Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46898 * 109.46787 * 2 1 4 4 C 1.46902 * 110.99922 * 83.82389 * 3 2 1 5 5 C 1.53000 * 109.47139 * 285.77829 * 4 3 2 6 6 C 1.46896 * 111.00178 * 207.77241 * 3 2 1 7 7 H 1.09004 * 110.76413 * 51.33104 * 6 3 2 8 8 C 1.55143 * 110.70952 * 288.13447 * 6 3 2 9 9 C 1.54907 * 101.65275 * 205.96054 * 8 6 3 10 10 N 1.47842 * 104.79770 * 37.06949 * 9 8 6 11 11 C 1.46899 * 111.00183 * 213.63641 * 10 9 8 12 12 N 1.46501 * 109.47060 * 290.84406 * 11 10 9 13 13 N 1.40160 * 126.14920 * 90.02021 * 12 11 10 14 14 C 1.32241 * 107.75960 * 179.97438 * 13 12 11 15 15 C 1.40121 * 125.92573 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99902 * 180.02562 * 15 14 13 17 17 C 1.40039 * 119.99758 * 0.02562 * 15 14 13 18 18 N 1.30796 * 120.00541 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99636 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47410 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47194 * 119.99826 * 19 17 15 22 22 H 1.48500 * 109.47310 * 239.99885 * 19 17 15 23 23 N 1.38492 * 108.14625 * 0.02562 * 14 13 12 24 24 C 1.46504 * 125.83465 * 179.97438 * 23 14 13 25 25 C 1.34733 * 108.33358 * 359.75559 * 23 14 13 26 26 S 1.71197 * 125.97800 * 180.24787 * 25 23 14 27 27 C 1.47449 * 108.56622 * 335.90325 * 10 9 8 28 28 H 1.08997 * 109.46812 * 291.54673 * 1 2 3 29 29 H 1.08998 * 109.47339 * 51.54852 * 1 2 3 30 30 H 1.09000 * 109.46955 * 171.54783 * 1 2 3 31 31 H 1.09002 * 109.46659 * 240.00495 * 2 1 3 32 32 H 1.09000 * 109.47375 * 120.00249 * 2 1 3 33 33 H 1.08998 * 109.47006 * 45.78038 * 4 3 2 34 34 H 1.09002 * 109.47715 * 165.77807 * 4 3 2 35 35 H 1.08995 * 109.47618 * 196.05427 * 5 4 3 36 36 H 1.09002 * 109.47439 * 316.06309 * 5 4 3 37 37 H 1.09004 * 109.46949 * 76.06048 * 5 4 3 38 38 H 1.09004 * 110.98472 * 324.04855 * 8 6 3 39 39 H 1.08996 * 110.99246 * 87.86797 * 8 6 3 40 40 H 1.08999 * 110.37524 * 278.23653 * 9 8 6 41 41 H 1.09002 * 110.36923 * 155.89828 * 9 8 6 42 42 H 1.09006 * 109.47132 * 50.83695 * 11 10 9 43 43 H 1.08996 * 109.47289 * 170.83734 * 11 10 9 44 44 H 0.96994 * 120.00445 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47153 * 89.99774 * 24 23 14 46 46 H 1.09005 * 109.46817 * 209.99851 * 24 23 14 47 47 H 1.08995 * 109.46982 * 329.99875 * 24 23 14 48 48 H 1.08996 * 109.89154 * 120.39820 * 27 10 9 49 49 H 1.08999 * 109.88461 * 241.42322 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0560 1.9305 1.3635 5 6 0.6311 2.2396 1.8273 6 6 3.3392 1.4770 -0.6390 7 1 3.3289 0.9969 -1.6176 8 6 4.4323 0.8518 0.2671 9 6 5.6978 1.6150 -0.1974 10 7 5.2310 2.9918 -0.4663 11 6 5.9758 3.5918 -1.5813 12 7 7.3598 3.8370 -1.1683 13 7 8.4317 2.9431 -1.2969 14 6 9.5102 3.5338 -0.8103 15 6 10.7953 2.9787 -0.7504 16 1 11.6109 3.5490 -0.3308 17 6 11.0222 1.6844 -1.2345 18 7 10.0344 0.9934 -1.7421 19 14 12.7354 0.9441 -1.1539 20 1 13.6686 1.9215 -0.5383 21 1 12.7021 -0.2927 -0.3326 22 1 13.1973 0.6146 -2.5263 23 7 9.1487 4.7958 -0.3691 24 6 10.0456 5.7808 0.2406 25 6 7.8323 4.9649 -0.6007 26 16 6.9185 6.3656 -0.2352 27 6 3.7863 2.9491 -0.7582 28 1 -0.3633 0.3774 0.9558 29 1 -0.3634 0.6390 -0.8048 30 1 -0.3633 -1.0165 -0.1511 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 2.5063 1.1997 2.0353 34 1 2.6478 2.8458 1.3731 35 1 0.6663 2.8943 2.6980 36 1 0.0863 2.7339 1.0229 37 1 0.1254 1.3108 2.0914 38 1 4.2243 1.0448 1.3196 39 1 4.5304 -0.2174 0.0797 40 1 6.0995 1.1662 -1.1058 41 1 6.4506 1.6167 0.5910 42 1 5.9660 2.9113 -2.4328 43 1 5.5086 4.5350 -1.8645 44 1 10.1915 0.0968 -2.0771 45 1 10.4773 6.4100 -0.5378 46 1 9.4834 6.4009 0.9389 47 1 10.8434 5.2644 0.7743 48 1 3.2441 3.5608 -0.0372 49 1 3.6012 3.3149 -1.7681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794636732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = 101.338255 kcal Electronic energy + Delta-G solvation = -28369.546706 eV Core-core repulsion = 24687.909993 eV Total energy + Delta-G solvation = -3681.636712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86101 -39.74191 -37.01019 -34.48750 -33.92525 -31.84016 -31.29006 -30.48293 -29.47015 -28.00838 -26.63590 -26.55112 -24.30319 -23.13818 -22.21203 -21.68595 -20.92021 -20.48600 -19.57962 -17.74934 -16.92717 -16.54517 -15.95209 -15.68872 -15.57067 -15.15711 -14.90857 -14.74935 -14.52931 -13.90042 -13.73126 -13.35532 -13.19551 -12.92091 -12.77817 -12.65607 -12.33259 -12.27110 -12.08279 -11.82289 -11.81227 -11.69092 -11.56824 -11.54529 -11.30325 -11.15802 -11.05894 -10.84680 -10.60281 -10.57406 -10.49023 -10.31123 -10.09466 -9.54126 -9.21865 -8.89923 -8.38748 -8.04881 -7.07786 -6.72135 -6.62086 -5.15789 2.36135 2.63175 2.74289 2.88918 2.93623 3.39365 3.51445 3.62575 3.72974 4.10432 4.33422 4.68661 4.74150 4.82139 4.84164 5.00372 5.10123 5.18294 5.22070 5.27753 5.39397 5.43569 5.48960 5.50826 5.56294 5.63723 5.66371 5.69677 5.76834 5.86487 5.87030 5.92097 5.96777 6.10485 6.11225 6.14457 6.21221 6.26709 6.27652 6.39925 6.58092 6.78561 6.97901 7.01245 7.04431 7.13857 7.20137 7.60762 7.78660 8.22850 8.33857 9.15050 9.89647 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003273 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.119676 B = 8551.876454 C =10226.452104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.052 3.948 3 N -0.525 5.525 4 C 0.042 3.958 5 C -0.150 4.150 6 C 0.066 3.934 7 H 0.089 0.911 8 C -0.162 4.162 9 C 0.058 3.942 10 N -0.535 5.535 11 C 0.324 3.676 12 N -0.377 5.377 13 N -0.343 5.343 14 C 0.375 3.625 15 C -0.437 4.437 16 H 0.097 0.903 17 C 0.077 3.923 18 N -0.739 5.739 19 Si 0.927 3.073 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.517 5.517 24 C 0.101 3.899 25 C 0.480 3.520 26 S -0.707 6.707 27 C 0.059 3.941 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.284 0.716 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -5.911 2.120 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.076 4.076 3 N -0.249 5.249 4 C -0.085 4.085 5 C -0.208 4.208 6 C -0.044 4.044 7 H 0.107 0.893 8 C -0.202 4.202 9 C -0.069 4.069 10 N -0.261 5.261 11 C 0.112 3.888 12 N -0.163 5.163 13 N -0.174 5.174 14 C 0.126 3.874 15 C -0.479 4.479 16 H 0.115 0.885 17 C -0.149 4.149 18 N -0.363 5.363 19 Si 0.751 3.249 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.219 5.219 24 C -0.042 4.042 25 C 0.112 3.888 26 S -0.583 6.583 27 C -0.069 4.069 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.108 0.892 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.682 -5.577 1.902 12.199 hybrid contribution 2.107 -1.507 -0.069 2.591 sum -8.575 -7.084 1.834 11.273 Atomic orbital electron populations 1.22058 0.95068 1.01101 1.03012 1.22083 0.96165 0.88684 1.00683 1.62154 1.24247 1.19486 1.19003 1.22272 0.97760 1.00356 0.88160 1.22010 0.96525 1.01203 1.01034 1.23035 0.87099 0.96632 0.97617 0.89319 1.23416 0.96276 0.99686 1.00835 1.22862 0.96117 0.86602 1.01351 1.63452 1.02726 1.20019 1.39924 1.21899 0.76177 1.00720 0.90051 1.49084 1.09178 1.10499 1.47537 1.79328 0.90486 1.10705 1.36911 1.21274 0.95811 0.79253 0.91108 1.18388 0.90805 0.99853 1.38828 0.88478 1.25825 0.99712 0.96271 0.93110 1.69877 1.32247 1.10033 1.24156 0.85927 0.80459 0.79470 0.79072 1.18162 1.19539 1.19520 1.45973 1.07154 1.16001 1.52739 1.21744 0.92936 0.90979 0.98578 1.22860 0.85613 0.92068 0.88302 1.92703 1.64323 1.22558 1.78723 1.22727 0.87307 0.95428 1.01487 0.91767 0.91899 0.92995 0.91507 0.94485 0.94583 0.89663 0.92603 0.91585 0.92607 0.90531 0.91216 0.92428 0.90602 0.91791 0.87242 0.90520 0.91560 0.89212 0.89847 0.89195 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.57 37.16 0.36 -0.93 16 2 C 0.05 0.50 5.37 -3.82 -0.02 0.48 16 3 N -0.53 -5.80 4.43 -224.47 -0.99 -6.79 16 4 C 0.04 0.46 4.36 -3.82 -0.02 0.45 16 5 C -0.15 -1.40 8.81 37.16 0.33 -1.07 16 6 C 0.07 0.81 2.94 -65.89 -0.19 0.62 16 7 H 0.09 1.06 7.88 -51.93 -0.41 0.65 16 8 C -0.16 -2.18 6.05 -24.59 -0.15 -2.33 16 9 C 0.06 1.01 6.41 -2.30 -0.01 0.99 16 10 N -0.53 -9.40 5.31 -235.14 -1.25 -10.65 16 11 C 0.32 6.25 5.53 -63.31 -0.35 5.90 16 12 N -0.38 -8.72 3.56 -65.05 -0.23 -8.95 16 13 N -0.34 -8.56 10.71 31.21 0.33 -8.23 16 14 C 0.38 9.18 7.50 -155.28 -1.16 8.01 16 15 C -0.44 -10.09 8.98 -38.20 -0.34 -10.43 16 16 H 0.10 2.03 7.11 -52.49 -0.37 1.66 16 17 C 0.08 1.71 5.50 -17.32 -0.10 1.62 16 18 N -0.74 -17.44 11.90 55.55 0.66 -16.78 16 19 Si 0.93 16.43 29.56 -169.99 -5.02 11.40 16 20 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 23 N -0.52 -11.83 3.17 -124.65 -0.39 -12.23 16 24 C 0.10 1.83 10.64 59.85 0.64 2.46 16 25 C 0.48 11.57 7.84 -86.93 -0.68 10.89 16 26 S -0.71 -17.70 29.50 -107.50 -3.17 -20.87 16 27 C 0.06 0.83 6.27 -2.83 -0.02 0.81 16 28 H 0.06 0.52 4.84 -51.93 -0.25 0.27 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.63 7.65 -51.93 -0.40 0.24 16 32 H 0.04 0.36 7.59 -51.93 -0.39 -0.03 16 33 H 0.04 0.41 6.51 -51.93 -0.34 0.07 16 34 H 0.09 1.08 5.75 -51.93 -0.30 0.78 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.47 5.69 -51.93 -0.30 0.18 16 38 H 0.08 1.05 5.93 -51.93 -0.31 0.74 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.07 7.62 -51.93 -0.40 0.68 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.06 1.17 7.85 -51.93 -0.41 0.77 16 43 H 0.11 2.11 7.53 -51.93 -0.39 1.72 16 44 H 0.28 6.06 8.30 -40.82 -0.34 5.72 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.62 7.62 -51.93 -0.40 1.22 16 47 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 48 H 0.09 1.31 5.90 -51.93 -0.31 1.01 16 49 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -29.17 390.84 -13.73 -42.90 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.83 Total: 6.84 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: -1.73 Total: 17.46 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -1.87 Total: -63.62 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.02 Total: 11.40 kcal Atomic # 16 Polarization: -17.70 SS G_CDS: -3.17 Total: -20.87 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.17 -13.73 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.237 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds