Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47257 * 240.00108 * 3 2 1 5 5 H 1.48501 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46805 * 119.99862 * 3 2 1 7 7 C 1.37877 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00018 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00118 * 169.99433 * 10 9 7 12 12 C 1.53239 * 109.34105 * 187.25278 * 11 10 9 13 13 N 1.47080 * 108.52154 * 306.17352 * 12 11 10 14 14 C 1.34783 * 120.88161 * 231.18772 * 13 12 11 15 15 O 1.21344 * 120.00316 * 181.53659 * 14 13 12 16 16 C 1.49450 * 119.99600 * 1.53657 * 14 13 12 17 17 O 1.21343 * 120.00288 * 353.51915 * 16 14 13 18 18 N 1.34783 * 119.99613 * 173.51622 * 16 14 13 19 19 C 1.46502 * 119.99595 * 180.27192 * 18 16 14 20 20 C 1.53002 * 109.46587 * 179.72570 * 19 18 16 21 21 O 1.42898 * 109.47013 * 65.00506 * 20 19 18 22 22 C 1.42897 * 113.99925 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47241 * 180.02562 * 22 21 20 24 24 C 1.53005 * 117.49821 * 243.62188 * 23 22 21 25 25 C 1.52994 * 60.00115 * 252.50884 * 24 23 22 26 26 C 1.47080 * 118.23887 * 51.45595 * 13 12 11 27 27 C 1.46895 * 111.00137 * 294.29773 * 10 9 7 28 28 H 0.97008 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47346 * 59.99442 * 9 7 2 30 30 H 1.09004 * 109.46550 * 299.99458 * 9 7 2 31 31 H 1.09000 * 109.49066 * 67.29623 * 11 10 9 32 32 H 1.08994 * 109.49621 * 307.21667 * 11 10 9 33 33 H 1.09004 * 109.62742 * 186.46443 * 12 11 10 34 34 H 1.08997 * 109.62702 * 65.88303 * 12 11 10 35 35 H 0.96996 * 120.00229 * 0.02562 * 18 16 14 36 36 H 1.08999 * 109.47354 * 299.72737 * 19 18 16 37 37 H 1.09006 * 109.46812 * 59.73153 * 19 18 16 38 38 H 1.09010 * 109.46958 * 184.99884 * 20 19 18 39 39 H 1.08995 * 109.47788 * 304.99988 * 20 19 18 40 40 H 1.09000 * 109.47188 * 299.99618 * 22 21 20 41 41 H 1.08998 * 109.47157 * 60.00056 * 22 21 20 42 42 H 1.08995 * 115.55305 * 29.32771 * 23 22 21 43 43 H 1.09004 * 117.49618 * 359.97438 * 24 23 22 44 44 H 1.09003 * 117.49814 * 145.01879 * 24 23 22 45 45 H 1.08999 * 117.50001 * 252.50925 * 25 24 23 46 46 H 1.09004 * 117.50113 * 107.48882 * 25 24 23 47 47 H 1.08994 * 109.62460 * 68.25435 * 26 13 12 48 48 H 1.09003 * 109.62727 * 188.83367 * 26 13 12 49 49 H 1.08999 * 109.49397 * 292.70548 * 27 10 9 50 50 H 1.09003 * 109.49441 * 52.78468 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2388 12 6 2.5638 -6.0031 0.4116 13 7 3.4616 -5.9862 -0.7533 14 6 3.7119 -7.1124 -1.4503 15 8 4.4769 -7.0859 -2.3918 16 6 3.0471 -8.3937 -1.0634 17 8 2.3755 -8.4484 -0.0542 18 7 3.1935 -9.4887 -1.8356 19 6 2.5369 -10.7432 -1.4595 20 6 2.8569 -11.8181 -2.5003 21 8 4.2572 -12.1023 -2.4764 22 6 4.6639 -13.0993 -3.4159 23 6 6.1734 -13.3216 -3.3022 24 6 7.0322 -12.9757 -4.5204 25 6 6.7886 -14.4392 -4.1469 26 6 4.0837 -4.7090 -1.1339 27 6 2.9766 -3.6491 -1.2494 28 1 -0.4851 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 0.8796 -5.1264 -0.6110 32 1 0.9161 -4.8191 1.1423 33 1 2.0632 -6.9694 0.4740 34 1 3.1395 -5.8264 1.3201 35 1 3.7305 -9.4452 -2.6421 36 1 2.8987 -11.0641 -0.4827 37 1 1.4586 -10.5899 -1.4153 38 1 2.2981 -12.7252 -2.2694 39 1 2.5756 -11.4603 -3.4906 40 1 4.1427 -14.0327 -3.2037 41 1 4.4201 -12.7683 -4.4254 42 1 6.6022 -13.1417 -2.3164 43 1 6.5216 -12.5901 -5.4029 44 1 8.0261 -12.5679 -4.3360 45 1 7.6222 -14.9944 -3.7168 46 1 6.1178 -15.0162 -4.7835 47 1 4.8027 -4.4103 -0.3711 48 1 4.5885 -4.8192 -2.0937 49 1 2.3147 -3.8994 -2.0784 50 1 3.4271 -2.6722 -1.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602239707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -60.129920 kcal Electronic energy + Delta-G solvation = -29204.577230 eV Core-core repulsion = 25040.893110 eV Total energy + Delta-G solvation = -4163.684120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89914 -39.17675 -38.62842 -37.55966 -37.17905 -35.30757 -34.16322 -32.36564 -30.72557 -30.39199 -28.44147 -27.27016 -25.85838 -24.60650 -23.23098 -22.85589 -22.54325 -21.67886 -21.13492 -20.72909 -19.38515 -17.60754 -17.56581 -17.12053 -16.55101 -16.31826 -16.17428 -15.94387 -15.51260 -14.93427 -14.77003 -14.72603 -14.56349 -14.42816 -14.06266 -13.77889 -13.62334 -13.50770 -13.23319 -12.90739 -12.65985 -12.35697 -12.05433 -11.99982 -11.97811 -11.56289 -11.40712 -11.22906 -10.95712 -10.91366 -10.77699 -10.76197 -10.70902 -10.57879 -10.52952 -10.02818 -9.88270 -9.51815 -9.35383 -8.93691 -8.55444 -8.42933 -7.28429 -6.03695 -4.05626 1.40763 2.29373 2.91652 3.20673 3.33482 3.37364 3.37589 3.40388 3.50551 4.21354 4.30047 4.38935 4.41626 4.41986 4.58657 4.63403 4.77679 4.81098 4.90860 4.97095 5.11087 5.15464 5.17295 5.31571 5.36177 5.40086 5.42453 5.48048 5.62368 5.63577 5.70799 5.71633 5.82584 5.87752 5.96903 6.32596 6.38656 6.46245 6.53889 6.61759 6.65920 6.93496 7.25748 7.31013 7.40108 7.71304 7.77198 7.99827 8.05122 8.15619 8.51263 9.01314 9.58752 11.06993 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.001785 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.026037 B =15680.325799 C =16391.986085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.042 3.958 12 C 0.059 3.941 13 N -0.569 5.569 14 C 0.502 3.498 15 O -0.535 6.535 16 C 0.513 3.487 17 O -0.509 6.509 18 N -0.696 5.696 19 C 0.120 3.880 20 C 0.049 3.951 21 O -0.382 6.382 22 C 0.094 3.906 23 C -0.155 4.155 24 C -0.176 4.176 25 C -0.174 4.174 26 C 0.110 3.890 27 C 0.053 3.947 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.024 0.976 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.025 0.975 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -29.301 -7.396 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.087 4.087 12 C -0.062 4.062 13 N -0.301 5.301 14 C 0.284 3.716 15 O -0.413 6.413 16 C 0.295 3.705 17 O -0.387 6.387 18 N -0.349 5.349 19 C -0.003 4.003 20 C -0.028 4.028 21 O -0.301 6.301 22 C 0.017 3.983 23 C -0.174 4.174 24 C -0.213 4.213 25 C -0.211 4.211 26 C -0.012 4.012 27 C -0.077 4.077 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.253 0.747 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.043 0.957 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.134 -29.032 -6.658 30.876 hybrid contribution -0.169 0.843 -1.137 1.426 sum 7.966 -28.188 -7.795 30.312 Atomic orbital electron populations 1.69948 1.06083 1.26922 1.50775 1.24989 0.94864 0.99331 0.95363 0.86548 0.79421 0.82699 0.78657 1.20274 1.21383 1.20141 1.21116 0.93458 0.89920 1.50391 0.91848 1.19725 0.90022 0.87214 0.96200 1.62108 1.28095 1.02887 1.33163 1.22412 0.95057 0.90462 1.00782 1.23388 0.92198 1.03991 0.86644 1.48184 1.44828 1.07644 1.29481 1.19863 0.83202 0.84906 0.83622 1.90730 1.36567 1.85377 1.28610 1.20341 0.81192 0.85296 0.83688 1.90371 1.40020 1.82985 1.25293 1.45707 1.51623 1.09400 1.28191 1.21523 0.98207 0.81732 0.98860 1.22780 0.83006 0.97925 0.99105 1.87943 1.23161 1.59194 1.59851 1.22016 0.93243 0.90904 0.92099 1.22138 0.93393 1.04349 0.97482 1.23090 1.01596 0.97911 0.98715 1.22979 1.03232 0.91733 1.03202 1.22150 0.96156 0.81219 1.01663 1.22406 0.94997 0.98932 0.91324 0.92850 0.99150 0.94979 0.95786 0.89985 0.83494 0.90857 0.74734 0.89819 0.89125 0.91135 0.92204 0.92778 0.92987 0.86754 0.88575 0.88444 0.88352 0.88691 0.90254 0.89194 0.95709 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.19 8.41 -34.44 -0.29 -14.47 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 9 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 10 N -0.54 -11.58 4.62 -235.47 -1.09 -12.67 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 12 C 0.06 0.94 6.35 -3.60 -0.02 0.92 16 13 N -0.57 -9.29 3.00 -172.69 -0.52 -9.80 16 14 C 0.50 7.81 7.77 -11.58 -0.09 7.72 16 15 O -0.53 -9.04 15.95 5.50 0.09 -8.96 16 16 C 0.51 6.86 7.81 -11.58 -0.09 6.77 16 17 O -0.51 -7.41 13.03 5.50 0.07 -7.34 16 18 N -0.70 -7.17 5.49 -60.73 -0.33 -7.50 16 19 C 0.12 0.91 6.06 -4.04 -0.02 0.89 16 20 C 0.05 0.28 6.07 37.16 0.23 0.51 16 21 O -0.38 -3.03 10.29 -35.23 -0.36 -3.39 16 22 C 0.09 0.57 6.22 37.16 0.23 0.80 16 23 C -0.16 -1.00 6.06 -90.62 -0.55 -1.55 16 24 C -0.18 -1.03 10.18 -26.73 -0.27 -1.30 16 25 C -0.17 -0.86 10.25 -26.73 -0.27 -1.13 16 26 C 0.11 1.83 6.62 -3.36 -0.02 1.81 16 27 C 0.05 1.03 5.47 -3.46 -0.02 1.01 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 30 H 0.03 0.89 7.97 -51.93 -0.41 0.47 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 33 H 0.15 2.27 3.92 -56.54 -0.22 2.05 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.42 4.12 7.96 -40.82 -0.32 3.80 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.05 0.28 7.88 -51.93 -0.41 -0.13 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.52 8.03 -51.93 -0.42 0.11 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.09 1.44 7.07 -51.93 -0.37 1.07 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -32.37 406.49 -9.98 -42.35 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.34 Total: 1.31 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.34 Total: 9.21 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.20 Total: -55.83 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.20 Total: -19.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.37 -9.98 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602239707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.776 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds