31586.310126 eV Core-core repulsion = 27422.045375 eV Total energy + Delta-G solvation = -4164.264751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38416 -39.65944 -37.89108 -37.46944 -37.15054 -34.90520 -34.73096 -32.65243 -31.07225 -29.45860 -28.44848 -26.56992 -25.72297 -25.14225 -23.88725 -23.49610 -22.95564 -21.83786 -20.57083 -19.91222 -18.57012 -17.95540 -17.72097 -16.88320 -16.80667 -16.72120 -15.87592 -15.49886 -15.17601 -14.85872 -14.76501 -14.57323 -14.24711 -14.11455 -13.98990 -13.73472 -13.69675 -13.27009 -13.08377 -13.00564 -12.62038 -12.48161 -12.04525 -11.93425 -11.89742 -11.66518 -11.46097 -11.40954 -11.11661 -11.03714 -10.79955 -10.65982 -10.65245 -10.52335 -10.45741 -10.31460 -10.11325 -9.40772 -8.96544 -8.94238 -8.63506 -8.44373 -7.51549 -6.43130 -4.13296 1.95199 2.03203 2.45640 3.14836 3.40720 3.42658 3.61313 3.84421 3.95503 4.43903 4.48796 4.50656 4.60607 4.64962 4.73384 4.79805 4.87831 4.96850 5.03812 5.17363 5.19280 5.24106 5.30577 5.33610 5.44031 5.47208 5.52939 5.59246 5.63845 5.75868 5.78544 5.80637 5.93601 5.95836 6.04844 6.08532 6.25079 6.29428 6.41362 6.52127 6.87855 6.92471 6.96891 7.11034 7.26572 7.63132 7.65115 7.72612 7.80104 8.20087 8.47865 8.78916 9.57791 10.95961 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003016 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.798858 B = 9281.219750 C =10307.570795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.592 4.592 8 H 0.058 0.942 9 C 0.184 3.816 10 N -0.528 5.528 11 C 0.051 3.949 12 C 0.109 3.891 13 N -0.588 5.588 14 C 0.511 3.489 15 O -0.525 6.525 16 C 0.519 3.481 17 O -0.501 6.501 18 N -0.582 5.582 19 C 0.106 3.894 20 C 0.053 3.947 21 O -0.568 6.568 22 C 0.131 3.869 23 C -0.158 4.158 24 C -0.136 4.136 25 C -0.143 4.143 26 C 0.118 3.882 27 C 0.037 3.963 28 H 0.267 0.733 29 H 0.023 0.977 30 H -0.018 1.018 31 H 0.028 0.972 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.379 0.621 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.442 -18.064 -4.017 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.253 5.253 11 C -0.078 4.078 12 C -0.014 4.014 13 N -0.322 5.322 14 C 0.293 3.707 15 O -0.402 6.402 16 C 0.302 3.698 17 O -0.375 6.375 18 N -0.315 5.315 19 C -0.017 4.017 20 C -0.026 4.026 21 O -0.373 6.373 22 C 0.029 3.971 23 C -0.196 4.196 24 C -0.174 4.174 25 C -0.182 4.182 26 C -0.004 4.004 27 C -0.092 4.092 28 H 0.077 0.923 29 H 0.041 0.959 30 H -0.001 1.001 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.226 0.774 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 16.176 -16.113 -4.134 23.204 hybrid contribution -0.584 -2.431 -0.363 2.527 sum 15.592 -18.545 -4.496 24.642 Atomic orbital electron populations 1.70798 1.06934 1.30462 1.46596 1.25865 0.96460 1.02756 0.93796 0.83493 0.74832 0.75118 0.76557 1.20820 1.21322 1.21418 1.21928 0.94748 0.90848 1.55486 0.92387 1.19834 0.90610 0.88685 0.95035 1.62022 1.27624 1.02408 1.33267 1.22313 0.95041 0.99069 0.91350 1.22105 0.96511 0.82321 1.00446 1.48306 1.46118 1.08315 1.29498 1.20299 0.82158 0.84626 0.83592 1.90754 1.53061 1.28914 1.67430 1.20252 0.82306 0.77443 0.89774 1.90754 1.70866 1.46496 1.29405 1.47856 1.06667 1.65315 1.11669 1.21775 1.00426 0.93384 0.86117 1.22726 0.96380 0.93005 0.90469 1.86455 1.73028 1.23994 1.53822 1.22768 0.94687 0.97319 0.82340 1.23522 1.04082 0.96428 0.95608 1.22627 1.01318 0.96705 0.96725 1.23274 1.02924 0.97136 0.94819 1.21879 0.91667 0.99856 0.87006 1.22457 0.94998 0.90556 1.01202 0.92281 0.95920 1.00060 0.95329 0.88013 0.89738 0.90451 0.88605 0.89139 0.92521 0.92065 0.77436 0.86838 0.87780 0.91371 0.90398 0.90970 0.91506 0.88790 0.90109 0.89036 0.89719 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 13.65 55.43 0.76 -26.56 16 2 C 0.02 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 24.58 29.90 -169.99 -5.08 19.50 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.59 -16.11 8.41 -34.44 -0.29 -16.40 16 8 H 0.06 1.55 7.12 -52.49 -0.37 1.18 16 9 C 0.18 4.59 4.04 -4.98 -0.02 4.57 16 10 N -0.53 -10.78 4.62 -235.76 -1.09 -11.87 16 11 C 0.05 0.95 5.46 -3.70 -0.02 0.93 16 12 C 0.11 1.58 6.52 -3.60 -0.02 1.56 16 13 N -0.59 -8.68 3.01 -172.97 -0.52 -9.20 16 14 C 0.51 7.77 5.69 -11.58 -0.07 7.71 16 15 O -0.53 -8.86 15.45 5.50 0.08 -8.77 16 16 C 0.52 7.46 4.88 -11.58 -0.06 7.41 16 17 O -0.50 -8.43 12.80 5.50 0.07 -8.36 16 18 N -0.58 -6.49 2.68 -165.68 -0.44 -6.94 16 19 C 0.11 0.94 5.64 -4.04 -0.02 0.91 16 20 C 0.05 0.45 7.36 37.16 0.27 0.72 16 21 O -0.57 -4.65 13.46 -35.23 -0.47 -5.12 16 22 C 0.13 1.33 4.27 -67.11 -0.29 1.04 16 23 C -0.16 -1.68 7.38 -25.82 -0.19 -1.87 16 24 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 25 C -0.14 -1.55 7.44 -25.92 -0.19 -1.74 16 26 C 0.12 1.71 6.58 -3.60 -0.02 1.68 16 27 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 28 H 0.27 7.98 7.22 -40.82 -0.29 7.69 16 29 H 0.02 0.60 7.84 -51.93 -0.41 0.19 16 30 H -0.02 -0.49 7.99 -51.92 -0.41 -0.91 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.05 6.37 -51.93 -0.33 0.72 16 35 H 0.10 0.66 7.89 -51.93 -0.41 0.25 16 36 H 0.09 0.80 6.96 -51.93 -0.36 0.44 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.67 6.98 -51.93 -0.36 0.31 16 39 H 0.38 1.67 9.12 45.56 0.42 2.09 16 40 H 0.11 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.10 1.40 5.68 -51.93 -0.29 1.11 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.28 6.26 -51.93 -0.33 0.96 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.09 1.28 7.11 -51.93 -0.37 0.91 16 49 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -33.42 392.12 -9.34 -42.76 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.30 Total: 2.70 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.25 Total: 5.96 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -1.30 Total: -54.56 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.32 Total: -22.26 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.42 -9.34 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601474367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.764 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds