Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47121 * 2 1 4 4 C 1.46895 * 111.00015 * 296.64879 * 3 2 1 5 5 C 1.53000 * 109.47441 * 293.95708 * 4 3 2 6 6 C 1.46904 * 110.99951 * 60.60858 * 3 2 1 7 7 H 1.08998 * 110.62414 * 294.16823 * 6 3 2 8 8 C 1.55135 * 110.70636 * 57.46698 * 6 3 2 9 9 C 1.54905 * 101.65531 * 154.03510 * 8 6 3 10 10 N 1.47847 * 104.79409 * 322.93213 * 9 8 6 11 11 C 1.46899 * 111.00481 * 146.36346 * 10 9 8 12 12 N 1.46495 * 109.47194 * 69.15281 * 11 10 9 13 13 N 1.40156 * 126.14483 * 90.02945 * 12 11 10 14 14 C 1.32244 * 107.75989 * 179.97438 * 13 12 11 15 15 C 1.40119 * 125.92666 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99967 * 179.97438 * 15 14 13 17 17 C 1.40034 * 120.00188 * 359.97438 * 15 14 13 18 18 N 1.30798 * 120.00014 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47342 * 59.99655 * 19 17 15 21 21 H 1.48500 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47226 * 299.99574 * 19 17 15 23 23 N 1.38498 * 108.14655 * 0.02562 * 14 13 12 24 24 C 1.46496 * 125.83736 * 179.97438 * 23 14 13 25 25 C 1.34731 * 108.32880 * 359.73535 * 23 14 13 26 26 S 1.71197 * 125.97316 * 180.26574 * 25 23 14 27 27 C 1.47444 * 108.56807 * 24.09160 * 10 9 8 28 28 H 1.08995 * 109.47348 * 303.85934 * 1 2 3 29 29 H 1.08994 * 109.47491 * 183.85372 * 1 2 3 30 30 H 1.09005 * 109.47036 * 63.85515 * 1 2 3 31 31 H 1.09006 * 109.46947 * 119.99882 * 2 1 3 32 32 H 1.08998 * 109.47349 * 239.99454 * 2 1 3 33 33 H 1.09008 * 109.46941 * 53.95873 * 4 3 2 34 34 H 1.08999 * 109.47027 * 173.95109 * 4 3 2 35 35 H 1.08999 * 109.47115 * 299.99903 * 5 4 3 36 36 H 1.09001 * 109.46785 * 59.99873 * 5 4 3 37 37 H 1.08998 * 109.46992 * 179.97438 * 5 4 3 38 38 H 1.09004 * 110.99037 * 272.12852 * 8 6 3 39 39 H 1.09006 * 110.99197 * 35.94337 * 8 6 3 40 40 H 1.08996 * 110.37627 * 204.09991 * 9 8 6 41 41 H 1.09004 * 110.46660 * 81.80095 * 9 8 6 42 42 H 1.09000 * 109.47630 * 189.15974 * 11 10 9 43 43 H 1.09003 * 109.46592 * 309.15625 * 11 10 9 44 44 H 0.96999 * 120.00140 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47410 * 89.99802 * 24 23 14 46 46 H 1.09001 * 109.47350 * 210.00099 * 24 23 14 47 47 H 1.09006 * 109.47036 * 329.99643 * 24 23 14 48 48 H 1.09000 * 109.88792 * 239.60599 * 27 10 9 49 49 H 1.08997 * 109.88960 * 118.41666 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6152 2.0864 -1.2257 5 6 2.3145 1.4530 -2.4302 6 6 1.5605 2.1057 1.1949 7 1 0.4768 2.2212 1.1809 8 6 2.0218 1.3783 2.4852 9 6 2.0664 2.5450 3.5032 10 7 2.5600 3.7035 2.7285 11 6 1.9544 4.9534 3.2068 12 7 2.4688 5.2654 4.5425 13 7 3.6069 6.0304 4.8322 14 6 3.7348 6.0811 6.1475 15 6 4.7469 6.7486 6.8499 16 1 4.7590 6.7275 7.9297 17 6 5.7428 7.4429 6.1520 18 7 5.7285 7.4679 4.8444 19 14 7.0925 8.3321 7.0885 20 1 7.8475 7.3561 7.9147 21 1 8.0161 8.9840 6.1257 22 1 6.4871 9.3628 7.9697 23 7 2.6955 5.3589 6.7101 24 6 2.4652 5.1621 8.1434 25 6 1.9295 4.8728 5.7140 26 16 0.5199 3.9198 5.9030 27 6 2.2544 3.4798 1.3035 28 1 -0.3634 0.5725 0.8533 29 1 -0.3634 -1.0253 0.0691 30 1 -0.3633 0.4529 -0.9226 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 0.5351 2.0076 -1.3498 34 1 1.8968 3.1368 -1.1530 35 1 3.3945 1.5318 -2.3061 36 1 2.0328 0.4026 -2.5028 37 1 2.0140 1.9732 -3.3397 38 1 1.2966 0.6232 2.7883 39 1 3.0100 0.9376 2.3530 40 1 2.7531 2.3125 4.3171 41 1 1.0695 2.7475 3.8949 42 1 2.2050 5.7639 2.5224 43 1 0.8714 4.8382 3.2523 44 1 6.4186 7.9486 4.3609 45 1 1.8306 5.9630 8.5228 46 1 1.9741 4.2024 8.3040 47 1 3.4196 5.1744 8.6698 48 1 3.1767 3.4765 0.7226 49 1 1.5875 4.2616 0.9401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794636734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = 79.378909 kcal Electronic energy + Delta-G solvation = -28337.462409 eV Core-core repulsion = 24654.873468 eV Total energy + Delta-G solvation = -3682.588941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.66145 -40.74554 -38.35612 -36.11871 -35.62010 -33.19780 -32.40299 -31.66475 -30.50660 -29.24660 -28.29255 -27.76072 -25.94914 -24.85525 -23.44456 -22.73294 -22.47212 -21.76855 -20.26219 -19.54352 -18.51041 -17.76915 -17.59079 -17.33128 -16.82754 -16.52394 -16.35403 -16.15693 -15.59028 -15.26132 -14.98527 -14.69337 -14.48768 -13.98166 -13.93266 -13.90654 -13.66014 -13.46478 -13.36677 -13.11245 -12.99310 -12.96897 -12.82603 -12.68380 -12.52115 -12.43085 -12.23983 -12.09354 -12.03531 -11.86018 -11.70445 -11.64186 -11.39085 -11.36759 -10.91532 -10.66070 -9.58896 -9.21847 -8.76785 -8.64818 -8.42472 -6.96620 0.50944 0.77749 1.30661 1.44985 1.59336 1.62997 1.87096 2.12849 2.39836 2.80647 2.99910 3.10653 3.44488 3.57207 3.75545 3.98935 4.03309 4.10102 4.10612 4.26741 4.34488 4.34675 4.38736 4.44035 4.44981 4.51975 4.57752 4.63920 4.69538 4.71032 4.79067 4.85819 4.90175 4.91484 4.98933 5.05721 5.09851 5.13265 5.16079 5.18697 5.26270 5.26419 5.45769 5.70002 5.79538 5.92452 6.11879 6.14504 6.18686 6.48401 6.57287 7.33215 8.25995 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.003086 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.852539 B = 9072.450550 C =10480.256519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.046 3.954 3 N -0.532 5.532 4 C 0.041 3.959 5 C -0.142 4.142 6 C 0.077 3.923 7 H 0.055 0.945 8 C -0.104 4.104 9 C 0.043 3.957 10 N -0.551 5.551 11 C 0.319 3.681 12 N -0.369 5.369 13 N -0.365 5.365 14 C 0.351 3.649 15 C -0.452 4.452 16 H 0.119 0.881 17 C 0.034 3.966 18 N -0.775 5.775 19 Si 1.007 2.993 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.252 1.252 23 N -0.516 5.516 24 C 0.095 3.905 25 C 0.454 3.546 26 S -0.730 6.730 27 C 0.065 3.935 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.292 0.708 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.085 0.915 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -7.111 -8.524 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.081 4.081 3 N -0.257 5.257 4 C -0.086 4.086 5 C -0.199 4.199 6 C -0.032 4.032 7 H 0.073 0.927 8 C -0.142 4.142 9 C -0.085 4.085 10 N -0.278 5.278 11 C 0.107 3.893 12 N -0.155 5.155 13 N -0.198 5.198 14 C 0.102 3.898 15 C -0.494 4.494 16 H 0.137 0.863 17 C -0.189 4.189 18 N -0.400 5.400 19 Si 0.826 3.174 20 H -0.178 1.178 21 H -0.197 1.197 22 H -0.176 1.176 23 N -0.217 5.217 24 C -0.047 4.047 25 C 0.083 3.917 26 S -0.605 6.605 27 C -0.063 4.063 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.993 -7.251 -9.551 12.156 hybrid contribution -0.792 0.666 0.893 1.367 sum -2.786 -6.585 -8.658 11.229 Atomic orbital electron populations 1.22367 0.97746 1.02873 1.01653 1.22239 0.93283 0.89314 1.03270 1.62307 1.59507 1.02692 1.01150 1.22202 0.98212 0.98498 0.89698 1.21742 1.00812 1.00993 0.96390 1.22642 0.96756 0.93237 0.90569 0.92719 1.22628 1.02063 0.96564 0.92947 1.23286 1.00031 0.89716 0.95513 1.63380 1.58413 1.01680 1.04331 1.22062 0.94775 0.93744 0.78679 1.49430 1.21423 1.39419 1.05192 1.79343 1.04490 1.24963 1.10999 1.21736 0.88555 0.91197 0.88295 1.18888 1.05805 1.28933 0.95749 0.86303 1.26918 1.00623 0.95648 0.95740 1.69979 1.31069 1.29700 1.09210 0.84855 0.75913 0.78458 0.78201 1.17797 1.19750 1.17605 1.46259 1.22667 1.43960 1.08812 1.22041 1.04270 1.03995 0.74357 1.22960 0.92951 0.91458 0.84355 1.92518 1.19911 1.54201 1.93900 1.22705 1.00602 0.96274 0.86693 0.93579 0.91044 0.92131 0.90973 0.89279 0.94033 0.91145 0.92721 0.92160 0.91191 0.90003 0.90761 0.94851 0.90461 0.87546 0.90667 0.89759 0.89947 0.89210 0.87561 0.89658 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.25 71.98 0.67 -2.41 16 2 C 0.05 0.83 5.60 86.30 0.48 1.31 16 3 N -0.53 -11.33 4.53 -864.10 -3.92 -15.24 16 4 C 0.04 0.74 5.38 86.30 0.46 1.21 16 5 C -0.14 -2.12 9.84 71.98 0.71 -1.41 16 6 C 0.08 1.94 2.05 46.09 0.09 2.04 16 7 H 0.06 1.37 6.63 -2.39 -0.02 1.35 16 8 C -0.10 -2.96 5.23 31.98 0.17 -2.80 16 9 C 0.04 1.60 5.51 86.77 0.48 2.08 16 10 N -0.55 -20.61 5.31 -897.88 -4.77 -25.38 16 11 C 0.32 12.82 5.60 170.81 0.96 13.78 16 12 N -0.37 -17.77 3.68 -359.73 -1.32 -19.10 16 13 N -0.37 -19.48 10.77 -55.17 -0.59 -20.07 16 14 C 0.35 17.65 7.50 133.52 1.00 18.65 16 15 C -0.45 -21.00 8.98 23.16 0.21 -20.79 16 16 H 0.12 4.78 7.11 -2.91 -0.02 4.75 16 17 C 0.03 1.52 5.50 85.28 0.47 1.98 16 18 N -0.77 -38.26 11.90 21.84 0.26 -38.00 16 19 Si 1.01 33.07 29.56 68.60 2.03 35.10 16 20 H -0.25 -7.98 7.11 99.48 0.71 -7.27 16 21 H -0.27 -8.81 7.11 99.48 0.71 -8.11 16 22 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 23 N -0.52 -23.70 3.17 -548.30 -1.74 -25.44 16 24 C 0.09 3.32 10.64 127.77 1.36 4.68 16 25 C 0.45 21.88 7.37 179.06 1.32 23.20 16 26 S -0.73 -34.92 26.61 -56.49 -1.50 -36.42 16 27 C 0.06 1.87 5.34 86.65 0.46 2.33 16 28 H 0.05 0.89 6.36 -2.39 -0.02 0.87 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.93 6.55 -2.38 -0.02 0.92 16 31 H 0.07 1.37 7.00 -2.38 -0.02 1.36 16 32 H 0.09 1.37 6.32 -2.39 -0.02 1.36 16 33 H 0.04 0.71 6.19 -2.38 -0.01 0.69 16 34 H 0.07 1.33 6.97 -2.39 -0.02 1.32 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.82 6.48 -2.39 -0.02 0.80 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 2.12 8.07 -2.38 -0.02 2.11 16 39 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 3.15 5.11 -2.48 -0.01 3.14 16 42 H 0.11 4.07 8.03 -2.39 -0.02 4.05 16 43 H 0.08 2.96 7.34 -2.39 -0.02 2.94 16 44 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 45 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.09 3.13 7.62 -2.39 -0.02 3.11 16 47 H 0.11 3.20 7.32 -2.38 -0.02 3.18 16 48 H 0.09 2.54 7.94 -2.39 -0.02 2.52 16 49 H 0.07 1.69 7.55 -2.39 -0.02 1.68 16 Total: -1.00 -64.05 386.41 -1.77 -65.82 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.95 Total: 34.89 kcal Atomic # 6 Polarization: 35.01 SS G_CDS: 8.84 Total: 43.85 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -12.08 Total: -143.23 kcal Atomic # 14 Polarization: 33.07 SS G_CDS: 2.03 Total: 35.10 kcal Atomic # 16 Polarization: -34.92 SS G_CDS: -1.50 Total: -36.42 kcal Total: -64.05 -1.77 -65.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.201 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds