Wall clock time and date at job start Sat Apr 11 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47257 * 240.00108 * 3 2 1 5 5 H 1.48501 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46805 * 119.99862 * 3 2 1 7 7 C 1.37877 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00018 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00118 * 169.99433 * 10 9 7 12 12 C 1.53239 * 109.34105 * 187.25278 * 11 10 9 13 13 N 1.47080 * 108.52154 * 306.17352 * 12 11 10 14 14 C 1.34783 * 120.88161 * 231.18772 * 13 12 11 15 15 O 1.21344 * 120.00316 * 181.53659 * 14 13 12 16 16 C 1.49450 * 119.99600 * 1.53657 * 14 13 12 17 17 O 1.21343 * 120.00288 * 353.51915 * 16 14 13 18 18 N 1.34783 * 119.99613 * 173.51622 * 16 14 13 19 19 C 1.46502 * 119.99595 * 180.27192 * 18 16 14 20 20 C 1.53002 * 109.46587 * 179.72570 * 19 18 16 21 21 O 1.42898 * 109.47013 * 65.00506 * 20 19 18 22 22 C 1.42897 * 113.99925 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47241 * 180.02562 * 22 21 20 24 24 C 1.53005 * 117.49821 * 243.62188 * 23 22 21 25 25 C 1.52994 * 60.00115 * 252.50884 * 24 23 22 26 26 C 1.47080 * 118.23887 * 51.45595 * 13 12 11 27 27 C 1.46895 * 111.00137 * 294.29773 * 10 9 7 28 28 H 0.97008 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47346 * 59.99442 * 9 7 2 30 30 H 1.09004 * 109.46550 * 299.99458 * 9 7 2 31 31 H 1.09000 * 109.49066 * 67.29623 * 11 10 9 32 32 H 1.08994 * 109.49621 * 307.21667 * 11 10 9 33 33 H 1.09004 * 109.62742 * 186.46443 * 12 11 10 34 34 H 1.08997 * 109.62702 * 65.88303 * 12 11 10 35 35 H 0.96996 * 120.00229 * 0.02562 * 18 16 14 36 36 H 1.08999 * 109.47354 * 299.72737 * 19 18 16 37 37 H 1.09006 * 109.46812 * 59.73153 * 19 18 16 38 38 H 1.09010 * 109.46958 * 184.99884 * 20 19 18 39 39 H 1.08995 * 109.47788 * 304.99988 * 20 19 18 40 40 H 1.09000 * 109.47188 * 299.99618 * 22 21 20 41 41 H 1.08998 * 109.47157 * 60.00056 * 22 21 20 42 42 H 1.08995 * 115.55305 * 29.32771 * 23 22 21 43 43 H 1.09004 * 117.49618 * 359.97438 * 24 23 22 44 44 H 1.09003 * 117.49814 * 145.01879 * 24 23 22 45 45 H 1.08999 * 117.50001 * 252.50925 * 25 24 23 46 46 H 1.09004 * 117.50113 * 107.48882 * 25 24 23 47 47 H 1.08994 * 109.62460 * 68.25435 * 26 13 12 48 48 H 1.09003 * 109.62727 * 188.83367 * 26 13 12 49 49 H 1.08999 * 109.49397 * 292.70548 * 27 10 9 50 50 H 1.09003 * 109.49441 * 52.78468 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2388 12 6 2.5638 -6.0031 0.4116 13 7 3.4616 -5.9862 -0.7533 14 6 3.7119 -7.1124 -1.4503 15 8 4.4769 -7.0859 -2.3918 16 6 3.0471 -8.3937 -1.0634 17 8 2.3755 -8.4484 -0.0542 18 7 3.1935 -9.4887 -1.8356 19 6 2.5369 -10.7432 -1.4595 20 6 2.8569 -11.8181 -2.5003 21 8 4.2572 -12.1023 -2.4764 22 6 4.6639 -13.0993 -3.4159 23 6 6.1734 -13.3216 -3.3022 24 6 7.0322 -12.9757 -4.5204 25 6 6.7886 -14.4392 -4.1469 26 6 4.0837 -4.7090 -1.1339 27 6 2.9766 -3.6491 -1.2494 28 1 -0.4851 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 0.8796 -5.1264 -0.6110 32 1 0.9161 -4.8191 1.1423 33 1 2.0632 -6.9694 0.4740 34 1 3.1395 -5.8264 1.3201 35 1 3.7305 -9.4452 -2.6421 36 1 2.8987 -11.0641 -0.4827 37 1 1.4586 -10.5899 -1.4153 38 1 2.2981 -12.7252 -2.2694 39 1 2.5756 -11.4603 -3.4906 40 1 4.1427 -14.0327 -3.2037 41 1 4.4201 -12.7683 -4.4254 42 1 6.6022 -13.1417 -2.3164 43 1 6.5216 -12.5901 -5.4029 44 1 8.0261 -12.5679 -4.3360 45 1 7.6222 -14.9944 -3.7168 46 1 6.1178 -15.0162 -4.7835 47 1 4.8027 -4.4103 -0.3711 48 1 4.5885 -4.8192 -2.0937 49 1 2.3147 -3.8994 -2.0784 50 1 3.4271 -2.6722 -1.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602239707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:59 Heat of formation + Delta-G solvation = -83.581060 kcal Electronic energy + Delta-G solvation = -29205.594148 eV Core-core repulsion = 25040.893110 eV Total energy + Delta-G solvation = -4164.701038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06435 -40.12765 -39.38907 -39.00684 -37.70515 -36.42398 -35.53190 -34.36038 -32.17746 -31.07928 -30.17902 -27.89747 -27.42861 -25.89837 -24.51824 -23.84645 -23.25958 -23.06292 -21.99307 -21.59349 -20.72300 -18.86167 -18.41153 -18.27282 -17.99778 -17.32694 -17.17356 -16.79054 -16.60747 -16.38604 -16.06853 -15.80302 -15.63815 -15.47715 -15.32027 -15.28341 -14.98382 -14.40197 -14.21621 -14.10124 -13.90067 -13.57807 -13.28049 -13.12182 -12.82336 -12.77978 -12.56014 -12.54497 -12.38715 -12.35348 -12.23503 -12.06872 -12.00066 -11.74754 -11.36948 -11.33947 -11.20284 -10.61875 -10.47655 -10.38255 -10.18772 -9.92252 -9.08200 -8.20166 -6.30614 0.26182 1.21617 1.42769 1.45842 1.53569 2.04318 2.35156 2.41816 2.50405 2.94902 3.11896 3.20251 3.25577 3.75956 3.93091 3.95972 3.96995 4.01935 4.13269 4.18034 4.20744 4.29570 4.35269 4.40295 4.43417 4.52138 4.55928 4.62903 4.70072 4.72278 4.77888 4.81812 4.85986 4.90276 4.99789 5.01804 5.10241 5.18914 5.22933 5.24912 5.26224 5.41407 5.63261 5.90746 6.02566 6.14231 6.22139 6.27527 6.55903 6.61517 6.84135 6.86140 7.39129 8.90726 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.001785 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.026037 B =15680.325799 C =16391.986085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.541 5.541 11 C 0.042 3.958 12 C 0.073 3.927 13 N -0.577 5.577 14 C 0.502 3.498 15 O -0.549 6.549 16 C 0.514 3.486 17 O -0.523 6.523 18 N -0.681 5.681 19 C 0.116 3.884 20 C 0.051 3.949 21 O -0.407 6.407 22 C 0.093 3.907 23 C -0.170 4.170 24 C -0.185 4.185 25 C -0.162 4.162 26 C 0.121 3.879 27 C 0.056 3.944 28 H 0.264 0.736 29 H -0.040 1.040 30 H 0.009 0.991 31 H 0.017 0.983 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.419 0.581 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.014 0.986 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.910 -30.776 -7.884 32.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.087 4.087 12 C -0.048 4.048 13 N -0.310 5.310 14 C 0.285 3.715 15 O -0.427 6.427 16 C 0.296 3.704 17 O -0.402 6.402 18 N -0.333 5.333 19 C -0.006 4.006 20 C -0.025 4.025 21 O -0.327 6.327 22 C 0.017 3.983 23 C -0.189 4.189 24 C -0.222 4.222 25 C -0.199 4.199 26 C -0.001 4.001 27 C -0.073 4.073 28 H 0.073 0.927 29 H -0.023 1.023 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.256 0.744 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.032 0.968 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.135 -30.563 -7.166 32.694 hybrid contribution -0.478 1.194 -1.028 1.646 sum 8.657 -29.369 -8.194 31.696 Atomic orbital electron populations 1.70082 1.07779 1.27972 1.51613 1.25917 0.95724 1.03222 0.94727 0.85417 0.78106 0.77825 0.79142 1.19196 1.21016 1.19280 1.21438 0.93769 0.90874 1.50289 0.91495 1.19387 0.90069 0.88822 0.93560 1.62046 1.27215 1.03059 1.34227 1.22503 0.95863 0.89754 1.00593 1.23333 0.91535 1.03210 0.86736 1.48234 1.45094 1.07847 1.29779 1.20269 0.82814 0.85459 0.82985 1.90719 1.37153 1.85765 1.29099 1.19926 0.81324 0.85191 0.83998 1.90340 1.40912 1.82989 1.25969 1.45761 1.50706 1.09409 1.27420 1.21770 0.98666 0.80819 0.99350 1.22858 0.82452 0.98222 0.99005 1.87906 1.24352 1.59908 1.60575 1.22102 0.92925 0.91145 0.92137 1.22178 0.93937 1.05784 0.96974 1.23151 1.01442 0.98979 0.98665 1.23055 1.03203 0.91254 1.02370 1.21985 0.94920 0.80659 1.02571 1.22368 0.95320 0.99560 0.90040 0.92706 1.02255 0.97334 0.96462 0.89693 0.82303 0.90304 0.74385 0.90342 0.87826 0.88680 0.91063 0.91400 0.92231 0.88208 0.88210 0.88801 0.87827 0.87415 0.89372 0.88238 0.96814 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.53 -29.67 8.41 25.60 0.22 -29.45 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.18 4.72 85.56 0.40 11.59 16 10 N -0.54 -23.68 4.62 -898.90 -4.15 -27.83 16 11 C 0.04 1.55 5.62 86.38 0.49 2.03 16 12 C 0.07 2.26 6.35 86.35 0.55 2.81 16 13 N -0.58 -18.26 3.00 -818.62 -2.46 -20.72 16 14 C 0.50 15.00 7.77 87.27 0.68 15.68 16 15 O -0.55 -17.89 15.95 -3.23 -0.05 -17.94 16 16 C 0.51 13.03 7.81 87.27 0.68 13.71 16 17 O -0.52 -14.42 13.03 -3.23 -0.04 -14.46 16 18 N -0.68 -12.88 5.49 -464.39 -2.55 -15.43 16 19 C 0.12 1.53 6.06 86.38 0.52 2.05 16 20 C 0.05 0.46 6.07 71.98 0.44 0.89 16 21 O -0.41 -5.76 10.29 -148.98 -1.53 -7.30 16 22 C 0.09 0.96 6.22 71.98 0.45 1.41 16 23 C -0.17 -2.03 6.06 -10.79 -0.07 -2.09 16 24 C -0.19 -2.01 10.18 30.59 0.31 -1.70 16 25 C -0.16 -1.35 10.25 30.59 0.31 -1.04 16 26 C 0.12 3.93 6.62 86.50 0.57 4.50 16 27 C 0.06 2.22 5.47 86.54 0.47 2.69 16 28 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 29 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 30 H 0.01 0.49 7.97 -2.39 -0.02 0.47 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 3.07 7.99 -2.39 -0.02 3.05 16 33 H 0.16 4.71 3.92 -75.37 -0.30 4.42 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.42 7.61 7.96 -92.71 -0.74 6.88 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.06 0.51 7.88 -2.39 -0.02 0.49 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 0.98 8.03 -2.38 -0.02 0.96 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.10 3.07 7.07 -2.39 -0.02 3.05 16 49 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.09 3.60 6.67 -2.39 -0.02 3.58 16 Total: -1.00 -69.72 406.49 -2.07 -71.79 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.08 Total: 18.07 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.49 Total: 23.68 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -8.88 Total: -120.04 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.63 Total: -39.70 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.72 -2.07 -71.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602239707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.789 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds