Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00051 * 2 1 4 4 C 1.46896 * 110.99740 * 123.94991 * 2 1 3 5 5 C 1.52999 * 109.47166 * 164.12064 * 4 2 1 6 6 C 1.53124 * 109.52658 * 176.53265 * 5 4 2 7 7 C 1.53034 * 109.27875 * 177.56030 * 6 5 4 8 8 N 1.46846 * 109.52166 * 300.81829 * 7 6 5 9 9 C 1.46909 * 111.00086 * 185.83975 * 8 7 6 10 10 N 1.46499 * 109.47064 * 169.99773 * 9 8 7 11 11 N 1.40160 * 126.14660 * 269.69191 * 10 9 8 12 12 C 1.32240 * 107.75562 * 179.82987 * 11 10 9 13 13 C 1.40117 * 125.92695 * 180.15742 * 12 11 10 14 14 H 1.08007 * 120.00017 * 174.56939 * 13 12 11 15 15 C 1.40036 * 120.00242 * 354.57113 * 13 12 11 16 16 N 1.30803 * 119.99477 * 6.15441 * 15 13 12 17 17 Si 1.86802 * 120.00355 * 186.16167 * 15 13 12 18 18 H 1.48499 * 109.47026 * 94.96955 * 17 15 13 19 19 H 1.48499 * 109.46732 * 214.97200 * 17 15 13 20 20 H 1.48503 * 109.46761 * 334.97051 * 17 15 13 21 21 N 1.38507 * 108.14852 * 0.43135 * 12 11 10 22 22 C 1.46497 * 125.83410 * 179.72393 * 21 12 11 23 23 C 1.34728 * 108.32447 * 359.72503 * 21 12 11 24 24 S 1.71204 * 125.96873 * 180.02562 * 23 21 12 25 25 C 1.46845 * 111.20091 * 61.74610 * 8 7 6 26 26 C 1.53040 * 109.51969 * 298.25877 * 25 8 7 27 27 H 1.08997 * 109.47434 * 300.57332 * 1 2 3 28 28 H 1.08999 * 109.46853 * 60.57309 * 1 2 3 29 29 H 1.08999 * 109.47235 * 180.56970 * 1 2 3 30 30 H 1.08994 * 109.47156 * 183.95531 * 3 2 1 31 31 H 1.09003 * 109.46496 * 303.95051 * 3 2 1 32 32 H 1.08998 * 109.47275 * 63.94911 * 3 2 1 33 33 H 1.09004 * 109.47178 * 44.12166 * 4 2 1 34 34 H 1.09000 * 109.47419 * 284.11764 * 4 2 1 35 35 H 1.08998 * 109.52525 * 56.40758 * 5 4 2 36 36 H 1.09005 * 109.50032 * 57.61947 * 6 5 4 37 37 H 1.08999 * 109.53187 * 297.51870 * 6 5 4 38 38 H 1.09002 * 109.46146 * 180.80674 * 7 6 5 39 39 H 1.08992 * 109.45668 * 60.83018 * 7 6 5 40 40 H 1.08998 * 109.46986 * 290.00339 * 9 8 7 41 41 H 1.09007 * 109.46426 * 50.00357 * 9 8 7 42 42 H 0.97006 * 119.99440 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.47125 * 269.97223 * 22 21 12 44 44 H 1.08993 * 109.47341 * 29.97765 * 22 21 12 45 45 H 1.08999 * 109.46883 * 149.98010 * 22 21 12 46 46 H 1.09003 * 109.46138 * 58.27108 * 25 8 7 47 47 H 1.09001 * 109.46864 * 178.23799 * 25 8 7 48 48 H 1.08999 * 109.50009 * 299.23105 * 26 25 8 49 49 H 1.09009 * 109.53033 * 179.13954 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 3.4734 -1.0816 0.8998 6 6 4.0456 -1.8043 2.1225 7 6 5.5069 -2.1712 1.8545 8 7 5.5864 -3.0364 0.6706 9 6 6.9577 -3.5212 0.4639 10 7 6.9579 -4.5599 -0.5692 11 7 6.8043 -5.9368 -0.3573 12 6 6.8575 -6.5346 -1.5357 13 6 6.7423 -7.9121 -1.7648 14 1 6.7119 -8.2908 -2.7758 15 6 6.6665 -8.7979 -0.6828 16 7 6.5819 -8.3341 0.5373 17 14 6.6866 -10.6417 -0.9820 18 1 8.0750 -11.1503 -0.8449 19 1 5.8126 -11.3140 0.0127 20 1 6.1880 -10.9264 -2.3515 21 7 7.0530 -5.5634 -2.5037 22 6 7.1750 -5.8006 -3.9442 23 6 7.1118 -4.3634 -1.8940 24 16 7.3411 -2.8530 -2.6668 25 6 5.0864 -2.3468 -0.5256 26 6 3.6125 -1.9850 -0.3286 27 1 -0.3634 0.5227 0.8848 28 1 -0.3633 0.5049 -0.8951 29 1 -0.3633 -1.0276 0.0102 30 1 3.0827 1.3432 -0.0709 31 1 1.5898 1.9162 -0.8525 32 1 1.7043 1.8724 0.9232 33 1 1.4368 -1.6965 1.2387 34 1 1.8915 -0.1788 2.0501 35 1 4.0220 -0.1542 0.7351 36 1 3.4712 -2.7114 2.3108 37 1 3.9883 -1.1500 2.9924 38 1 5.9131 -2.6987 2.7176 39 1 6.0832 -1.2628 1.6798 40 1 7.5919 -2.6933 0.1471 41 1 7.3406 -3.9362 1.3964 42 1 6.5298 -8.9478 1.2868 43 1 8.2227 -5.9611 -4.1986 44 1 6.5955 -6.6822 -4.2177 45 1 6.7977 -4.9347 -4.4882 46 1 5.6648 -1.4375 -0.6891 47 1 5.1871 -3.0016 -1.3912 48 1 3.0313 -2.8949 -0.1789 49 1 3.2452 -1.4596 -1.2103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794632253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = 86.898217 kcal Electronic energy + Delta-G solvation = -28356.577701 eV Core-core repulsion = 24674.314821 eV Total energy + Delta-G solvation = -3682.262880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.88905 -39.14123 -37.27355 -34.83467 -33.95451 -32.89607 -30.74561 -30.35019 -28.45067 -27.72094 -26.78018 -26.55284 -24.51973 -23.07406 -22.59460 -21.36639 -20.90497 -20.68645 -19.38558 -17.74580 -16.66970 -16.20377 -15.73165 -15.55381 -15.38534 -15.11797 -14.89566 -14.79384 -14.62300 -14.28165 -13.81323 -13.52893 -13.38034 -12.92062 -12.66700 -12.52493 -12.22770 -12.20517 -12.17118 -11.92513 -11.82516 -11.79002 -11.58628 -11.49902 -11.30401 -11.03919 -10.86071 -10.62800 -10.51922 -10.40239 -10.16475 -10.11174 -9.91010 -9.51563 -9.16743 -8.84181 -8.42940 -7.98847 -7.02016 -6.77166 -6.61344 -5.10887 2.32938 2.57814 2.79898 2.92692 2.96831 3.37133 3.55887 3.66764 3.83826 4.07975 4.35636 4.77721 4.86004 4.94750 4.99667 5.07627 5.18424 5.23066 5.35285 5.37283 5.46490 5.53558 5.58076 5.59947 5.63948 5.71053 5.71586 5.76068 5.81951 5.86639 5.89577 5.98940 6.10375 6.11290 6.20650 6.26042 6.35467 6.47155 6.58469 6.69522 6.74274 6.83334 6.92489 6.94844 7.02192 7.30645 7.41438 7.62774 7.82588 8.25910 8.37797 9.17372 9.95662 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.003151 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.647030 B = 8885.243005 C = 9609.639723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.024 3.976 4 C 0.061 3.939 5 C -0.082 4.082 6 C -0.108 4.108 7 C 0.066 3.934 8 N -0.547 5.547 9 C 0.325 3.675 10 N -0.368 5.368 11 N -0.329 5.329 12 C 0.372 3.628 13 C -0.439 4.439 14 H 0.097 0.903 15 C 0.076 3.924 16 N -0.735 5.735 17 Si 0.928 3.072 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.514 5.514 22 C 0.100 3.900 23 C 0.464 3.536 24 S -0.714 6.714 25 C 0.058 3.942 26 C -0.097 4.097 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.285 0.715 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.041 0.959 47 H 0.085 0.915 48 H 0.060 0.940 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 7.889 3.402 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.125 4.125 4 C -0.066 4.066 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.063 4.063 8 N -0.274 5.274 9 C 0.113 3.887 10 N -0.154 5.154 11 N -0.161 5.161 12 C 0.123 3.877 13 C -0.481 4.481 14 H 0.115 0.885 15 C -0.150 4.150 16 N -0.359 5.359 17 Si 0.751 3.249 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.183 1.183 21 N -0.215 5.215 22 C -0.043 4.043 23 C 0.094 3.906 24 S -0.590 6.590 25 C -0.070 4.070 26 C -0.135 4.135 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.373 8.007 3.941 11.577 hybrid contribution 0.176 -0.455 0.156 0.513 sum -7.197 7.552 4.097 11.208 Atomic orbital electron populations 1.22376 0.87570 1.02029 1.00310 1.61906 1.07473 1.13780 1.43581 1.22418 1.01318 0.88711 1.00006 1.22209 0.96228 0.97637 0.90558 1.21208 0.94182 0.98741 0.96013 1.21573 0.95726 1.00406 0.96901 1.21896 0.96816 0.94703 0.92856 1.61838 1.21364 1.39455 1.04775 1.21652 0.90163 0.87313 0.89539 1.49148 1.54738 1.08224 1.03244 1.79432 1.39786 0.81464 1.15368 1.21340 0.93572 0.91402 0.81415 1.18340 1.48362 0.85847 0.95546 0.88495 1.25834 0.92940 1.02059 0.94183 1.69899 1.29041 1.37640 0.99354 0.85960 0.79213 0.80026 0.79686 1.19198 1.19797 1.18283 1.45985 1.61100 1.05150 1.09243 1.21752 1.02634 1.03298 0.76602 1.22918 0.90365 0.90991 0.86337 1.92743 1.80371 1.11823 1.74054 1.22411 0.94610 0.97749 0.92203 1.21503 0.95969 0.98646 0.97373 0.96044 0.91486 0.91384 0.91014 0.91596 0.96003 0.90825 0.95081 0.91573 0.90976 0.91935 0.90726 0.94869 0.90961 0.88095 0.90394 0.91482 0.89794 0.89232 0.94028 0.89666 0.92151 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.58 60.06 0.58 0.81 16 2 N -0.54 -6.12 4.43 -251.27 -1.11 -7.23 16 3 C 0.02 0.23 9.38 60.07 0.56 0.80 16 4 C 0.06 0.69 4.38 -3.83 -0.02 0.67 16 5 C -0.08 -1.04 2.25 -90.50 -0.20 -1.25 16 6 C -0.11 -1.32 5.38 -26.65 -0.14 -1.46 16 7 C 0.07 0.92 5.46 -3.84 -0.02 0.90 16 8 N -0.55 -9.85 4.80 -238.57 -1.14 -10.99 16 9 C 0.33 6.38 5.98 -63.31 -0.38 6.00 16 10 N -0.37 -8.62 3.57 -65.05 -0.23 -8.86 16 11 N -0.33 -8.53 10.79 31.21 0.34 -8.19 16 12 C 0.37 9.26 7.50 -155.27 -1.16 8.09 16 13 C -0.44 -10.33 8.99 -38.20 -0.34 -10.67 16 14 H 0.10 2.05 7.08 -52.48 -0.37 1.68 16 15 C 0.08 1.74 5.49 -17.32 -0.10 1.64 16 16 N -0.74 -17.93 11.93 55.55 0.66 -17.27 16 17 Si 0.93 16.73 29.57 -169.99 -5.03 11.70 16 18 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 21 N -0.51 -11.75 3.17 -124.66 -0.39 -12.14 16 22 C 0.10 1.81 10.66 59.85 0.64 2.45 16 23 C 0.46 11.01 6.58 -86.94 -0.57 10.44 16 24 S -0.71 -17.18 27.20 -107.50 -2.92 -20.10 16 25 C 0.06 1.07 4.31 -3.83 -0.02 1.06 16 26 C -0.10 -1.53 5.22 -26.65 -0.14 -1.67 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.63 7.99 -51.93 -0.41 0.21 16 30 H 0.07 0.74 6.64 -51.93 -0.34 0.40 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.02 0.20 8.11 -51.93 -0.42 -0.23 16 33 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 34 H 0.03 0.32 8.03 -51.93 -0.42 -0.10 16 35 H 0.07 0.85 6.64 -51.93 -0.34 0.50 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.41 7.63 -51.93 -0.40 1.01 16 41 H 0.10 1.86 7.99 -51.93 -0.41 1.45 16 42 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.34 7.27 -51.93 -0.38 0.96 16 45 H 0.09 1.59 7.61 -51.93 -0.40 1.20 16 46 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 47 H 0.09 1.91 5.13 -51.93 -0.27 1.65 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.20 7.79 -51.92 -0.40 0.79 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -29.79 393.27 -13.56 -43.35 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.33 Total: 5.99 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: -1.32 Total: 17.82 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -1.88 Total: -64.68 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Atomic # 16 Polarization: -17.18 SS G_CDS: -2.92 Total: -20.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.79 -13.56 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794632253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.244 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds