Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47183 * 2 1 4 4 C 1.46892 * 111.00381 * 66.04151 * 3 2 1 5 5 C 1.46895 * 111.00210 * 190.00281 * 3 2 1 6 6 C 1.52992 * 109.47530 * 169.99721 * 5 3 2 7 7 H 1.09005 * 110.87616 * 57.38863 * 6 5 3 8 8 C 1.55137 * 110.99124 * 293.54456 * 6 5 3 9 9 C 1.54314 * 103.02192 * 206.25360 * 8 6 5 10 10 N 1.47440 * 107.23491 * 22.28460 * 9 8 6 11 11 C 1.46903 * 111.00504 * 123.25789 * 10 9 8 12 12 N 1.46496 * 109.47129 * 69.87367 * 11 10 9 13 13 N 1.40162 * 126.14409 * 90.02607 * 12 11 10 14 14 C 1.32247 * 107.75873 * 179.97438 * 13 12 11 15 15 C 1.40114 * 125.92728 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00253 * 180.02562 * 15 14 13 17 17 C 1.40037 * 120.00057 * 359.74607 * 15 14 13 18 18 N 1.30804 * 120.00086 * 0.27940 * 17 15 14 19 19 Si 1.86798 * 120.00322 * 180.27396 * 17 15 14 20 20 H 1.48504 * 109.46986 * 60.00430 * 19 17 15 21 21 H 1.48498 * 109.47594 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47239 * 300.00700 * 19 17 15 23 23 N 1.38502 * 108.14353 * 0.26613 * 14 13 12 24 24 C 1.46499 * 125.83061 * 179.73664 * 23 14 13 25 25 C 1.34731 * 108.32964 * 359.56217 * 23 14 13 26 26 S 1.71196 * 125.96932 * 180.16638 * 25 23 14 27 27 C 1.47850 * 108.56363 * 0.98676 * 10 9 8 28 28 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47143 * 299.99934 * 1 2 3 30 30 H 1.08997 * 109.46990 * 60.00293 * 1 2 3 31 31 H 1.09001 * 109.47224 * 239.99522 * 2 1 3 32 32 H 1.09006 * 109.46870 * 119.99880 * 2 1 3 33 33 H 1.09001 * 109.47626 * 183.95642 * 4 3 2 34 34 H 1.09000 * 109.47616 * 303.96020 * 4 3 2 35 35 H 1.09008 * 109.47257 * 63.95589 * 4 3 2 36 36 H 1.09007 * 109.47300 * 49.99201 * 5 3 2 37 37 H 1.09002 * 109.46803 * 289.99643 * 5 3 2 38 38 H 1.09001 * 110.70897 * 87.87042 * 8 6 5 39 39 H 1.09002 * 110.70624 * 324.63455 * 8 6 5 40 40 H 1.09004 * 109.89096 * 262.87459 * 9 8 6 41 41 H 1.09002 * 109.88914 * 141.68915 * 9 8 6 42 42 H 1.08998 * 109.46929 * 309.87636 * 11 10 9 43 43 H 1.08996 * 109.46809 * 189.87854 * 11 10 9 44 44 H 0.96996 * 120.00409 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47154 * 90.00197 * 24 23 14 46 46 H 1.09007 * 109.47001 * 209.99315 * 24 23 14 47 47 H 1.08996 * 109.47433 * 329.99731 * 24 23 14 48 48 H 1.09001 * 110.36859 * 94.73939 * 27 10 9 49 49 H 1.09001 * 110.37041 * 217.07337 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4684 1.4311 -0.2382 6 6 3.8998 2.8791 -0.4792 7 1 3.6250 3.5119 0.3647 8 6 3.2998 3.4249 -1.8016 9 6 4.3078 4.5174 -2.2159 10 7 5.5863 4.2074 -1.5502 11 6 6.6710 4.0695 -2.5312 12 7 6.9788 5.3812 -3.1064 13 7 7.9150 6.3007 -2.6139 14 6 7.8981 7.3580 -3.4081 15 6 8.6884 8.5062 -3.2653 16 1 8.5957 9.3170 -3.9727 17 6 9.5942 8.6050 -2.2019 18 7 9.7065 7.6230 -1.3450 19 14 10.6423 10.1389 -2.0070 20 1 9.7611 11.3223 -1.8386 21 1 11.5126 9.9953 -0.8124 22 1 11.4865 10.3183 -3.2153 23 7 6.9599 7.1357 -4.4023 24 6 6.6228 8.0621 -5.4860 25 6 6.4130 5.9204 -4.2047 26 16 5.2052 5.1915 -5.1747 27 6 5.4196 2.9648 -0.7664 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.9823 3.1099 1.1986 34 1 0.5919 2.0180 1.4051 35 1 2.1769 1.5792 2.0859 36 1 3.7122 0.8289 -1.1135 37 1 3.9925 1.0360 0.6321 38 1 2.3138 3.8561 -1.6284 39 1 3.2511 2.6395 -2.5559 40 1 3.9490 5.4948 -1.8930 41 1 4.4412 4.5079 -3.2977 42 1 6.3596 3.3892 -3.3239 43 1 7.5580 3.6715 -2.0385 44 1 10.3342 7.6912 -0.6087 45 1 7.2651 7.8660 -6.3446 46 1 5.5804 7.9221 -5.7726 47 1 6.7720 9.0873 -5.1473 48 1 5.7451 2.1026 -1.3484 49 1 5.9793 3.0270 0.1669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794636414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = 92.165944 kcal Electronic energy + Delta-G solvation = -27882.223453 eV Core-core repulsion = 24200.188999 eV Total energy + Delta-G solvation = -3682.034454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.90087 -39.17693 -37.47303 -34.70151 -33.94795 -32.47563 -30.86736 -29.98065 -28.98544 -27.68275 -26.81706 -26.55002 -24.69275 -23.63953 -21.77748 -21.22776 -20.92805 -20.36867 -19.77647 -17.76397 -16.60495 -16.43187 -15.97727 -15.75025 -15.64026 -15.38323 -14.92067 -14.73225 -14.59240 -14.08116 -13.87071 -13.53236 -13.13440 -12.87432 -12.75966 -12.61043 -12.27604 -12.16587 -12.05051 -11.97159 -11.82152 -11.71728 -11.56477 -11.44830 -11.18598 -11.11091 -10.89643 -10.70948 -10.66397 -10.59970 -10.56325 -10.28042 -10.01551 -9.53957 -9.21118 -8.86074 -8.46366 -8.05817 -7.02598 -6.83052 -6.51977 -5.12889 2.29488 2.54343 2.80875 2.91556 2.93925 3.32383 3.54231 3.65234 3.71372 4.06793 4.38836 4.73265 4.85112 4.87773 4.90311 4.97393 5.02660 5.20551 5.27505 5.28822 5.33400 5.42090 5.53417 5.54074 5.60112 5.62163 5.68947 5.69753 5.75837 5.81883 5.84326 5.93135 6.00903 6.07306 6.08638 6.20465 6.31531 6.37764 6.53803 6.70195 6.76449 6.81479 6.89829 6.92135 6.99663 7.26842 7.36813 7.60783 7.79109 8.23786 8.35865 9.15147 9.94772 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.002699 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.521633 B =10373.168367 C =11493.546179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.020 3.980 5 C 0.067 3.933 6 C -0.093 4.093 7 H 0.081 0.919 8 C -0.110 4.110 9 C -0.004 4.004 10 N -0.538 5.538 11 C 0.320 3.680 12 N -0.365 5.365 13 N -0.329 5.329 14 C 0.371 3.629 15 C -0.438 4.438 16 H 0.097 0.903 17 C 0.076 3.924 18 N -0.736 5.736 19 Si 0.929 3.071 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.262 1.262 23 N -0.513 5.513 24 C 0.099 3.901 25 C 0.462 3.538 26 S -0.707 6.707 27 C 0.058 3.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.286 0.714 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.046 0.954 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 -7.834 5.000 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.262 5.262 4 C -0.128 4.128 5 C -0.061 4.061 6 C -0.112 4.112 7 H 0.100 0.900 8 C -0.149 4.149 9 C -0.133 4.133 10 N -0.264 5.264 11 C 0.108 3.892 12 N -0.150 5.150 13 N -0.160 5.160 14 C 0.122 3.878 15 C -0.479 4.479 16 H 0.115 0.885 17 C -0.151 4.151 18 N -0.360 5.360 19 Si 0.752 3.248 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.186 1.186 23 N -0.213 5.213 24 C -0.044 4.044 25 C 0.092 3.908 26 S -0.580 6.580 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.065 0.935 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.907 -8.195 5.439 12.620 hybrid contribution 1.004 0.390 0.311 1.121 sum -6.903 -7.806 5.750 11.901 Atomic orbital electron populations 1.21802 0.94931 1.01357 1.02561 1.22081 0.96131 0.89006 1.00564 1.61957 1.13986 1.15482 1.34823 1.22472 1.01193 0.99718 0.89464 1.22075 0.86948 0.96743 1.00326 1.22303 0.94249 0.95334 0.99362 0.90045 1.22565 0.98898 0.98099 0.95343 1.23913 0.87431 0.97870 1.04041 1.63362 1.05541 1.33029 1.24475 1.21854 0.95391 0.79189 0.92812 1.49170 1.30448 1.16364 1.19066 1.79444 1.15054 0.99727 1.21783 1.21346 0.87989 0.95587 0.82866 1.18302 1.18331 0.99279 1.12030 0.88519 1.25841 0.96725 0.98322 0.94211 1.69872 1.27229 1.29740 1.09141 0.86016 0.79427 0.80449 0.78936 1.18629 1.19912 1.18645 1.45961 1.34337 1.14362 1.26658 1.21769 1.02813 0.92009 0.87769 1.22884 0.91875 0.86115 0.89951 1.92591 1.35626 1.72516 1.57310 1.22848 0.95839 0.90480 0.97888 0.92492 0.92742 0.91711 0.90850 0.95234 0.90954 0.91355 0.95905 0.90681 0.94869 0.91229 0.91686 0.92227 0.85798 0.90769 0.88196 0.90275 0.91475 0.89189 0.89709 0.93547 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.84 37.16 0.37 -0.80 16 2 C 0.05 0.44 5.68 -3.83 -0.02 0.42 16 3 N -0.54 -5.64 4.58 -242.92 -1.11 -6.75 16 4 C 0.02 0.19 9.14 60.06 0.55 0.74 16 5 C 0.07 0.73 4.40 -3.83 -0.02 0.71 16 6 C -0.09 -1.19 2.89 -88.49 -0.26 -1.45 16 7 H 0.08 1.09 6.54 -51.93 -0.34 0.75 16 8 C -0.11 -1.65 6.24 -24.91 -0.16 -1.81 16 9 C 0.00 -0.07 6.42 -2.84 -0.02 -0.09 16 10 N -0.54 -9.92 5.31 -235.15 -1.25 -11.17 16 11 C 0.32 6.31 5.69 -63.32 -0.36 5.95 16 12 N -0.37 -8.60 3.69 -65.06 -0.24 -8.85 16 13 N -0.33 -8.56 10.77 31.21 0.34 -8.22 16 14 C 0.37 9.25 7.50 -155.27 -1.16 8.09 16 15 C -0.44 -10.28 8.98 -38.20 -0.34 -10.62 16 16 H 0.10 2.02 7.12 -52.49 -0.37 1.65 16 17 C 0.08 1.72 5.50 -17.32 -0.10 1.63 16 18 N -0.74 -18.01 11.90 55.55 0.66 -17.35 16 19 Si 0.93 16.72 29.56 -169.99 -5.02 11.69 16 20 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 22 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 23 N -0.51 -11.69 3.17 -124.66 -0.39 -12.09 16 24 C 0.10 1.78 10.64 59.85 0.64 2.41 16 25 C 0.46 10.96 7.38 -86.93 -0.64 10.32 16 26 S -0.71 -16.76 26.33 -107.50 -2.83 -19.59 16 27 C 0.06 0.83 6.15 -2.30 -0.01 0.81 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.41 6.47 -51.93 -0.34 0.08 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 32 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 34 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 35 H 0.02 0.21 8.14 -51.92 -0.42 -0.22 16 36 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 37 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.98 8.01 -51.93 -0.42 0.57 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.12 2.61 3.38 -31.96 -0.11 2.50 16 42 H 0.07 1.44 7.46 -51.93 -0.39 1.05 16 43 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 44 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.58 7.62 -51.93 -0.40 1.19 16 47 H 0.08 1.34 7.32 -51.93 -0.38 0.96 16 48 H 0.05 0.60 7.70 -51.93 -0.40 0.20 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -29.56 392.91 -13.45 -43.01 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.98 Total: 7.08 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -1.54 Total: 16.32 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -2.00 Total: -64.43 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.02 Total: 11.69 kcal Atomic # 16 Polarization: -16.76 SS G_CDS: -2.83 Total: -19.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.56 -13.45 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.175 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds