Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00302 * 2 1 4 4 C 1.46895 * 110.99977 * 123.96256 * 2 1 3 5 5 C 1.53002 * 112.85190 * 163.88601 * 4 2 1 6 6 N 1.46900 * 109.46739 * 305.70680 * 5 4 2 7 7 C 1.46897 * 111.00442 * 77.08623 * 6 5 4 8 8 C 1.46903 * 110.99797 * 201.04474 * 6 5 4 9 9 N 1.46498 * 109.47132 * 169.99987 * 8 6 5 10 10 N 1.40168 * 126.15094 * 90.02145 * 9 8 6 11 11 C 1.32237 * 107.76241 * 180.02562 * 10 9 8 12 12 C 1.40116 * 125.92365 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99583 * 179.97438 * 12 11 10 14 14 C 1.40030 * 120.00403 * 359.97438 * 12 11 10 15 15 N 1.30806 * 119.99786 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00311 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46774 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47002 * 119.99789 * 16 14 12 19 19 H 1.48498 * 109.47068 * 240.00196 * 16 14 12 20 20 N 1.38503 * 108.14553 * 359.97438 * 11 10 9 21 21 C 1.46498 * 125.83338 * 180.02562 * 20 11 10 22 22 C 1.34731 * 108.33064 * 359.73844 * 20 11 10 23 23 S 1.71195 * 125.97330 * 180.26018 * 22 20 11 24 24 C 1.53783 * 113.61367 * 295.08007 * 4 2 1 25 25 C 1.53772 * 87.17772 * 139.93908 * 24 4 2 26 26 C 1.53779 * 113.61740 * 32.57177 * 4 2 1 27 27 H 1.08998 * 109.46682 * 288.13648 * 1 2 3 28 28 H 1.09001 * 109.46923 * 48.13070 * 1 2 3 29 29 H 1.08989 * 109.47579 * 168.13320 * 1 2 3 30 30 H 1.08997 * 109.46999 * 178.27040 * 3 2 1 31 31 H 1.08999 * 109.47888 * 298.27759 * 3 2 1 32 32 H 1.09002 * 109.46957 * 58.27998 * 3 2 1 33 33 H 1.08994 * 109.47272 * 65.70481 * 5 4 2 34 34 H 1.08995 * 109.47182 * 185.70908 * 5 4 2 35 35 H 1.09001 * 109.46524 * 52.18375 * 7 6 5 36 36 H 1.08997 * 109.47150 * 172.18421 * 7 6 5 37 37 H 1.08992 * 109.47105 * 292.18972 * 7 6 5 38 38 H 1.08995 * 109.46935 * 289.99928 * 8 6 5 39 39 H 1.08997 * 109.47424 * 50.00053 * 8 6 5 40 40 H 0.97002 * 120.00007 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.46942 * 90.00288 * 21 20 11 42 42 H 1.09001 * 109.47432 * 210.00097 * 21 20 11 43 43 H 1.09000 * 109.47592 * 330.00391 * 21 20 11 44 44 H 1.09004 * 113.61321 * 254.53887 * 24 4 2 45 45 H 1.09003 * 113.61212 * 25.34447 * 24 4 2 46 46 H 1.09004 * 113.61442 * 89.15752 * 25 24 4 47 47 H 1.08996 * 113.61485 * 220.06423 * 25 24 4 48 48 H 1.09004 * 113.61577 * 334.57433 * 26 4 2 49 49 H 1.09006 * 113.61141 * 105.39132 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1374 5 6 3.4730 -1.1294 0.9763 6 7 3.6689 -1.8277 -0.3012 7 6 3.6615 -0.8816 -1.4249 8 6 4.9081 -2.6165 -0.2853 9 7 4.9527 -3.4797 -1.4680 10 7 5.5064 -3.1492 -2.7126 11 6 5.3493 -4.1898 -3.5132 12 6 5.7659 -4.2699 -4.8486 13 1 5.5881 -5.1712 -5.4166 14 6 6.4127 -3.1815 -5.4468 15 7 6.6285 -2.0901 -4.7588 16 14 6.9687 -3.2885 -7.2269 17 1 6.6093 -4.6197 -7.7785 18 1 6.2978 -2.2272 -8.0198 19 1 8.4405 -3.1038 -7.2978 20 7 4.7026 -5.1872 -2.8024 21 6 4.3359 -6.5083 -3.3186 22 6 4.4740 -4.7372 -1.5532 23 16 3.7054 -5.6079 -0.2955 24 6 1.6586 -0.1485 2.5049 25 6 1.4117 -1.5811 3.0060 26 6 1.1077 -1.9543 1.5436 27 1 -0.3632 0.3199 0.9766 28 1 -0.3633 0.6859 -0.7653 29 1 -0.3634 -1.0056 -0.2113 30 1 3.0847 1.3424 0.0310 31 1 1.6713 1.8852 -0.9050 32 1 1.6213 1.9042 0.8742 33 1 4.0741 -0.2204 0.9894 34 1 3.7788 -1.7792 1.7962 35 1 4.3717 -0.0784 -1.2283 36 1 3.9454 -1.4018 -2.3397 37 1 2.6620 -0.4625 -1.5404 38 1 5.7664 -1.9448 -0.2931 39 1 4.9360 -3.2312 0.6144 40 1 7.0762 -1.3360 -5.1732 41 1 5.1532 -7.2073 -3.1413 42 1 3.4390 -6.8613 -2.8094 43 1 4.1425 -6.4393 -4.3891 44 1 2.5065 0.3416 2.9835 45 1 0.7620 0.4713 2.4951 46 1 2.3041 -2.0646 3.4035 47 1 0.5505 -1.6697 3.6682 48 1 0.0596 -1.8295 1.2714 49 1 1.5103 -2.9223 1.2449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794644006.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = 135.404717 kcal Electronic energy + Delta-G solvation = -29095.327203 eV Core-core repulsion = 25415.167723 eV Total energy + Delta-G solvation = -3680.159480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81326 -40.34448 -36.62840 -34.76761 -34.12332 -33.63734 -30.71053 -28.64973 -27.71985 -27.50047 -26.51701 -25.63731 -25.23648 -24.30785 -22.46525 -21.91981 -20.95288 -20.73418 -17.90947 -17.61064 -16.75133 -16.60762 -15.69632 -15.64747 -15.31525 -15.12470 -14.69478 -14.61707 -14.51647 -14.24992 -14.07076 -13.54566 -13.09450 -12.81313 -12.42533 -12.26410 -12.23284 -12.15798 -12.06037 -11.76893 -11.65750 -11.53714 -11.45469 -11.32190 -11.17377 -10.99455 -10.88424 -10.68897 -10.53759 -10.43666 -10.34724 -10.08759 -10.02949 -9.47397 -9.14734 -8.83994 -8.14038 -7.72451 -7.02659 -6.66591 -6.56120 -5.10416 2.42585 2.69957 2.78196 2.92423 2.97164 3.47156 3.56598 3.66864 3.94368 4.12327 4.34337 4.65377 4.75447 4.85792 4.89091 4.98091 5.20596 5.28402 5.30849 5.43455 5.47640 5.54150 5.59462 5.64247 5.70916 5.73182 5.74327 5.81314 5.88790 5.90865 5.92943 5.98629 6.11447 6.16504 6.18719 6.32361 6.36257 6.43569 6.55967 6.64751 6.83739 6.95679 7.07619 7.16054 7.16635 7.37052 7.47316 7.70545 7.88440 8.28241 8.39019 9.21005 9.94746 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.003777 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.967723 B = 7410.929498 C = 8764.679706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.518 5.518 3 C 0.023 3.977 4 C 0.106 3.894 5 C 0.096 3.904 6 N -0.529 5.529 7 C 0.017 3.983 8 C 0.324 3.676 9 N -0.374 5.374 10 N -0.342 5.342 11 C 0.375 3.625 12 C -0.438 4.438 13 H 0.097 0.903 14 C 0.077 3.923 15 N -0.738 5.738 16 Si 0.927 3.073 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.271 1.271 20 N -0.518 5.518 21 C 0.101 3.899 22 C 0.481 3.519 23 S -0.709 6.709 24 C -0.168 4.168 25 C -0.138 4.138 26 C -0.130 4.130 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.008 0.992 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.284 0.716 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 6.768 5.391 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.240 5.240 3 C -0.125 4.125 4 C 0.016 3.984 5 C -0.033 4.033 6 N -0.254 5.254 7 C -0.131 4.131 8 C 0.112 3.888 9 N -0.160 5.160 10 N -0.173 5.173 11 C 0.126 3.874 12 C -0.480 4.480 13 H 0.115 0.885 14 C -0.149 4.149 15 N -0.363 5.363 16 Si 0.750 3.250 17 H -0.182 1.182 18 H -0.195 1.195 19 H -0.196 1.196 20 N -0.219 5.219 21 C -0.042 4.042 22 C 0.112 3.888 23 S -0.584 6.584 24 C -0.208 4.208 25 C -0.176 4.176 26 C -0.168 4.168 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.863 6.968 5.759 10.775 hybrid contribution 0.816 0.778 -0.714 1.335 sum -5.048 7.746 5.045 10.532 Atomic orbital electron populations 1.22460 0.87959 1.02527 0.99583 1.61989 1.07227 1.12650 1.42146 1.22388 1.00829 0.89089 1.00173 1.22378 0.95041 0.94549 0.86448 1.21655 0.93246 0.96468 0.91926 1.61564 1.34944 1.25748 1.03171 1.22861 1.02770 0.93605 0.93851 1.21709 0.91530 0.90618 0.84917 1.49074 1.45198 1.09205 1.12478 1.79314 1.31826 1.18634 0.87564 1.21267 0.90251 0.81658 0.94251 1.18381 1.35624 1.02339 0.91626 0.88520 1.25818 0.94188 0.94082 1.00803 1.69889 1.26725 1.02596 1.37064 0.85934 0.78969 0.79807 0.80246 1.18188 1.19535 1.19572 1.45964 1.50697 1.15945 1.09309 1.21728 1.01985 0.80588 0.99881 1.22837 0.89589 0.87626 0.88747 1.92641 1.63178 1.66395 1.36231 1.23546 1.01484 0.97362 0.98428 1.22767 1.01733 0.95958 0.97176 1.23222 0.99553 0.99720 0.94303 0.95680 0.91966 0.90827 0.91497 0.91638 0.95928 0.94732 0.90250 0.97314 0.90526 0.88078 0.92392 0.87689 0.90524 0.91649 0.89244 0.89890 0.91728 0.90325 0.89987 0.91766 0.89983 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.30 60.07 0.50 0.75 16 2 N -0.52 -6.67 2.43 -234.47 -0.57 -7.24 16 3 C 0.02 0.26 8.16 60.06 0.49 0.75 16 4 C 0.11 1.36 0.79 -130.79 -0.10 1.26 16 5 C 0.10 1.37 4.27 -3.82 -0.02 1.36 16 6 N -0.53 -9.47 4.82 -246.86 -1.19 -10.66 16 7 C 0.02 0.31 8.35 60.06 0.50 0.82 16 8 C 0.32 6.37 5.90 -63.31 -0.37 6.00 16 9 N -0.37 -8.73 3.35 -65.05 -0.22 -8.95 16 10 N -0.34 -8.67 9.47 31.21 0.30 -8.37 16 11 C 0.38 9.28 7.50 -155.27 -1.16 8.12 16 12 C -0.44 -10.25 8.98 -38.21 -0.34 -10.59 16 13 H 0.10 2.05 7.11 -52.48 -0.37 1.67 16 14 C 0.08 1.74 5.50 -17.32 -0.10 1.65 16 15 N -0.74 -17.73 11.90 55.55 0.66 -17.07 16 16 Si 0.93 16.65 29.56 -169.99 -5.03 11.63 16 17 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 20 N -0.52 -11.94 3.17 -124.66 -0.39 -12.33 16 21 C 0.10 1.85 10.64 59.85 0.64 2.49 16 22 C 0.48 11.62 7.84 -86.93 -0.68 10.93 16 23 S -0.71 -17.55 29.50 -107.50 -3.17 -20.72 16 24 C -0.17 -1.80 6.06 -25.92 -0.16 -1.95 16 25 C -0.14 -1.54 7.75 -25.83 -0.20 -1.74 16 26 C -0.13 -1.74 6.84 -25.83 -0.18 -1.92 16 27 H 0.02 0.25 6.33 -51.93 -0.33 -0.07 16 28 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 29 H 0.07 0.89 6.65 -51.94 -0.35 0.55 16 30 H 0.07 0.79 6.16 -51.93 -0.32 0.47 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 32 H 0.02 0.23 7.43 -51.93 -0.39 -0.16 16 33 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 34 H 0.08 1.09 6.89 -51.93 -0.36 0.73 16 35 H 0.01 0.15 7.63 -51.93 -0.40 -0.25 16 36 H 0.08 1.75 6.29 -51.93 -0.33 1.42 16 37 H 0.10 1.80 5.02 -51.93 -0.26 1.54 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.11 2.03 7.31 -51.93 -0.38 1.65 16 40 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.63 7.62 -51.93 -0.40 1.23 16 43 H 0.08 1.34 7.32 -51.93 -0.38 0.96 16 44 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.08 0.81 6.47 -51.93 -0.34 0.47 16 46 H 0.08 0.92 7.62 -51.93 -0.40 0.52 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.08 1.04 5.59 -51.93 -0.29 0.75 16 49 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -29.42 385.80 -12.69 -42.12 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.71 Total: 7.86 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: -1.18 Total: 17.92 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -1.42 Total: -64.62 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.63 kcal Atomic # 16 Polarization: -17.55 SS G_CDS: -3.17 Total: -20.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.42 -12.69 -42.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644006.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.520 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds