Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00302 * 2 1 4 4 C 1.46895 * 110.99977 * 123.96256 * 2 1 3 5 5 C 1.53002 * 112.85190 * 163.88601 * 4 2 1 6 6 N 1.46900 * 109.46739 * 305.70680 * 5 4 2 7 7 C 1.46897 * 111.00442 * 77.08623 * 6 5 4 8 8 C 1.46903 * 110.99797 * 201.04474 * 6 5 4 9 9 N 1.46498 * 109.47132 * 169.99987 * 8 6 5 10 10 N 1.40168 * 126.15094 * 90.02145 * 9 8 6 11 11 C 1.32237 * 107.76241 * 180.02562 * 10 9 8 12 12 C 1.40116 * 125.92365 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99583 * 179.97438 * 12 11 10 14 14 C 1.40030 * 120.00403 * 359.97438 * 12 11 10 15 15 N 1.30806 * 119.99786 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00311 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46774 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47002 * 119.99789 * 16 14 12 19 19 H 1.48498 * 109.47068 * 240.00196 * 16 14 12 20 20 N 1.38503 * 108.14553 * 359.97438 * 11 10 9 21 21 C 1.46498 * 125.83338 * 180.02562 * 20 11 10 22 22 C 1.34731 * 108.33064 * 359.73844 * 20 11 10 23 23 S 1.71195 * 125.97330 * 180.26018 * 22 20 11 24 24 C 1.53783 * 113.61367 * 295.08007 * 4 2 1 25 25 C 1.53772 * 87.17772 * 139.93908 * 24 4 2 26 26 C 1.53779 * 113.61740 * 32.57177 * 4 2 1 27 27 H 1.08998 * 109.46682 * 288.13648 * 1 2 3 28 28 H 1.09001 * 109.46923 * 48.13070 * 1 2 3 29 29 H 1.08989 * 109.47579 * 168.13320 * 1 2 3 30 30 H 1.08997 * 109.46999 * 178.27040 * 3 2 1 31 31 H 1.08999 * 109.47888 * 298.27759 * 3 2 1 32 32 H 1.09002 * 109.46957 * 58.27998 * 3 2 1 33 33 H 1.08994 * 109.47272 * 65.70481 * 5 4 2 34 34 H 1.08995 * 109.47182 * 185.70908 * 5 4 2 35 35 H 1.09001 * 109.46524 * 52.18375 * 7 6 5 36 36 H 1.08997 * 109.47150 * 172.18421 * 7 6 5 37 37 H 1.08992 * 109.47105 * 292.18972 * 7 6 5 38 38 H 1.08995 * 109.46935 * 289.99928 * 8 6 5 39 39 H 1.08997 * 109.47424 * 50.00053 * 8 6 5 40 40 H 0.97002 * 120.00007 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.46942 * 90.00288 * 21 20 11 42 42 H 1.09001 * 109.47432 * 210.00097 * 21 20 11 43 43 H 1.09000 * 109.47592 * 330.00391 * 21 20 11 44 44 H 1.09004 * 113.61321 * 254.53887 * 24 4 2 45 45 H 1.09003 * 113.61212 * 25.34447 * 24 4 2 46 46 H 1.09004 * 113.61442 * 89.15752 * 25 24 4 47 47 H 1.08996 * 113.61485 * 220.06423 * 25 24 4 48 48 H 1.09004 * 113.61577 * 334.57433 * 26 4 2 49 49 H 1.09006 * 113.61141 * 105.39132 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1374 5 6 3.4730 -1.1294 0.9763 6 7 3.6689 -1.8277 -0.3012 7 6 3.6615 -0.8816 -1.4249 8 6 4.9081 -2.6165 -0.2853 9 7 4.9527 -3.4797 -1.4680 10 7 5.5064 -3.1492 -2.7126 11 6 5.3493 -4.1898 -3.5132 12 6 5.7659 -4.2699 -4.8486 13 1 5.5881 -5.1712 -5.4166 14 6 6.4127 -3.1815 -5.4468 15 7 6.6285 -2.0901 -4.7588 16 14 6.9687 -3.2885 -7.2269 17 1 6.6093 -4.6197 -7.7785 18 1 6.2978 -2.2272 -8.0198 19 1 8.4405 -3.1038 -7.2978 20 7 4.7026 -5.1872 -2.8024 21 6 4.3359 -6.5083 -3.3186 22 6 4.4740 -4.7372 -1.5532 23 16 3.7054 -5.6079 -0.2955 24 6 1.6586 -0.1485 2.5049 25 6 1.4117 -1.5811 3.0060 26 6 1.1077 -1.9543 1.5436 27 1 -0.3632 0.3199 0.9766 28 1 -0.3633 0.6859 -0.7653 29 1 -0.3634 -1.0056 -0.2113 30 1 3.0847 1.3424 0.0310 31 1 1.6713 1.8852 -0.9050 32 1 1.6213 1.9042 0.8742 33 1 4.0741 -0.2204 0.9894 34 1 3.7788 -1.7792 1.7962 35 1 4.3717 -0.0784 -1.2283 36 1 3.9454 -1.4018 -2.3397 37 1 2.6620 -0.4625 -1.5404 38 1 5.7664 -1.9448 -0.2931 39 1 4.9360 -3.2312 0.6144 40 1 7.0762 -1.3360 -5.1732 41 1 5.1532 -7.2073 -3.1413 42 1 3.4390 -6.8613 -2.8094 43 1 4.1425 -6.4393 -4.3891 44 1 2.5065 0.3416 2.9835 45 1 0.7620 0.4713 2.4951 46 1 2.3041 -2.0646 3.4035 47 1 0.5505 -1.6697 3.6682 48 1 0.0596 -1.8295 1.2714 49 1 1.5103 -2.9223 1.2449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794644006.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = 120.383897 kcal Electronic energy + Delta-G solvation = -29095.978555 eV Core-core repulsion = 25415.167723 eV Total energy + Delta-G solvation = -3680.810831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59371 -41.39077 -38.10173 -35.85850 -35.70679 -35.30924 -32.47956 -30.03968 -29.02420 -28.66865 -28.20849 -27.10793 -26.19785 -25.55185 -23.90174 -23.03711 -22.63812 -22.39586 -19.46319 -18.90882 -18.28983 -17.83416 -17.38687 -17.20363 -16.64451 -16.57666 -16.22738 -15.94611 -15.69581 -15.43412 -15.24804 -15.08434 -14.39161 -14.07895 -13.76135 -13.66863 -13.48145 -13.42034 -13.28988 -13.12759 -13.04234 -12.78585 -12.60907 -12.57375 -12.44481 -12.40471 -12.31477 -12.20631 -11.93923 -11.71127 -11.67474 -11.38298 -11.32258 -11.07851 -10.86457 -10.64128 -9.38390 -8.87391 -8.77582 -8.59456 -8.48585 -6.94180 0.59135 0.88774 1.28311 1.45322 1.61955 1.72072 1.87183 2.14153 2.45220 2.89016 3.06643 3.11848 3.57954 3.67234 3.76544 3.83526 3.99156 4.07395 4.12876 4.29961 4.35186 4.44510 4.46824 4.47558 4.57073 4.58317 4.62861 4.69491 4.71876 4.76221 4.80646 4.87525 4.90898 4.96879 5.03356 5.06771 5.07505 5.11823 5.23041 5.29902 5.31515 5.43142 5.50905 5.75854 5.93277 6.02680 6.19499 6.23571 6.32581 6.51708 6.59584 7.36914 8.26190 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.003777 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.967723 B = 7410.929498 C = 8764.679706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.027 3.973 4 C 0.103 3.897 5 C 0.096 3.904 6 N -0.536 5.536 7 C 0.037 3.963 8 C 0.322 3.678 9 N -0.371 5.371 10 N -0.367 5.367 11 C 0.353 3.647 12 C -0.452 4.452 13 H 0.117 0.883 14 C 0.037 3.963 15 N -0.775 5.775 16 Si 1.005 2.995 17 H -0.245 1.245 18 H -0.269 1.269 19 H -0.268 1.268 20 N -0.519 5.519 21 C 0.096 3.904 22 C 0.467 3.533 23 S -0.735 6.735 24 C -0.150 4.150 25 C -0.131 4.131 26 C -0.135 4.135 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.014 0.986 36 H 0.032 0.968 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.290 0.710 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 7.683 4.880 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.264 5.264 3 C -0.121 4.121 4 C 0.013 3.987 5 C -0.032 4.032 6 N -0.261 5.261 7 C -0.111 4.111 8 C 0.111 3.889 9 N -0.156 5.156 10 N -0.200 5.200 11 C 0.104 3.896 12 C -0.494 4.494 13 H 0.135 0.865 14 C -0.186 4.186 15 N -0.400 5.400 16 Si 0.824 3.176 17 H -0.168 1.168 18 H -0.194 1.194 19 H -0.193 1.193 20 N -0.220 5.220 21 C -0.045 4.045 22 C 0.096 3.904 23 S -0.612 6.612 24 C -0.190 4.190 25 C -0.169 4.169 26 C -0.173 4.173 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.032 0.968 36 H 0.051 0.949 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.141 7.876 5.273 11.294 hybrid contribution 0.899 0.521 -0.568 1.184 sum -5.242 8.397 4.706 10.961 Atomic orbital electron populations 1.22418 0.86974 1.01968 1.00757 1.61878 1.08293 1.13698 1.42551 1.22358 1.00205 0.88345 1.01146 1.22327 0.93668 0.94762 0.87937 1.21782 0.94856 0.96593 0.90017 1.61570 1.33747 1.26155 1.04639 1.22626 1.03181 0.93014 0.92277 1.21845 0.92592 0.90631 0.83838 1.49397 1.44269 1.09282 1.12677 1.79252 1.32768 1.19567 0.88400 1.21686 0.90839 0.82053 0.94990 1.18924 1.35518 1.03578 0.91344 0.86517 1.26852 0.93474 0.93160 1.05129 1.69981 1.27186 1.03538 1.39297 0.84787 0.78259 0.80285 0.74268 1.16753 1.19364 1.19321 1.46245 1.50077 1.17008 1.08696 1.22001 1.02457 0.78996 1.01059 1.22846 0.90322 0.88049 0.89182 1.92559 1.64586 1.66877 1.37147 1.23422 1.02306 0.97059 0.96179 1.22736 1.02227 0.96119 0.95796 1.23202 0.99808 0.97864 0.96391 0.94151 0.91024 0.92310 0.92397 0.91218 0.94319 0.93518 0.89875 0.96776 0.94924 0.87212 0.92148 0.87642 0.89881 0.90060 0.89423 0.87649 0.90595 0.89124 0.90242 0.90255 0.89388 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 8.30 127.69 1.06 1.62 16 2 N -0.54 -13.32 2.43 -895.72 -2.18 -15.50 16 3 C 0.03 0.56 8.16 127.69 1.04 1.60 16 4 C 0.10 2.55 0.79 4.06 0.00 2.55 16 5 C 0.10 2.69 4.27 86.30 0.37 3.06 16 6 N -0.54 -19.60 4.82 -934.93 -4.51 -24.10 16 7 C 0.04 1.41 8.35 127.69 1.07 2.47 16 8 C 0.32 13.06 5.90 170.81 1.01 14.07 16 9 N -0.37 -17.85 3.35 -359.73 -1.20 -19.05 16 10 N -0.37 -19.15 9.47 -55.17 -0.52 -19.67 16 11 C 0.35 17.68 7.50 133.52 1.00 18.69 16 12 C -0.45 -20.92 8.98 23.16 0.21 -20.71 16 13 H 0.12 4.74 7.11 -2.91 -0.02 4.72 16 14 C 0.04 1.63 5.50 85.28 0.47 2.10 16 15 N -0.78 -37.51 11.90 21.84 0.26 -37.25 16 16 Si 1.00 32.91 29.56 68.60 2.03 34.94 16 17 H -0.24 -7.42 7.11 99.48 0.71 -6.72 16 18 H -0.27 -8.69 7.11 99.48 0.71 -7.98 16 19 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16 20 N -0.52 -24.18 3.17 -548.30 -1.74 -25.92 16 21 C 0.10 3.47 10.64 127.77 1.36 4.83 16 22 C 0.47 23.08 7.84 179.06 1.40 24.48 16 23 S -0.74 -37.17 29.50 -56.49 -1.67 -38.84 16 24 C -0.15 -2.82 6.06 31.12 0.19 -2.63 16 25 C -0.13 -2.70 7.75 31.18 0.24 -2.46 16 26 C -0.13 -3.58 6.84 31.18 0.21 -3.37 16 27 H 0.04 0.72 6.33 -2.39 -0.02 0.71 16 28 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 29 H 0.06 1.40 6.65 -2.39 -0.02 1.39 16 30 H 0.06 1.28 6.16 -2.39 -0.01 1.27 16 31 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.04 0.67 7.43 -2.39 -0.02 0.65 16 33 H 0.05 1.21 6.86 -2.39 -0.02 1.20 16 34 H 0.08 2.26 6.89 -2.39 -0.02 2.25 16 35 H 0.01 0.50 7.63 -2.39 -0.02 0.48 16 36 H 0.03 1.53 6.29 -2.39 -0.02 1.51 16 37 H 0.11 3.95 5.02 -2.39 -0.01 3.94 16 38 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 39 H 0.11 4.22 7.31 -2.39 -0.02 4.20 16 40 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.09 3.18 7.62 -2.39 -0.02 3.16 16 43 H 0.11 3.26 7.32 -2.39 -0.02 3.25 16 44 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.09 1.53 6.47 -2.39 -0.02 1.52 16 46 H 0.08 1.69 7.62 -2.38 -0.02 1.67 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 2.19 5.59 -2.39 -0.01 2.18 16 49 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 Total: -1.00 -64.74 385.80 1.06 -63.68 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.95 Total: 35.41 kcal Atomic # 6 Polarization: 36.66 SS G_CDS: 9.63 Total: 46.30 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -9.89 Total: -141.48 kcal Atomic # 14 Polarization: 32.91 SS G_CDS: 2.03 Total: 34.94 kcal Atomic # 16 Polarization: -37.17 SS G_CDS: -1.67 Total: -38.84 kcal Total: -64.74 1.06 -63.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644006.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.059 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds