Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99794 * 2 1 4 4 C 1.52992 * 109.47248 * 72.28906 * 3 2 1 5 5 C 1.53124 * 109.52582 * 182.77697 * 4 3 2 6 6 C 1.53036 * 109.28084 * 182.44068 * 5 4 3 7 7 N 1.46846 * 109.52066 * 59.17911 * 6 5 4 8 8 C 1.46904 * 110.99894 * 174.16345 * 7 6 5 9 9 C 1.46847 * 111.19978 * 298.25595 * 7 6 5 10 10 C 1.53038 * 109.52480 * 61.74597 * 9 7 6 11 11 C 1.46901 * 110.99658 * 236.04652 * 2 1 3 12 12 N 1.46505 * 109.47149 * 293.95102 * 11 2 1 13 13 N 1.40159 * 126.14734 * 269.95995 * 12 11 2 14 14 C 1.32244 * 107.75639 * 179.75922 * 13 12 11 15 15 C 1.40118 * 125.92376 * 180.29203 * 14 13 12 16 16 H 1.08002 * 119.99798 * 174.46290 * 15 14 13 17 17 C 1.40039 * 120.00210 * 354.46156 * 15 14 13 18 18 N 1.30791 * 119.99940 * 6.05685 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 186.05237 * 17 15 14 20 20 H 1.48503 * 109.46856 * 94.98332 * 19 17 15 21 21 H 1.48500 * 109.47233 * 214.98141 * 19 17 15 22 22 H 1.48504 * 109.47514 * 334.98565 * 19 17 15 23 23 N 1.38496 * 108.14700 * 0.43913 * 14 13 12 24 24 C 1.46495 * 125.83362 * 179.82405 * 23 14 13 25 25 C 1.34726 * 108.32874 * 359.55276 * 23 14 13 26 26 S 1.71203 * 125.97231 * 180.26444 * 25 23 14 27 27 H 1.08998 * 109.47386 * 187.91614 * 1 2 3 28 28 H 1.08997 * 109.47559 * 307.92114 * 1 2 3 29 29 H 1.09005 * 109.47101 * 67.92248 * 1 2 3 30 30 H 1.09002 * 109.46718 * 192.29026 * 3 2 1 31 31 H 1.09000 * 109.47193 * 312.28859 * 3 2 1 32 32 H 1.08999 * 109.52397 * 302.96593 * 4 3 2 33 33 H 1.09000 * 109.49781 * 302.38493 * 5 4 3 34 34 H 1.08997 * 109.49815 * 62.49483 * 5 4 3 35 35 H 1.08998 * 109.45854 * 299.16720 * 6 5 4 36 36 H 1.08998 * 109.45915 * 179.19436 * 6 5 4 37 37 H 1.09001 * 109.47554 * 184.21409 * 8 7 6 38 38 H 1.09003 * 109.46619 * 304.20684 * 8 7 6 39 39 H 1.09000 * 109.47104 * 64.20443 * 8 7 6 40 40 H 1.09003 * 109.46272 * 301.73096 * 9 7 6 41 41 H 1.09004 * 109.45180 * 181.75543 * 9 7 6 42 42 H 1.08997 * 109.50724 * 180.88189 * 10 9 7 43 43 H 1.09001 * 109.53410 * 60.78039 * 10 9 7 44 44 H 1.08997 * 109.46912 * 173.95679 * 11 2 1 45 45 H 1.09001 * 109.47328 * 53.95502 * 11 2 1 46 46 H 0.97000 * 120.00212 * 179.97438 * 18 17 15 47 47 H 1.09005 * 109.47259 * 269.71016 * 24 23 14 48 48 H 1.09001 * 109.47429 * 149.71452 * 24 23 14 49 49 H 1.09000 * 109.47728 * 29.71252 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7685 2.0048 1.3741 5 6 2.2539 3.4569 1.3547 6 6 2.0806 4.0663 2.7478 7 7 2.8523 3.2864 3.7239 8 6 2.8216 3.9220 5.0479 9 6 2.3727 1.9003 3.7944 10 6 2.5547 1.2262 2.4325 11 6 1.9954 -0.7660 -1.1376 12 7 1.6469 -2.1799 -0.9774 13 7 2.4162 -3.1521 -0.3237 14 6 1.7591 -4.2979 -0.3896 15 6 2.1825 -5.5205 0.1482 16 1 1.5287 -6.3796 0.1168 17 6 3.4534 -5.6285 0.7265 18 7 4.1983 -4.5634 0.8719 19 14 4.0844 -7.2939 1.2903 20 1 4.9108 -7.8998 0.2154 21 1 4.9104 -7.1224 2.5124 22 1 2.9339 -8.1834 1.5910 23 7 0.5815 -4.0804 -1.0854 24 6 -0.4360 -5.0905 -1.3861 25 6 0.5289 -2.7798 -1.4331 26 16 -0.7365 -2.0216 -2.3020 27 1 -0.3634 -1.0178 0.1415 28 1 -0.3634 0.6315 0.8106 29 1 -0.3633 0.3863 -0.9524 30 1 3.0630 1.3507 -0.2188 31 1 1.4800 1.9584 -0.7602 32 1 0.7061 1.9781 1.6165 33 1 3.3066 3.4850 1.0735 34 1 1.6686 4.0266 0.6329 35 1 1.0260 4.0504 3.0225 36 1 2.4386 5.0958 2.7409 37 1 3.4610 3.3655 5.7331 38 1 3.1817 4.9476 4.9670 39 1 1.7993 3.9247 5.4260 40 1 1.3166 1.8946 4.0642 41 1 2.9430 1.3567 4.5477 42 1 2.1842 0.2022 2.4809 43 1 3.6121 1.2186 2.1680 44 1 3.0796 -0.6612 -1.1756 45 1 1.5610 -0.3872 -2.0628 46 1 5.0785 -4.6382 1.2728 47 1 -0.2113 -5.5585 -2.3445 48 1 -1.4161 -4.6158 -1.4345 49 1 -0.4379 -5.8487 -0.6031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794625955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = 69.737147 kcal Electronic energy + Delta-G solvation = -28269.273967 eV Core-core repulsion = 24586.266927 eV Total energy + Delta-G solvation = -3683.007039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65147 -40.31966 -38.55372 -36.09409 -35.62226 -34.37939 -32.37794 -31.75795 -29.86212 -29.05241 -28.27961 -27.50478 -25.90678 -24.31766 -23.97569 -22.92031 -22.64152 -21.87039 -20.56151 -19.49587 -18.38587 -17.58640 -17.43672 -16.84167 -16.69929 -16.42808 -16.20287 -16.05979 -15.90630 -15.47029 -15.33219 -14.93316 -14.51051 -14.15111 -14.02349 -13.71989 -13.63418 -13.44519 -13.31357 -13.29162 -13.06787 -13.03535 -12.86890 -12.69068 -12.51764 -12.44372 -12.36877 -12.09782 -11.97272 -11.72231 -11.52870 -11.37333 -11.27524 -11.21910 -10.87281 -10.65201 -9.47736 -9.28642 -8.76963 -8.64068 -8.48869 -6.95166 0.52521 0.79401 1.29208 1.45327 1.61233 1.65362 1.87002 2.13180 2.41347 2.88164 3.01487 3.09933 3.57411 3.75251 3.86079 3.93705 4.05326 4.07744 4.24577 4.31717 4.35271 4.40355 4.43886 4.45066 4.54815 4.60281 4.61877 4.67386 4.68766 4.71126 4.77848 4.84025 4.89996 4.92131 4.94792 5.00078 5.08522 5.11239 5.11502 5.23163 5.27397 5.37535 5.50080 5.73136 5.84219 5.93917 6.11124 6.16939 6.18922 6.49191 6.58458 7.34296 8.26238 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.003483 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.833565 B = 8037.415843 C =10154.315021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.555 5.555 3 C 0.070 3.930 4 C -0.073 4.073 5 C -0.105 4.105 6 C 0.058 3.942 7 N -0.555 5.555 8 C 0.025 3.975 9 C 0.061 3.939 10 C -0.094 4.094 11 C 0.322 3.678 12 N -0.368 5.368 13 N -0.363 5.363 14 C 0.351 3.649 15 C -0.454 4.454 16 H 0.118 0.882 17 C 0.036 3.964 18 N -0.774 5.774 19 Si 1.005 2.995 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.246 1.246 23 N -0.517 5.517 24 C 0.095 3.905 25 C 0.455 3.545 26 S -0.736 6.736 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.291 0.709 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 9.409 6.135 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.281 5.281 3 C -0.057 4.057 4 C -0.092 4.092 5 C -0.143 4.143 6 C -0.070 4.070 7 N -0.280 5.280 8 C -0.123 4.123 9 C -0.067 4.067 10 C -0.132 4.132 11 C 0.111 3.889 12 N -0.154 5.154 13 N -0.195 5.195 14 C 0.103 3.897 15 C -0.495 4.495 16 H 0.136 0.864 17 C -0.187 4.187 18 N -0.398 5.398 19 Si 0.824 3.176 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.169 1.169 23 N -0.218 5.218 24 C -0.046 4.046 25 C 0.084 3.916 26 S -0.612 6.612 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.676 10.285 6.302 12.178 hybrid contribution -0.920 -1.109 -0.084 1.443 sum 0.757 9.176 6.218 11.110 Atomic orbital electron populations 1.22320 0.86369 1.00624 1.00559 1.61825 1.08789 1.15164 1.42349 1.22133 1.00430 0.85552 0.97626 1.21112 0.99385 0.95077 0.93619 1.21578 1.02347 0.93819 0.96541 1.22116 0.95267 0.97722 0.91907 1.61963 1.55195 1.02191 1.08696 1.22395 1.00049 1.00417 0.89453 1.22035 0.97468 0.89336 0.97880 1.21359 1.00074 0.98044 0.93700 1.21868 1.00221 0.73563 0.93204 1.49460 1.13732 1.10136 1.42031 1.79346 1.16675 0.94446 1.29024 1.21725 0.80780 0.96010 0.91231 1.18895 1.02073 0.93162 1.35364 0.86446 1.26873 0.95556 1.02867 0.93433 1.69982 1.09630 1.32055 1.28147 0.84823 0.79144 0.75477 0.78167 1.18821 1.19638 1.16880 1.46268 1.20803 1.07807 1.46883 1.22025 0.89750 0.89623 1.03219 1.22936 0.91100 0.85759 0.91821 1.92616 1.35405 1.73834 1.59384 0.95044 0.90928 0.94445 0.90060 0.93004 0.92129 0.90965 0.89894 0.95250 0.89184 0.91253 0.90082 0.95716 0.95586 0.91150 0.93256 0.92386 0.87477 0.90905 0.89784 0.89972 0.89294 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 8.06 127.69 1.03 2.83 16 2 N -0.56 -19.47 4.28 -934.89 -4.00 -23.46 16 3 C 0.07 1.85 4.39 86.30 0.38 2.23 16 4 C -0.07 -1.75 2.26 -10.71 -0.02 -1.78 16 5 C -0.10 -1.97 5.38 30.65 0.16 -1.80 16 6 C 0.06 1.05 5.46 86.33 0.47 1.52 16 7 N -0.56 -11.75 4.91 -922.57 -4.53 -16.28 16 8 C 0.02 0.41 9.59 127.69 1.22 1.64 16 9 C 0.06 1.47 5.46 86.33 0.47 1.94 16 10 C -0.09 -2.60 5.22 30.65 0.16 -2.44 16 11 C 0.32 12.61 5.97 170.80 1.02 13.63 16 12 N -0.37 -17.37 3.58 -359.71 -1.29 -18.66 16 13 N -0.36 -18.95 10.79 -55.17 -0.60 -19.55 16 14 C 0.35 17.46 7.50 133.52 1.00 18.46 16 15 C -0.45 -20.88 8.99 23.16 0.21 -20.67 16 16 H 0.12 4.72 7.07 -2.91 -0.02 4.70 16 17 C 0.04 1.59 5.49 85.28 0.47 2.06 16 18 N -0.77 -37.68 11.92 21.84 0.26 -37.42 16 19 Si 1.00 32.85 29.56 68.60 2.03 34.88 16 20 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 21 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 22 H -0.25 -7.45 7.11 99.48 0.71 -6.74 16 23 N -0.52 -23.53 3.17 -548.31 -1.74 -25.27 16 24 C 0.10 3.33 10.67 127.77 1.36 4.69 16 25 C 0.46 21.73 6.64 179.06 1.19 22.92 16 26 S -0.74 -35.41 27.02 -56.49 -1.53 -36.94 16 27 H 0.03 1.38 6.09 -2.39 -0.01 1.36 16 28 H 0.07 2.32 6.42 -2.39 -0.02 2.30 16 29 H 0.04 1.40 7.53 -2.38 -0.02 1.38 16 30 H 0.08 2.06 7.80 -2.39 -0.02 2.04 16 31 H 0.05 1.25 8.05 -2.39 -0.02 1.23 16 32 H 0.06 1.55 6.55 -2.39 -0.02 1.53 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 39 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 1.70 8.12 -2.38 -0.02 1.68 16 42 H 0.05 1.69 7.77 -2.39 -0.02 1.67 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.11 3.99 7.86 -2.39 -0.02 3.97 16 45 H 0.07 2.83 7.59 -2.39 -0.02 2.81 16 46 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 47 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 48 H 0.09 3.10 7.61 -2.39 -0.02 3.08 16 49 H 0.11 3.17 7.26 -2.39 -0.02 3.15 16 Total: -1.00 -63.71 392.98 -1.34 -65.05 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.93 Total: 32.41 kcal Atomic # 6 Polarization: 36.12 SS G_CDS: 9.13 Total: 45.24 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -11.89 Total: -140.64 kcal Atomic # 14 Polarization: 32.85 SS G_CDS: 2.03 Total: 34.88 kcal Atomic # 16 Polarization: -35.41 SS G_CDS: -1.53 Total: -36.94 kcal Total: -63.71 -1.34 -65.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.787 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds