Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99794 * 2 1 4 4 C 1.52992 * 109.47248 * 72.28906 * 3 2 1 5 5 C 1.53124 * 109.52582 * 182.77697 * 4 3 2 6 6 C 1.53036 * 109.28084 * 182.44068 * 5 4 3 7 7 N 1.46846 * 109.52066 * 59.17911 * 6 5 4 8 8 C 1.46904 * 110.99894 * 174.16345 * 7 6 5 9 9 C 1.46847 * 111.19978 * 298.25595 * 7 6 5 10 10 C 1.53038 * 109.52480 * 61.74597 * 9 7 6 11 11 C 1.46901 * 110.99658 * 236.04652 * 2 1 3 12 12 N 1.46505 * 109.47149 * 293.95102 * 11 2 1 13 13 N 1.40159 * 126.14734 * 269.95995 * 12 11 2 14 14 C 1.32244 * 107.75639 * 179.75922 * 13 12 11 15 15 C 1.40118 * 125.92376 * 180.29203 * 14 13 12 16 16 H 1.08002 * 119.99798 * 174.46290 * 15 14 13 17 17 C 1.40039 * 120.00210 * 354.46156 * 15 14 13 18 18 N 1.30791 * 119.99940 * 6.05685 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 186.05237 * 17 15 14 20 20 H 1.48503 * 109.46856 * 94.98332 * 19 17 15 21 21 H 1.48500 * 109.47233 * 214.98141 * 19 17 15 22 22 H 1.48504 * 109.47514 * 334.98565 * 19 17 15 23 23 N 1.38496 * 108.14700 * 0.43913 * 14 13 12 24 24 C 1.46495 * 125.83362 * 179.82405 * 23 14 13 25 25 C 1.34726 * 108.32874 * 359.55276 * 23 14 13 26 26 S 1.71203 * 125.97231 * 180.26444 * 25 23 14 27 27 H 1.08998 * 109.47386 * 187.91614 * 1 2 3 28 28 H 1.08997 * 109.47559 * 307.92114 * 1 2 3 29 29 H 1.09005 * 109.47101 * 67.92248 * 1 2 3 30 30 H 1.09002 * 109.46718 * 192.29026 * 3 2 1 31 31 H 1.09000 * 109.47193 * 312.28859 * 3 2 1 32 32 H 1.08999 * 109.52397 * 302.96593 * 4 3 2 33 33 H 1.09000 * 109.49781 * 302.38493 * 5 4 3 34 34 H 1.08997 * 109.49815 * 62.49483 * 5 4 3 35 35 H 1.08998 * 109.45854 * 299.16720 * 6 5 4 36 36 H 1.08998 * 109.45915 * 179.19436 * 6 5 4 37 37 H 1.09001 * 109.47554 * 184.21409 * 8 7 6 38 38 H 1.09003 * 109.46619 * 304.20684 * 8 7 6 39 39 H 1.09000 * 109.47104 * 64.20443 * 8 7 6 40 40 H 1.09003 * 109.46272 * 301.73096 * 9 7 6 41 41 H 1.09004 * 109.45180 * 181.75543 * 9 7 6 42 42 H 1.08997 * 109.50724 * 180.88189 * 10 9 7 43 43 H 1.09001 * 109.53410 * 60.78039 * 10 9 7 44 44 H 1.08997 * 109.46912 * 173.95679 * 11 2 1 45 45 H 1.09001 * 109.47328 * 53.95502 * 11 2 1 46 46 H 0.97000 * 120.00212 * 179.97438 * 18 17 15 47 47 H 1.09005 * 109.47259 * 269.71016 * 24 23 14 48 48 H 1.09001 * 109.47429 * 149.71452 * 24 23 14 49 49 H 1.09000 * 109.47728 * 29.71252 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7685 2.0048 1.3741 5 6 2.2539 3.4569 1.3547 6 6 2.0806 4.0663 2.7478 7 7 2.8523 3.2864 3.7239 8 6 2.8216 3.9220 5.0479 9 6 2.3727 1.9003 3.7944 10 6 2.5547 1.2262 2.4325 11 6 1.9954 -0.7660 -1.1376 12 7 1.6469 -2.1799 -0.9774 13 7 2.4162 -3.1521 -0.3237 14 6 1.7591 -4.2979 -0.3896 15 6 2.1825 -5.5205 0.1482 16 1 1.5287 -6.3796 0.1168 17 6 3.4534 -5.6285 0.7265 18 7 4.1983 -4.5634 0.8719 19 14 4.0844 -7.2939 1.2903 20 1 4.9108 -7.8998 0.2154 21 1 4.9104 -7.1224 2.5124 22 1 2.9339 -8.1834 1.5910 23 7 0.5815 -4.0804 -1.0854 24 6 -0.4360 -5.0905 -1.3861 25 6 0.5289 -2.7798 -1.4331 26 16 -0.7365 -2.0216 -2.3020 27 1 -0.3634 -1.0178 0.1415 28 1 -0.3634 0.6315 0.8106 29 1 -0.3633 0.3863 -0.9524 30 1 3.0630 1.3507 -0.2188 31 1 1.4800 1.9584 -0.7602 32 1 0.7061 1.9781 1.6165 33 1 3.3066 3.4850 1.0735 34 1 1.6686 4.0266 0.6329 35 1 1.0260 4.0504 3.0225 36 1 2.4386 5.0958 2.7409 37 1 3.4610 3.3655 5.7331 38 1 3.1817 4.9476 4.9670 39 1 1.7993 3.9247 5.4260 40 1 1.3166 1.8946 4.0642 41 1 2.9430 1.3567 4.5477 42 1 2.1842 0.2022 2.4809 43 1 3.6121 1.2186 2.1680 44 1 3.0796 -0.6612 -1.1756 45 1 1.5610 -0.3872 -2.0628 46 1 5.0785 -4.6382 1.2728 47 1 -0.2113 -5.5585 -2.3445 48 1 -1.4161 -4.6158 -1.4345 49 1 -0.4379 -5.8487 -0.6031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794625955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = 85.887476 kcal Electronic energy + Delta-G solvation = -28268.573636 eV Core-core repulsion = 24586.266927 eV Total energy + Delta-G solvation = -3682.306709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89410 -39.30121 -37.25503 -34.59352 -33.95825 -33.12426 -30.83620 -30.63451 -28.41507 -27.80686 -26.57004 -26.11343 -24.71205 -23.19329 -22.77288 -21.44008 -20.89617 -20.64183 -19.54148 -17.77055 -16.68735 -16.10359 -15.77934 -15.70545 -15.27283 -15.07532 -14.93893 -14.81885 -14.57023 -14.45033 -14.03851 -13.43608 -13.34043 -12.96056 -12.82172 -12.42954 -12.31094 -12.20707 -12.18550 -11.92963 -11.80706 -11.55875 -11.47863 -11.43836 -11.23466 -11.13616 -11.03557 -10.65040 -10.52758 -10.45132 -10.27165 -10.21142 -10.04480 -9.53760 -9.21180 -8.87457 -8.42998 -8.05337 -7.03453 -6.79807 -6.64580 -5.12639 2.30334 2.55603 2.78809 2.91793 2.95861 3.34336 3.54159 3.65424 3.85699 4.04307 4.30746 4.76431 4.83821 4.84421 4.86533 5.09800 5.18952 5.27005 5.30826 5.41400 5.45887 5.48556 5.52261 5.54709 5.66316 5.67956 5.68981 5.77703 5.83967 5.86512 5.96206 5.97446 6.06444 6.07633 6.12632 6.22082 6.31609 6.44220 6.53425 6.57802 6.65914 6.81579 6.97796 6.99988 7.02727 7.21717 7.28478 7.59786 7.79626 8.23923 8.36117 9.15338 9.94200 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.003483 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.833565 B = 8037.415843 C =10154.315021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.548 5.548 3 C 0.069 3.931 4 C -0.080 4.080 5 C -0.111 4.111 6 C 0.058 3.942 7 N -0.544 5.544 8 C 0.025 3.975 9 C 0.055 3.945 10 C -0.101 4.101 11 C 0.325 3.675 12 N -0.368 5.368 13 N -0.329 5.329 14 C 0.372 3.628 15 C -0.440 4.440 16 H 0.097 0.903 17 C 0.077 3.923 18 N -0.734 5.734 19 Si 0.927 3.073 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.259 1.259 23 N -0.514 5.514 24 C 0.100 3.900 25 C 0.465 3.535 26 S -0.717 6.717 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.285 0.715 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 9.316 5.452 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.274 5.274 3 C -0.060 4.060 4 C -0.099 4.099 5 C -0.150 4.150 6 C -0.070 4.070 7 N -0.269 5.269 8 C -0.123 4.123 9 C -0.073 4.073 10 C -0.139 4.139 11 C 0.114 3.886 12 N -0.154 5.154 13 N -0.160 5.160 14 C 0.122 3.878 15 C -0.481 4.481 16 H 0.115 0.885 17 C -0.150 4.150 18 N -0.358 5.358 19 Si 0.750 3.250 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.183 1.183 23 N -0.215 5.215 24 C -0.043 4.043 25 C 0.095 3.905 26 S -0.593 6.593 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.342 10.168 5.624 11.697 hybrid contribution -0.839 -1.112 0.104 1.397 sum 0.504 9.055 5.728 10.727 Atomic orbital electron populations 1.22594 0.85951 1.02811 1.00342 1.61836 1.09204 1.13108 1.43251 1.22011 1.00086 0.87487 0.96399 1.21170 0.99980 0.93805 0.94995 1.21616 1.02200 0.95488 0.95665 1.22051 0.95307 0.97033 0.92574 1.61956 1.54956 1.02662 1.07308 1.22341 0.99734 0.99742 0.90503 1.22167 0.97656 0.88384 0.99049 1.21506 1.00810 0.99455 0.92089 1.21707 0.99787 0.74622 0.92523 1.49151 1.14175 1.09266 1.42772 1.79442 1.15331 0.93408 1.27811 1.21344 0.80095 0.95633 0.90692 1.18340 1.01140 0.92990 1.35640 0.88521 1.25822 0.95912 0.99110 0.94140 1.69883 1.08990 1.29492 1.27481 0.85970 0.79603 0.80514 0.78865 1.19178 1.19769 1.18305 1.45983 1.20537 1.07498 1.47482 1.21751 0.90866 0.90038 1.01629 1.22897 0.91006 0.85177 0.91416 1.92719 1.34763 1.73365 1.58481 0.91240 0.92791 0.93707 0.90701 0.94483 0.91521 0.90934 0.91678 0.95195 0.91058 0.91423 0.91637 0.95965 0.95278 0.90927 0.89889 0.91380 0.88063 0.90920 0.90349 0.91470 0.89275 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 8.06 60.07 0.48 1.04 16 2 N -0.55 -9.44 4.28 -246.85 -1.06 -10.50 16 3 C 0.07 0.93 4.39 -3.83 -0.02 0.91 16 4 C -0.08 -1.00 2.26 -90.50 -0.20 -1.20 16 5 C -0.11 -1.16 5.38 -26.65 -0.14 -1.30 16 6 C 0.06 0.60 5.46 -3.84 -0.02 0.58 16 7 N -0.54 -6.16 4.91 -242.95 -1.19 -7.35 16 8 C 0.03 0.23 9.59 60.07 0.58 0.81 16 9 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 10 C -0.10 -1.38 5.22 -26.65 -0.14 -1.51 16 11 C 0.33 6.22 5.97 -63.31 -0.38 5.84 16 12 N -0.37 -8.46 3.58 -65.05 -0.23 -8.70 16 13 N -0.33 -8.37 10.79 31.21 0.34 -8.04 16 14 C 0.37 9.13 7.50 -155.27 -1.16 7.97 16 15 C -0.44 -10.23 8.99 -38.20 -0.34 -10.57 16 16 H 0.10 2.02 7.07 -52.49 -0.37 1.65 16 17 C 0.08 1.73 5.49 -17.32 -0.10 1.64 16 18 N -0.73 -17.73 11.92 55.55 0.66 -17.06 16 19 Si 0.93 16.60 29.56 -169.99 -5.03 11.57 16 20 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 23 N -0.51 -11.61 3.17 -124.66 -0.39 -12.01 16 24 C 0.10 1.79 10.67 59.84 0.64 2.43 16 25 C 0.46 10.89 6.64 -86.94 -0.58 10.31 16 26 S -0.72 -17.05 27.02 -107.50 -2.91 -19.96 16 27 H 0.07 1.49 6.09 -51.93 -0.32 1.18 16 28 H 0.05 0.86 6.42 -51.93 -0.33 0.53 16 29 H 0.04 0.83 7.53 -51.93 -0.39 0.44 16 30 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 31 H 0.04 0.47 8.05 -51.93 -0.42 0.06 16 32 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.08 1.36 7.77 -51.93 -0.40 0.95 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.83 7.86 -51.93 -0.41 1.43 16 45 H 0.07 1.38 7.59 -51.93 -0.39 0.99 16 46 H 0.29 6.24 8.30 -40.82 -0.34 5.91 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.09 1.57 7.61 -51.93 -0.40 1.17 16 49 H 0.08 1.32 7.26 -51.93 -0.38 0.94 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -29.16 392.98 -13.62 -42.78 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.33 Total: 5.76 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: -1.40 Total: 17.58 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -1.88 Total: -63.66 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 16 Polarization: -17.05 SS G_CDS: -2.91 Total: -19.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.16 -13.62 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.668 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds