Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99497 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47438 * 300.00363 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00477 * 3 2 1 7 7 C 1.37873 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47082 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00271 * 180.02562 * 12 11 10 14 14 O 1.21351 * 119.99897 * 359.97438 * 13 12 11 15 15 C 1.49446 * 119.99877 * 179.97438 * 13 12 11 16 16 O 1.21351 * 120.00227 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99872 * 179.97438 * 15 13 12 18 18 C 1.46506 * 119.99873 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.46684 * 180.02562 * 18 17 15 20 20 H 1.08996 * 109.16404 * 59.27191 * 19 18 17 21 21 C 1.53769 * 109.16641 * 178.47602 * 19 18 17 22 22 N 1.45638 * 107.39263 * 174.69308 * 21 19 18 23 23 C 1.46891 * 117.35572 * 180.23912 * 22 21 19 24 24 C 1.55305 * 103.36602 * 162.52674 * 23 22 21 25 25 C 1.55091 * 104.90206 * 335.88903 * 24 23 22 26 26 C 1.48940 * 108.73152 * 297.20178 * 22 21 19 27 27 H 1.08996 * 110.33086 * 307.97615 * 26 22 21 28 28 C 1.52188 * 107.08062 * 67.97462 * 26 22 21 29 29 O 1.42641 * 109.17213 * 300.00050 * 19 18 17 30 30 H 0.96992 * 120.00317 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 32 32 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 33 33 H 1.08988 * 109.47037 * 60.00261 * 10 9 7 34 34 H 1.08996 * 109.47129 * 299.99467 * 10 9 7 35 35 H 1.08993 * 109.47839 * 60.00069 * 11 10 9 36 36 H 1.09000 * 109.47160 * 299.99631 * 11 10 9 37 37 H 0.96999 * 119.99685 * 359.97438 * 12 11 10 38 38 H 0.96995 * 120.00018 * 0.27608 * 17 15 13 39 39 H 1.09000 * 109.47212 * 300.00355 * 18 17 15 40 40 H 1.09001 * 109.46577 * 60.00430 * 18 17 15 41 41 H 1.08997 * 109.87791 * 294.16849 * 21 19 18 42 42 H 1.09002 * 109.87150 * 55.22763 * 21 19 18 43 43 H 1.08998 * 110.64589 * 280.99293 * 23 22 21 44 44 H 1.08996 * 110.64259 * 43.89458 * 23 22 21 45 45 H 1.08999 * 110.35746 * 94.74362 * 24 23 22 46 46 H 1.08997 * 110.35751 * 217.03621 * 24 23 22 47 47 H 1.08995 * 110.51424 * 238.46353 * 25 24 23 48 48 H 1.08996 * 110.51232 * 115.74838 * 25 24 23 49 49 H 1.08996 * 109.91587 * 179.23397 * 28 26 22 50 50 H 1.08999 * 109.98237 * 58.10305 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6619 -0.0005 11 6 1.4807 -4.9870 -0.0012 12 7 2.4327 -6.1005 -0.0006 13 6 1.9836 -7.3712 -0.0015 14 8 0.7905 -7.5930 -0.0024 15 6 2.9548 -8.5070 -0.0014 16 8 4.1479 -8.2852 -0.0010 17 7 2.5057 -9.7778 -0.0019 18 6 3.4578 -10.8912 -0.0024 19 6 2.6929 -12.2162 -0.0034 20 1 2.0586 -12.2625 -0.8886 21 6 3.6979 -13.3794 -0.0426 22 7 2.9385 -14.6154 0.0861 23 6 3.6937 -15.8753 0.0802 24 6 2.6892 -16.8988 0.6765 25 6 1.7070 -16.0472 1.5223 26 6 2.2584 -14.6232 1.4111 27 1 2.9764 -14.4230 2.2064 28 6 1.1957 -13.5345 1.3746 29 8 1.8750 -12.2859 1.1631 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 2.8722 -3.6042 0.8894 34 1 2.8722 -3.6042 -0.8905 35 1 0.8543 -5.0446 -0.8913 36 1 0.8537 -5.0450 0.8886 37 1 3.3864 -5.9232 -0.0002 38 1 1.5521 -9.9551 -0.0062 39 1 4.0844 -10.8331 -0.8924 40 1 4.0845 -10.8337 0.8876 41 1 4.2363 -13.3722 -0.9903 42 1 4.4016 -13.2891 0.7850 43 1 3.9680 -16.1542 -0.9372 44 1 4.5813 -15.7942 0.7076 45 1 2.1542 -17.4138 -0.1214 46 1 3.2104 -17.6168 1.3096 47 1 1.7111 -16.3783 2.5607 48 1 0.7005 -16.1005 1.1074 49 1 0.6577 -13.5088 2.3222 50 1 0.4991 -13.7213 0.5573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804057241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -118.103571 kcal Electronic energy + Delta-G solvation = -28579.468183 eV Core-core repulsion = 24413.270137 eV Total energy + Delta-G solvation = -4166.198046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96309 -40.44389 -38.54459 -37.56834 -35.79107 -35.05328 -33.47067 -33.21454 -31.22243 -30.94836 -30.03417 -27.36223 -26.23550 -25.17431 -24.15845 -22.62667 -22.04108 -21.50383 -20.86100 -20.72035 -20.01054 -18.39864 -17.25787 -17.03208 -16.54074 -16.36284 -16.07316 -15.95529 -15.87118 -15.66008 -15.12958 -14.84806 -14.63509 -14.43196 -14.30377 -14.10661 -13.71900 -13.64008 -13.28466 -13.01493 -12.80110 -12.30460 -12.11818 -11.99140 -11.86405 -11.76908 -11.73604 -11.68320 -11.63550 -11.15199 -10.97661 -10.91945 -10.74224 -10.56903 -10.20388 -9.88675 -9.76137 -9.46857 -9.35398 -9.10456 -9.08310 -8.94206 -8.37056 -6.01595 -4.04478 1.46408 2.32895 3.04458 3.24550 3.28035 3.31075 3.38666 3.42640 3.69855 3.92092 4.09083 4.20998 4.38027 4.45230 4.46762 4.55686 4.58124 4.59727 4.70129 4.89023 4.93456 4.99227 5.04447 5.12438 5.21632 5.23334 5.31544 5.32424 5.34525 5.46191 5.54681 5.58739 5.62320 5.71999 5.96918 6.10787 6.15085 6.30815 6.47202 6.56522 6.68674 6.72307 6.95800 6.97254 7.44698 7.63511 7.75111 7.76016 7.97037 8.09492 8.38384 9.02311 9.59957 11.09727 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.044018 B = 0.001419 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.945005 B =19733.070005 C =20162.790249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.692 5.692 13 C 0.501 3.499 14 O -0.525 6.525 15 C 0.509 3.491 16 O -0.523 6.523 17 N -0.696 5.696 18 C 0.127 3.873 19 C 0.087 3.913 20 H 0.076 0.924 21 C 0.028 3.972 22 N -0.528 5.528 23 C 0.044 3.956 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.021 3.979 27 H 0.062 0.938 28 C 0.079 3.921 29 O -0.381 6.381 30 H 0.260 0.740 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.411 0.589 38 H 0.418 0.582 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -37.231 1.166 37.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.344 5.344 13 C 0.280 3.720 14 O -0.402 6.402 15 C 0.290 3.710 16 O -0.399 6.399 17 N -0.350 5.350 18 C 0.003 3.997 19 C 0.028 3.972 20 H 0.094 0.906 21 C -0.101 4.101 22 N -0.253 5.253 23 C -0.084 4.084 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.087 4.087 27 H 0.080 0.920 28 C 0.003 3.997 29 O -0.300 6.300 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.254 0.746 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.119 0.881 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.689 -36.923 0.835 37.368 hybrid contribution 1.150 0.693 0.462 1.420 sum 6.839 -36.230 1.297 36.892 Atomic orbital electron populations 1.69970 1.06055 1.26587 1.50686 1.25021 0.94849 0.99306 0.95249 0.86526 0.80101 0.83730 0.77580 1.19720 1.21013 1.21008 1.21245 0.93100 0.90887 1.50797 0.92513 1.19043 0.93817 0.90803 0.97735 1.21926 0.99875 0.92969 1.01309 1.21842 0.91742 0.84710 1.02538 1.46063 1.12200 1.04977 1.71128 1.19970 0.88442 0.84477 0.79063 1.90764 1.15990 1.84683 1.48729 1.20333 0.88768 0.84355 0.77546 1.90758 1.16242 1.84808 1.48099 1.45569 1.11803 1.04438 1.73224 1.21454 0.91529 0.82989 1.03701 1.22363 0.92121 0.93090 0.89577 0.90597 1.22616 0.95467 0.89314 1.02729 1.63902 1.29589 1.01386 1.30409 1.22847 0.95166 0.89047 1.01328 1.22569 0.96730 0.97201 0.99423 1.22065 0.99836 0.92902 1.00352 1.23183 0.97784 0.96552 0.91224 0.91985 1.22586 0.93048 0.81757 1.02329 1.87922 1.62695 1.35063 1.44273 0.92988 0.96172 0.96177 0.92422 0.92435 0.91090 0.91095 0.75331 0.74556 0.89268 0.90179 0.88969 0.93329 0.89857 0.93918 0.90685 0.91140 0.90867 0.90469 0.88080 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.69 -10.62 5.55 -60.73 -0.34 -10.96 16 13 C 0.50 7.71 7.89 -11.59 -0.09 7.62 16 14 O -0.52 -9.18 16.48 5.50 0.09 -9.09 16 15 C 0.51 6.89 7.89 -11.59 -0.09 6.80 16 16 O -0.52 -7.93 16.48 5.50 0.09 -7.84 16 17 N -0.70 -7.49 5.43 -60.73 -0.33 -7.82 16 18 C 0.13 1.06 5.34 -4.04 -0.02 1.04 16 19 C 0.09 0.63 2.95 -26.33 -0.08 0.55 16 20 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 21 C 0.03 0.17 5.36 -4.11 -0.02 0.15 16 22 N -0.53 -3.31 4.86 -224.47 -1.09 -4.40 16 23 C 0.04 0.22 6.74 -2.61 -0.02 0.20 16 24 C -0.12 -0.48 7.06 -24.40 -0.17 -0.65 16 25 C -0.11 -0.48 6.66 -25.57 -0.17 -0.65 16 26 C 0.02 0.12 2.65 -66.94 -0.18 -0.05 16 27 H 0.06 0.42 8.01 -51.93 -0.42 0.00 16 28 C 0.08 0.51 6.65 36.74 0.24 0.76 16 29 O -0.38 -3.29 10.09 -35.23 -0.36 -3.65 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.10 8.14 -51.94 -0.42 0.68 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.41 5.75 7.94 -40.82 -0.32 5.43 16 38 H 0.42 4.36 7.81 -40.82 -0.32 4.04 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.31 8.03 -51.93 -0.42 -0.11 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.32 8.02 -51.93 -0.42 -0.10 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -32.98 406.98 -10.01 -43.00 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.62 Total: 1.86 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.31 Total: 2.23 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -1.02 Total: -49.20 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.17 Total: -20.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.98 -10.01 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804057241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.106 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds