Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99968 * 2 1 4 4 H 1.48504 * 109.46732 * 239.99997 * 3 2 1 5 5 H 1.48499 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47584 * 119.99855 * 3 2 1 7 7 C 1.38811 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99992 * 163.08024 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.08230 * 7 2 1 10 10 C 1.46925 * 120.63187 * 331.84553 * 9 7 2 11 11 C 1.53196 * 108.77012 * 233.58629 * 10 9 7 12 12 C 1.53035 * 109.31403 * 305.36074 * 11 10 9 13 13 N 1.46499 * 109.46130 * 181.39094 * 12 11 10 14 14 C 1.34772 * 120.00420 * 155.00311 * 13 12 11 15 15 O 1.21589 * 119.99943 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00581 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00305 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47258 * 275.00015 * 17 16 14 19 19 C 1.53001 * 109.47513 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46956 * 59.99830 * 19 18 17 21 21 C 1.50700 * 109.46768 * 180.02562 * 20 19 18 22 22 O 1.20820 * 120.00216 * 0.02562 * 21 20 19 23 23 O 1.34232 * 119.99944 * 179.97438 * 21 20 19 24 24 C 1.53003 * 109.47148 * 300.00393 * 20 19 18 25 25 C 1.52988 * 109.47348 * 59.99843 * 24 20 19 26 26 C 1.53036 * 109.53749 * 61.36688 * 12 11 10 27 27 C 1.46933 * 120.62987 * 151.81747 * 9 7 2 28 28 H 0.97003 * 119.99915 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.58677 * 113.79912 * 10 9 7 30 30 H 1.09001 * 109.70627 * 353.44166 * 10 9 7 31 31 H 1.09001 * 109.49494 * 185.41220 * 11 10 9 32 32 H 1.08993 * 109.49873 * 65.31705 * 11 10 9 33 33 H 1.09001 * 109.46275 * 301.36290 * 12 11 10 34 34 H 0.97004 * 120.00042 * 334.99561 * 13 12 11 35 35 H 0.97004 * 119.99881 * 359.97438 * 16 14 13 36 36 H 1.08996 * 109.47386 * 34.99723 * 17 16 14 37 37 H 1.08996 * 109.47162 * 59.99739 * 18 17 16 38 38 H 1.09005 * 109.46834 * 300.00057 * 18 17 16 39 39 H 1.09003 * 109.46788 * 300.00294 * 19 18 17 40 40 H 1.08990 * 109.46997 * 179.97438 * 19 18 17 41 41 H 1.08996 * 109.47326 * 59.99996 * 20 19 18 42 42 H 0.96693 * 117.00185 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.47009 * 180.02562 * 24 20 19 44 44 H 1.09005 * 109.46834 * 300.00077 * 24 20 19 45 45 H 1.09005 * 109.46962 * 60.00312 * 25 24 20 46 46 H 1.08999 * 109.47407 * 179.97438 * 25 24 20 47 47 H 1.08997 * 109.49741 * 58.59022 * 26 12 11 48 48 H 1.09003 * 109.49771 * 178.68284 * 26 12 11 49 49 H 1.08992 * 109.58831 * 246.19955 * 27 9 7 50 50 H 1.09003 * 109.58337 * 6.48594 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3700 -2.3622 0.3461 10 6 0.2259 -2.3399 1.2677 11 6 0.4973 -3.3191 2.4142 12 6 0.8118 -4.7007 1.8361 13 7 1.0392 -5.6475 2.9306 14 6 0.8359 -6.9653 2.7349 15 8 0.4632 -7.3684 1.6500 16 7 1.0456 -7.8365 3.7417 17 6 0.8240 -9.2689 3.5291 18 6 -0.6544 -9.5947 3.7508 19 6 -0.8858 -11.0908 3.5293 20 6 -0.0337 -11.8903 4.5171 21 6 -0.2611 -13.3639 4.2985 22 8 -1.0259 -13.7365 3.4405 23 8 0.3867 -14.2627 5.0564 24 6 1.4447 -11.5645 4.2954 25 6 1.6760 -10.0685 4.5167 26 6 2.0672 -4.6172 0.9649 27 6 1.8138 -3.6529 -0.1980 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6771 -2.6404 0.7364 30 1 0.0965 -1.3346 1.6686 31 1 -0.3834 -3.3840 3.0532 32 1 1.3469 -2.9675 2.9995 33 1 -0.0282 -5.0408 1.2305 34 1 1.3363 -5.3259 3.7963 35 1 1.3433 -7.5150 4.6071 36 1 1.1052 -9.5327 2.5096 37 1 -1.2615 -9.0248 3.0474 38 1 -0.9357 -9.3309 4.7703 39 1 -0.6044 -11.3550 2.5099 40 1 -1.9389 -11.3229 3.6877 41 1 -0.3150 -11.6261 5.5364 42 1 0.2086 -15.1964 4.8789 43 1 2.0518 -12.1344 4.9987 44 1 1.7261 -11.8287 3.2759 45 1 1.3947 -9.8043 5.5362 46 1 2.7293 -9.8365 4.3593 47 1 2.9021 -4.2536 1.5638 48 1 2.3040 -5.6062 0.5724 49 1 1.0402 -4.0605 -0.8487 50 1 2.7332 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738427248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -147.748150 kcal Electronic energy + Delta-G solvation = -29747.888319 eV Core-core repulsion = 25580.404787 eV Total energy + Delta-G solvation = -4167.483532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66942 -41.14233 -39.49589 -38.60798 -37.10105 -35.94942 -35.20916 -33.84554 -31.89439 -31.79766 -31.38862 -30.26460 -26.91140 -25.24468 -23.97587 -23.85223 -23.53416 -22.13670 -21.65185 -21.05107 -20.82897 -19.29944 -18.98369 -18.57954 -17.80121 -17.51646 -16.86473 -16.75352 -16.27810 -16.04672 -15.75611 -15.36576 -15.27024 -15.09191 -14.99624 -14.74279 -14.52244 -14.32243 -14.08290 -13.90529 -13.51006 -13.21319 -13.19957 -12.98722 -12.63322 -12.56158 -12.54572 -12.53061 -12.33991 -12.22032 -12.11638 -12.02061 -11.85809 -11.60809 -11.52428 -11.40527 -11.34196 -11.29260 -11.10026 -10.53913 -10.20953 -9.68056 -8.69720 -7.86566 -5.32446 1.20794 1.49862 1.51350 1.58828 1.74445 2.14632 2.24412 2.53176 3.26551 3.35199 3.55796 3.68044 3.68483 3.92708 3.94405 4.06285 4.08562 4.16426 4.36417 4.36929 4.38320 4.48065 4.48433 4.54907 4.66859 4.71087 4.83804 4.86124 4.87075 4.97954 5.06469 5.08478 5.09401 5.16432 5.18002 5.19222 5.30576 5.33588 5.37064 5.48499 5.62553 5.64518 5.66000 5.67588 5.71998 6.13722 6.40034 7.00358 7.15522 7.22942 7.70303 7.84995 8.38374 9.20416 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041078 B = 0.001765 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.460346 B =15857.827504 C =15969.828816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.726 5.726 17 C 0.159 3.841 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.075 4.075 21 C 0.486 3.514 22 O -0.557 6.557 23 O -0.509 6.509 24 C -0.102 4.102 25 C -0.112 4.112 26 C -0.122 4.122 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.008 1.008 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.410 0.590 35 H 0.413 0.587 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.140 0.860 42 H 0.426 0.574 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.004 0.996 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -25.435 19.105 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.166 4.166 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.520 6.520 16 N -0.382 5.382 17 C 0.054 3.946 18 C -0.161 4.161 19 C -0.136 4.136 20 C -0.094 4.094 21 C 0.330 3.670 22 O -0.448 6.448 23 O -0.322 6.322 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.157 0.843 42 H 0.287 0.713 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.022 0.978 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.443 -25.361 17.967 31.270 hybrid contribution -0.099 0.640 -0.301 0.714 sum 3.344 -24.721 17.666 30.568 Atomic orbital electron populations 1.70185 1.06708 1.26019 1.55259 1.25836 0.96053 1.01576 1.01085 0.85304 0.77506 0.79006 0.78378 1.20371 1.22090 1.20041 1.19488 0.92875 0.85846 1.41243 0.91487 1.44338 1.35930 1.02142 1.50757 1.20572 0.87660 0.97799 0.88799 1.22244 1.01960 0.93576 0.98845 1.20441 0.96749 0.87787 0.87383 1.45115 1.72734 1.04375 1.15918 1.16215 0.78110 0.81610 0.84268 1.90907 1.55502 1.78689 1.26862 1.44999 1.73040 1.06313 1.13874 1.20901 0.95073 0.78457 1.00181 1.21870 0.96444 0.94886 1.02862 1.21320 0.99900 0.93829 0.98591 1.21176 0.99021 0.85207 1.04000 1.23844 0.75526 0.90693 0.76929 1.90738 1.37119 1.82299 1.34657 1.84493 1.65483 1.22720 1.59496 1.21468 0.92548 0.96602 1.03346 1.21747 1.00303 0.93121 0.99852 1.22168 0.98012 0.98358 0.97732 1.20967 0.97249 0.86046 0.93951 0.94017 0.98941 0.91775 0.90537 0.90982 0.92994 0.75361 0.74997 0.92450 0.93899 0.89199 0.92975 0.91269 0.84274 0.71282 0.87778 0.92237 0.88099 0.89659 0.91449 0.92545 0.97777 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.38 11.19 21.65 0.24 -55.14 16 2 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 3 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.26 -14.58 9.58 84.03 0.81 -13.77 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 9 N -0.61 -30.97 2.99 -699.10 -2.09 -33.06 16 10 C 0.18 8.55 5.30 86.36 0.46 9.01 16 11 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 12 C 0.18 6.24 2.41 45.02 0.11 6.35 16 13 N -0.73 -18.60 5.08 -457.71 -2.33 -20.93 16 14 C 0.70 19.31 8.49 179.06 1.52 20.83 16 15 O -0.64 -24.50 15.67 -4.00 -0.06 -24.57 16 16 N -0.73 -12.37 5.08 -457.82 -2.33 -14.70 16 17 C 0.16 2.54 2.46 44.99 0.11 2.65 16 18 C -0.12 -1.98 5.49 30.60 0.17 -1.81 16 19 C -0.10 -1.54 4.49 30.60 0.14 -1.40 16 20 C -0.08 -0.75 2.63 -11.54 -0.03 -0.78 16 21 C 0.49 6.66 7.63 71.24 0.54 7.21 16 22 O -0.56 -12.46 16.74 21.98 0.37 -12.09 16 23 O -0.51 -3.97 13.32 -51.43 -0.69 -4.66 16 24 C -0.10 -0.78 5.13 30.59 0.16 -0.63 16 25 C -0.11 -0.82 5.39 30.59 0.16 -0.65 16 26 C -0.12 -4.45 5.65 30.67 0.17 -4.28 16 27 C 0.14 6.38 6.52 86.36 0.56 6.94 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 30 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 34 H 0.41 7.43 8.62 -92.71 -0.80 6.63 16 35 H 0.41 3.88 8.62 -92.71 -0.80 3.08 16 36 H 0.06 1.32 7.58 -2.39 -0.02 1.30 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 40 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.43 0.32 9.10 -74.06 -0.67 -0.35 16 43 H 0.10 0.44 8.11 -2.39 -0.02 0.42 16 44 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 49 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 50 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 Total: -1.00 -79.63 396.33 -0.69 -80.33 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.31 Total: 15.30 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 5.47 Total: 23.00 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -6.50 Total: -123.82 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.38 Total: -41.32 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -79.63 -0.69 -80.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.423 kcal (2) G-P(sol) polarization free energy of solvation -79.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds