Wall clock time and date at job start Sat Apr 11 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47183 * 2 1 4 4 C 1.46892 * 111.00381 * 66.04151 * 3 2 1 5 5 C 1.46895 * 111.00210 * 190.00281 * 3 2 1 6 6 C 1.52992 * 109.47530 * 169.99721 * 5 3 2 7 7 H 1.09005 * 110.87616 * 57.38863 * 6 5 3 8 8 C 1.55137 * 110.99124 * 293.54456 * 6 5 3 9 9 C 1.54314 * 103.02192 * 206.25360 * 8 6 5 10 10 N 1.47440 * 107.23491 * 22.28460 * 9 8 6 11 11 C 1.46903 * 111.00504 * 123.25789 * 10 9 8 12 12 N 1.46496 * 109.47129 * 69.87367 * 11 10 9 13 13 N 1.40162 * 126.14409 * 90.02607 * 12 11 10 14 14 C 1.32247 * 107.75873 * 179.97438 * 13 12 11 15 15 C 1.40114 * 125.92728 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00253 * 180.02562 * 15 14 13 17 17 C 1.40037 * 120.00057 * 359.74607 * 15 14 13 18 18 N 1.30804 * 120.00086 * 0.27940 * 17 15 14 19 19 Si 1.86798 * 120.00322 * 180.27396 * 17 15 14 20 20 H 1.48504 * 109.46986 * 60.00430 * 19 17 15 21 21 H 1.48498 * 109.47594 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47239 * 300.00700 * 19 17 15 23 23 N 1.38502 * 108.14353 * 0.26613 * 14 13 12 24 24 C 1.46499 * 125.83061 * 179.73664 * 23 14 13 25 25 C 1.34731 * 108.32964 * 359.56217 * 23 14 13 26 26 S 1.71196 * 125.96932 * 180.16638 * 25 23 14 27 27 C 1.47850 * 108.56363 * 0.98676 * 10 9 8 28 28 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47143 * 299.99934 * 1 2 3 30 30 H 1.08997 * 109.46990 * 60.00293 * 1 2 3 31 31 H 1.09001 * 109.47224 * 239.99522 * 2 1 3 32 32 H 1.09006 * 109.46870 * 119.99880 * 2 1 3 33 33 H 1.09001 * 109.47626 * 183.95642 * 4 3 2 34 34 H 1.09000 * 109.47616 * 303.96020 * 4 3 2 35 35 H 1.09008 * 109.47257 * 63.95589 * 4 3 2 36 36 H 1.09007 * 109.47300 * 49.99201 * 5 3 2 37 37 H 1.09002 * 109.46803 * 289.99643 * 5 3 2 38 38 H 1.09001 * 110.70897 * 87.87042 * 8 6 5 39 39 H 1.09002 * 110.70624 * 324.63455 * 8 6 5 40 40 H 1.09004 * 109.89096 * 262.87459 * 9 8 6 41 41 H 1.09002 * 109.88914 * 141.68915 * 9 8 6 42 42 H 1.08998 * 109.46929 * 309.87636 * 11 10 9 43 43 H 1.08996 * 109.46809 * 189.87854 * 11 10 9 44 44 H 0.96996 * 120.00409 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47154 * 90.00197 * 24 23 14 46 46 H 1.09007 * 109.47001 * 209.99315 * 24 23 14 47 47 H 1.08996 * 109.47433 * 329.99731 * 24 23 14 48 48 H 1.09001 * 110.36859 * 94.73939 * 27 10 9 49 49 H 1.09001 * 110.37041 * 217.07337 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4684 1.4311 -0.2382 6 6 3.8998 2.8791 -0.4792 7 1 3.6250 3.5119 0.3647 8 6 3.2998 3.4249 -1.8016 9 6 4.3078 4.5174 -2.2159 10 7 5.5863 4.2074 -1.5502 11 6 6.6710 4.0695 -2.5312 12 7 6.9788 5.3812 -3.1064 13 7 7.9150 6.3007 -2.6139 14 6 7.8981 7.3580 -3.4081 15 6 8.6884 8.5062 -3.2653 16 1 8.5957 9.3170 -3.9727 17 6 9.5942 8.6050 -2.2019 18 7 9.7065 7.6230 -1.3450 19 14 10.6423 10.1389 -2.0070 20 1 9.7611 11.3223 -1.8386 21 1 11.5126 9.9953 -0.8124 22 1 11.4865 10.3183 -3.2153 23 7 6.9599 7.1357 -4.4023 24 6 6.6228 8.0621 -5.4860 25 6 6.4130 5.9204 -4.2047 26 16 5.2052 5.1915 -5.1747 27 6 5.4196 2.9648 -0.7664 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.9823 3.1099 1.1986 34 1 0.5919 2.0180 1.4051 35 1 2.1769 1.5792 2.0859 36 1 3.7122 0.8289 -1.1135 37 1 3.9925 1.0360 0.6321 38 1 2.3138 3.8561 -1.6284 39 1 3.2511 2.6395 -2.5559 40 1 3.9490 5.4948 -1.8930 41 1 4.4412 4.5079 -3.2977 42 1 6.3596 3.3892 -3.3239 43 1 7.5580 3.6715 -2.0385 44 1 10.3342 7.6912 -0.6087 45 1 7.2651 7.8660 -6.3446 46 1 5.5804 7.9221 -5.7726 47 1 6.7720 9.0873 -5.1473 48 1 5.7451 2.1026 -1.3484 49 1 5.9793 3.0270 0.1669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794636414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:37 Heat of formation + Delta-G solvation = 75.160821 kcal Electronic energy + Delta-G solvation = -27882.960850 eV Core-core repulsion = 24200.188999 eV Total energy + Delta-G solvation = -3682.771851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.66856 -40.37794 -38.45455 -36.30040 -35.66600 -33.74430 -32.31236 -31.24669 -30.13481 -29.15305 -28.29417 -27.74469 -26.12422 -24.70736 -23.47584 -22.71083 -22.05329 -21.70766 -20.90597 -19.50004 -18.29395 -17.58140 -17.52115 -17.42669 -16.62837 -16.45767 -16.38765 -16.27660 -15.98907 -15.18262 -15.01197 -14.73977 -14.31303 -14.25247 -13.98498 -13.83837 -13.59185 -13.47770 -13.37195 -13.16845 -12.98981 -12.79202 -12.75764 -12.57506 -12.55263 -12.48126 -12.24131 -12.04016 -11.91580 -11.84644 -11.68513 -11.60491 -11.45129 -11.35396 -10.90023 -10.64535 -9.53445 -9.23572 -8.78013 -8.66212 -8.33309 -6.96979 0.49927 0.76643 1.30160 1.44634 1.58909 1.62830 1.86613 2.12517 2.39843 2.87365 3.00633 3.10274 3.55580 3.77519 3.79619 3.86130 4.04386 4.12484 4.14575 4.29264 4.38345 4.39717 4.44680 4.46146 4.49600 4.54439 4.64822 4.66130 4.69151 4.70108 4.79468 4.87749 4.92283 4.94621 5.03089 5.05992 5.09818 5.14309 5.16728 5.23960 5.26713 5.37770 5.41518 5.72986 5.85511 5.94727 6.10762 6.16647 6.18836 6.47879 6.56792 7.32498 8.25434 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.002699 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.521633 B =10373.168367 C =11493.546179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.553 5.553 4 C 0.021 3.979 5 C 0.075 3.925 6 C -0.078 4.078 7 H 0.077 0.923 8 C -0.098 4.098 9 C 0.002 3.998 10 N -0.554 5.554 11 C 0.318 3.682 12 N -0.367 5.367 13 N -0.365 5.365 14 C 0.350 3.650 15 C -0.451 4.451 16 H 0.120 0.880 17 C 0.033 3.967 18 N -0.776 5.776 19 Si 1.007 2.993 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.252 1.252 23 N -0.515 5.515 24 C 0.094 3.906 25 C 0.451 3.549 26 S -0.722 6.722 27 C 0.057 3.943 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.292 0.708 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 -7.666 5.566 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 N -0.277 5.277 4 C -0.127 4.127 5 C -0.053 4.053 6 C -0.098 4.098 7 H 0.096 0.904 8 C -0.136 4.136 9 C -0.127 4.127 10 N -0.280 5.280 11 C 0.107 3.893 12 N -0.153 5.153 13 N -0.198 5.198 14 C 0.102 3.898 15 C -0.493 4.493 16 H 0.137 0.863 17 C -0.190 4.190 18 N -0.400 5.400 19 Si 0.826 3.174 20 H -0.178 1.178 21 H -0.197 1.197 22 H -0.176 1.176 23 N -0.216 5.216 24 C -0.047 4.047 25 C 0.079 3.921 26 S -0.596 6.596 27 C -0.071 4.071 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.125 0.875 48 H 0.082 0.918 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.680 -8.048 5.994 12.636 hybrid contribution 0.911 0.331 0.148 0.981 sum -6.769 -7.717 6.142 11.962 Atomic orbital electron populations 1.21774 0.94234 1.02181 1.02095 1.22130 0.96685 0.88059 1.00945 1.61946 1.13624 1.16693 1.35470 1.22460 1.01839 0.99067 0.89338 1.21960 0.87537 0.94857 1.00992 1.22190 0.92926 0.96834 0.97846 0.90446 1.22423 0.97882 0.96850 0.96481 1.23680 0.88664 0.97764 1.02619 1.63314 1.04991 1.35535 1.24190 1.22004 0.96162 0.77982 0.93183 1.49484 1.29930 1.16903 1.18972 1.79337 1.16431 1.00854 1.23145 1.21748 0.88719 0.95994 0.83388 1.18886 1.18162 0.99387 1.12841 0.86268 1.26928 0.97418 1.01400 0.93217 1.69980 1.28105 1.32064 1.09878 0.84854 0.77469 0.76020 0.79088 1.17785 1.19747 1.17572 1.46255 1.33691 1.14502 1.27137 1.22057 1.03133 0.92309 0.87243 1.22975 0.92159 0.86726 0.90226 1.92493 1.36375 1.73045 1.57685 1.22981 0.97020 0.89321 0.97729 0.91063 0.92518 0.92815 0.90746 0.94514 0.91984 0.90493 0.95271 0.90359 0.93689 0.91200 0.91581 0.95168 0.87845 0.90617 0.87488 0.89748 0.89867 0.89187 0.87528 0.91821 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.84 71.98 0.71 -1.31 16 2 C 0.05 0.78 5.68 86.30 0.49 1.27 16 3 N -0.55 -10.68 4.58 -922.48 -4.23 -14.91 16 4 C 0.02 0.37 9.14 127.69 1.17 1.53 16 5 C 0.07 1.48 4.40 86.30 0.38 1.86 16 6 C -0.08 -1.94 2.89 -9.41 -0.03 -1.97 16 7 H 0.08 2.01 6.54 -2.38 -0.02 1.99 16 8 C -0.10 -2.91 6.24 31.77 0.20 -2.72 16 9 C 0.00 0.07 6.42 86.65 0.56 0.63 16 10 N -0.55 -20.75 5.31 -897.87 -4.77 -25.52 16 11 C 0.32 12.82 5.69 170.81 0.97 13.79 16 12 N -0.37 -17.73 3.69 -359.74 -1.33 -19.06 16 13 N -0.37 -19.45 10.77 -55.17 -0.59 -20.04 16 14 C 0.35 17.61 7.50 133.52 1.00 18.61 16 15 C -0.45 -20.90 8.98 23.16 0.21 -20.70 16 16 H 0.12 4.77 7.12 -2.91 -0.02 4.75 16 17 C 0.03 1.49 5.50 85.28 0.47 1.96 16 18 N -0.78 -38.18 11.90 21.84 0.26 -37.92 16 19 Si 1.01 32.94 29.56 68.60 2.03 34.97 16 20 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 21 H -0.27 -8.77 7.11 99.48 0.71 -8.07 16 22 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 23 N -0.52 -23.67 3.17 -548.30 -1.74 -25.41 16 24 C 0.09 3.29 10.64 127.77 1.36 4.65 16 25 C 0.45 21.79 7.38 179.06 1.32 23.11 16 26 S -0.72 -34.73 26.33 -56.49 -1.49 -36.21 16 27 C 0.06 1.58 6.15 86.77 0.53 2.11 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.76 6.47 -2.39 -0.02 0.74 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.16 7.93 -2.39 -0.02 1.14 16 32 H 0.04 0.53 8.12 -2.38 -0.02 0.52 16 33 H 0.06 1.21 6.44 -2.39 -0.02 1.19 16 34 H 0.08 1.20 6.30 -2.39 -0.02 1.19 16 35 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.08 1.52 7.90 -2.38 -0.02 1.50 16 37 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 4.48 3.38 -15.08 -0.05 4.43 16 42 H 0.08 2.99 7.46 -2.39 -0.02 2.97 16 43 H 0.11 4.07 8.07 -2.39 -0.02 4.05 16 44 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 45 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.09 3.14 7.62 -2.38 -0.02 3.12 16 47 H 0.11 3.21 7.32 -2.39 -0.02 3.19 16 48 H 0.06 1.55 7.70 -2.39 -0.02 1.54 16 49 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -64.52 392.91 -1.62 -66.15 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.90 Total: 35.13 kcal Atomic # 6 Polarization: 33.48 SS G_CDS: 9.34 Total: 42.82 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -12.40 Total: -142.85 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 2.03 Total: 34.97 kcal Atomic # 16 Polarization: -34.73 SS G_CDS: -1.49 Total: -36.21 kcal Total: -64.52 -1.62 -66.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.309 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds