Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47121 * 2 1 4 4 C 1.46895 * 111.00015 * 296.64879 * 3 2 1 5 5 C 1.53000 * 109.47441 * 293.95708 * 4 3 2 6 6 C 1.46904 * 110.99951 * 60.60858 * 3 2 1 7 7 H 1.08998 * 110.62414 * 294.16823 * 6 3 2 8 8 C 1.55135 * 110.70636 * 57.46698 * 6 3 2 9 9 C 1.54905 * 101.65531 * 154.03510 * 8 6 3 10 10 N 1.47847 * 104.79409 * 322.93213 * 9 8 6 11 11 C 1.46899 * 111.00481 * 146.36346 * 10 9 8 12 12 N 1.46495 * 109.47194 * 69.15281 * 11 10 9 13 13 N 1.40156 * 126.14483 * 90.02945 * 12 11 10 14 14 C 1.32244 * 107.75989 * 179.97438 * 13 12 11 15 15 C 1.40119 * 125.92666 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99967 * 179.97438 * 15 14 13 17 17 C 1.40034 * 120.00188 * 359.97438 * 15 14 13 18 18 N 1.30798 * 120.00014 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47342 * 59.99655 * 19 17 15 21 21 H 1.48500 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47226 * 299.99574 * 19 17 15 23 23 N 1.38498 * 108.14655 * 0.02562 * 14 13 12 24 24 C 1.46496 * 125.83736 * 179.97438 * 23 14 13 25 25 C 1.34731 * 108.32880 * 359.73535 * 23 14 13 26 26 S 1.71197 * 125.97316 * 180.26574 * 25 23 14 27 27 C 1.47444 * 108.56807 * 24.09160 * 10 9 8 28 28 H 1.08995 * 109.47348 * 303.85934 * 1 2 3 29 29 H 1.08994 * 109.47491 * 183.85372 * 1 2 3 30 30 H 1.09005 * 109.47036 * 63.85515 * 1 2 3 31 31 H 1.09006 * 109.46947 * 119.99882 * 2 1 3 32 32 H 1.08998 * 109.47349 * 239.99454 * 2 1 3 33 33 H 1.09008 * 109.46941 * 53.95873 * 4 3 2 34 34 H 1.08999 * 109.47027 * 173.95109 * 4 3 2 35 35 H 1.08999 * 109.47115 * 299.99903 * 5 4 3 36 36 H 1.09001 * 109.46785 * 59.99873 * 5 4 3 37 37 H 1.08998 * 109.46992 * 179.97438 * 5 4 3 38 38 H 1.09004 * 110.99037 * 272.12852 * 8 6 3 39 39 H 1.09006 * 110.99197 * 35.94337 * 8 6 3 40 40 H 1.08996 * 110.37627 * 204.09991 * 9 8 6 41 41 H 1.09004 * 110.46660 * 81.80095 * 9 8 6 42 42 H 1.09000 * 109.47630 * 189.15974 * 11 10 9 43 43 H 1.09003 * 109.46592 * 309.15625 * 11 10 9 44 44 H 0.96999 * 120.00140 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47410 * 89.99802 * 24 23 14 46 46 H 1.09001 * 109.47350 * 210.00099 * 24 23 14 47 47 H 1.09006 * 109.47036 * 329.99643 * 24 23 14 48 48 H 1.09000 * 109.88792 * 239.60599 * 27 10 9 49 49 H 1.08997 * 109.88960 * 118.41666 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6152 2.0864 -1.2257 5 6 2.3145 1.4530 -2.4302 6 6 1.5605 2.1057 1.1949 7 1 0.4768 2.2212 1.1809 8 6 2.0218 1.3783 2.4852 9 6 2.0664 2.5450 3.5032 10 7 2.5600 3.7035 2.7285 11 6 1.9544 4.9534 3.2068 12 7 2.4688 5.2654 4.5425 13 7 3.6069 6.0304 4.8322 14 6 3.7348 6.0811 6.1475 15 6 4.7469 6.7486 6.8499 16 1 4.7590 6.7275 7.9297 17 6 5.7428 7.4429 6.1520 18 7 5.7285 7.4679 4.8444 19 14 7.0925 8.3321 7.0885 20 1 7.8475 7.3561 7.9147 21 1 8.0161 8.9840 6.1257 22 1 6.4871 9.3628 7.9697 23 7 2.6955 5.3589 6.7101 24 6 2.4652 5.1621 8.1434 25 6 1.9295 4.8728 5.7140 26 16 0.5199 3.9198 5.9030 27 6 2.2544 3.4798 1.3035 28 1 -0.3634 0.5725 0.8533 29 1 -0.3634 -1.0253 0.0691 30 1 -0.3633 0.4529 -0.9226 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 0.5351 2.0076 -1.3498 34 1 1.8968 3.1368 -1.1530 35 1 3.3945 1.5318 -2.3061 36 1 2.0328 0.4026 -2.5028 37 1 2.0140 1.9732 -3.3397 38 1 1.2966 0.6232 2.7883 39 1 3.0100 0.9376 2.3530 40 1 2.7531 2.3125 4.3171 41 1 1.0695 2.7475 3.8949 42 1 2.2050 5.7639 2.5224 43 1 0.8714 4.8382 3.2523 44 1 6.4186 7.9486 4.3609 45 1 1.8306 5.9630 8.5228 46 1 1.9741 4.2024 8.3040 47 1 3.4196 5.1744 8.6698 48 1 3.1767 3.4765 0.7226 49 1 1.5875 4.2616 0.9401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794636734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = 96.350495 kcal Electronic energy + Delta-G solvation = -28336.726466 eV Core-core repulsion = 24654.873468 eV Total energy + Delta-G solvation = -3681.852998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89648 -39.60199 -37.19078 -34.48173 -33.91013 -31.93575 -31.32103 -30.19437 -29.36398 -27.79078 -26.68406 -26.47120 -24.43150 -24.00623 -21.78789 -21.48720 -20.92985 -20.35066 -19.30381 -17.81620 -16.91490 -16.59596 -16.07371 -15.70556 -15.58848 -15.18323 -14.84224 -14.69366 -14.49048 -13.93132 -13.61144 -13.34376 -13.26142 -13.23074 -12.80063 -12.64044 -12.26223 -12.24834 -11.98447 -11.96303 -11.81590 -11.69257 -11.54066 -11.40237 -11.36855 -11.10492 -10.85051 -10.74056 -10.68245 -10.63830 -10.56042 -10.46833 -10.05298 -9.53953 -9.21997 -8.87329 -8.38618 -8.05892 -7.01801 -6.81278 -6.60043 -5.12244 2.30352 2.55028 2.81605 2.92289 2.94729 3.32610 3.55040 3.65954 3.77355 4.08375 4.37171 4.61030 4.77735 4.86537 4.95991 5.01640 5.08352 5.15317 5.19268 5.23231 5.32997 5.39729 5.43984 5.52503 5.54295 5.63587 5.67721 5.80884 5.84204 5.85511 5.86165 5.92039 5.96892 6.05819 6.08405 6.10167 6.20481 6.26254 6.48611 6.53138 6.56183 6.82104 7.00147 7.00871 7.08663 7.19297 7.27845 7.59748 7.78753 8.24498 8.36629 9.15952 9.95659 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.003086 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.852539 B = 9072.450550 C =10480.256519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.524 5.524 4 C 0.043 3.957 5 C -0.147 4.147 6 C 0.063 3.937 7 H 0.052 0.948 8 C -0.116 4.116 9 C 0.032 3.968 10 N -0.536 5.536 11 C 0.320 3.680 12 N -0.367 5.367 13 N -0.329 5.329 14 C 0.371 3.629 15 C -0.438 4.438 16 H 0.097 0.903 17 C 0.076 3.924 18 N -0.735 5.735 19 Si 0.928 3.072 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.262 1.262 23 N -0.513 5.513 24 C 0.100 3.900 25 C 0.465 3.535 26 S -0.716 6.716 27 C 0.063 3.937 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.286 0.714 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 -7.039 -8.336 11.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.248 5.248 4 C -0.085 4.085 5 C -0.205 4.205 6 C -0.046 4.046 7 H 0.070 0.930 8 C -0.155 4.155 9 C -0.096 4.096 10 N -0.262 5.262 11 C 0.108 3.892 12 N -0.152 5.152 13 N -0.160 5.160 14 C 0.122 3.878 15 C -0.480 4.480 16 H 0.115 0.885 17 C -0.151 4.151 18 N -0.359 5.359 19 Si 0.752 3.248 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.187 1.187 23 N -0.214 5.214 24 C -0.043 4.043 25 C 0.095 3.905 26 S -0.591 6.591 27 C -0.065 4.065 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.412 -7.154 -9.356 12.022 hybrid contribution -0.662 0.654 0.868 1.273 sum -3.074 -6.500 -8.488 11.124 Atomic orbital electron populations 1.22429 0.98434 1.02304 1.02058 1.22189 0.92756 0.90305 1.02835 1.62316 1.59111 1.01995 1.01344 1.22142 0.97651 0.98747 0.89948 1.21783 1.01632 1.00506 0.96563 1.22867 0.96952 0.94436 0.90393 0.93024 1.22747 1.01825 0.97670 0.93210 1.23568 1.02340 0.88180 0.95505 1.63461 1.58076 1.02225 1.02433 1.21918 0.94770 0.92863 0.79669 1.49126 1.22051 1.39909 1.04162 1.79449 1.03179 1.23599 1.09785 1.21342 0.87729 0.90620 0.88074 1.18303 1.05979 1.29233 0.94482 0.88550 1.25833 0.98624 0.95550 0.95082 1.69869 1.29923 1.28847 1.07257 0.86019 0.79387 0.79714 0.79717 1.18641 1.19896 1.18675 1.45963 1.23417 1.44620 1.07415 1.21757 1.02659 1.03420 0.76466 1.22862 0.92708 0.91080 0.83839 1.92623 1.19376 1.53416 1.93715 1.22664 1.00182 0.94587 0.89103 0.92187 0.92212 0.92647 0.90436 0.90630 0.94680 0.90649 0.91776 0.92841 0.92545 0.91315 0.90305 0.91146 0.88827 0.88090 0.90901 0.90260 0.91516 0.89235 0.89736 0.89264 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.25 37.16 0.34 -1.43 16 2 C 0.05 0.46 5.60 -3.82 -0.02 0.44 16 3 N -0.52 -5.92 4.53 -224.47 -1.02 -6.94 16 4 C 0.04 0.42 5.38 -3.83 -0.02 0.40 16 5 C -0.15 -1.25 9.84 37.16 0.37 -0.88 16 6 C 0.06 0.81 2.05 -65.89 -0.13 0.67 16 7 H 0.05 0.68 6.63 -51.93 -0.34 0.33 16 8 C -0.12 -1.66 5.23 -24.60 -0.13 -1.79 16 9 C 0.03 0.58 5.51 -2.30 -0.01 0.57 16 10 N -0.54 -9.76 5.31 -235.15 -1.25 -11.01 16 11 C 0.32 6.26 5.60 -63.32 -0.35 5.91 16 12 N -0.37 -8.59 3.68 -65.05 -0.24 -8.83 16 13 N -0.33 -8.54 10.77 31.21 0.34 -8.20 16 14 C 0.37 9.24 7.50 -155.27 -1.16 8.08 16 15 C -0.44 -10.29 8.98 -38.20 -0.34 -10.64 16 16 H 0.10 2.02 7.11 -52.48 -0.37 1.65 16 17 C 0.08 1.73 5.50 -17.32 -0.10 1.63 16 18 N -0.73 -18.00 11.90 55.55 0.66 -17.34 16 19 Si 0.93 16.74 29.56 -169.99 -5.02 11.71 16 20 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 23 N -0.51 -11.69 3.17 -124.66 -0.39 -12.08 16 24 C 0.10 1.79 10.64 59.84 0.64 2.43 16 25 C 0.47 10.97 7.37 -86.93 -0.64 10.33 16 26 S -0.72 -16.89 26.61 -107.50 -2.86 -19.75 16 27 C 0.06 0.92 5.34 -2.84 -0.02 0.90 16 28 H 0.06 0.63 6.36 -51.93 -0.33 0.30 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.49 6.55 -51.93 -0.34 0.15 16 31 H 0.08 0.79 7.00 -51.93 -0.36 0.43 16 32 H 0.08 0.67 6.32 -51.93 -0.33 0.34 16 33 H 0.04 0.34 6.19 -51.92 -0.32 0.01 16 34 H 0.08 0.76 6.97 -51.93 -0.36 0.40 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.43 6.48 -51.93 -0.34 0.09 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.09 1.85 5.11 -51.78 -0.26 1.59 16 42 H 0.10 1.88 8.03 -51.93 -0.42 1.46 16 43 H 0.07 1.40 7.34 -51.93 -0.38 1.01 16 44 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.57 7.62 -51.93 -0.40 1.18 16 47 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 48 H 0.09 1.34 7.94 -51.93 -0.41 0.93 16 49 H 0.05 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -29.28 386.41 -13.38 -42.67 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.83 Total: 7.33 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: -1.58 Total: 16.62 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -1.90 Total: -64.40 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.02 Total: 11.71 kcal Atomic # 16 Polarization: -16.89 SS G_CDS: -2.86 Total: -19.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.28 -13.38 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.018 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds