Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99497 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47438 * 300.00363 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00477 * 3 2 1 7 7 C 1.37873 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47082 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00271 * 180.02562 * 12 11 10 14 14 O 1.21351 * 119.99897 * 359.97438 * 13 12 11 15 15 C 1.49446 * 119.99877 * 179.97438 * 13 12 11 16 16 O 1.21351 * 120.00227 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99872 * 179.97438 * 15 13 12 18 18 C 1.46506 * 119.99873 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.46684 * 180.02562 * 18 17 15 20 20 H 1.08996 * 109.16404 * 59.27191 * 19 18 17 21 21 C 1.53769 * 109.16641 * 178.47602 * 19 18 17 22 22 N 1.45638 * 107.39263 * 174.69308 * 21 19 18 23 23 C 1.46891 * 117.35572 * 180.23912 * 22 21 19 24 24 C 1.55305 * 103.36602 * 162.52674 * 23 22 21 25 25 C 1.55091 * 104.90206 * 335.88903 * 24 23 22 26 26 C 1.48940 * 108.73152 * 297.20178 * 22 21 19 27 27 H 1.08996 * 110.33086 * 307.97615 * 26 22 21 28 28 C 1.52188 * 107.08062 * 67.97462 * 26 22 21 29 29 O 1.42641 * 109.17213 * 300.00050 * 19 18 17 30 30 H 0.96992 * 120.00317 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 32 32 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 33 33 H 1.08988 * 109.47037 * 60.00261 * 10 9 7 34 34 H 1.08996 * 109.47129 * 299.99467 * 10 9 7 35 35 H 1.08993 * 109.47839 * 60.00069 * 11 10 9 36 36 H 1.09000 * 109.47160 * 299.99631 * 11 10 9 37 37 H 0.96999 * 119.99685 * 359.97438 * 12 11 10 38 38 H 0.96995 * 120.00018 * 0.27608 * 17 15 13 39 39 H 1.09000 * 109.47212 * 300.00355 * 18 17 15 40 40 H 1.09001 * 109.46577 * 60.00430 * 18 17 15 41 41 H 1.08997 * 109.87791 * 294.16849 * 21 19 18 42 42 H 1.09002 * 109.87150 * 55.22763 * 21 19 18 43 43 H 1.08998 * 110.64589 * 280.99293 * 23 22 21 44 44 H 1.08996 * 110.64259 * 43.89458 * 23 22 21 45 45 H 1.08999 * 110.35746 * 94.74362 * 24 23 22 46 46 H 1.08997 * 110.35751 * 217.03621 * 24 23 22 47 47 H 1.08995 * 110.51424 * 238.46353 * 25 24 23 48 48 H 1.08996 * 110.51232 * 115.74838 * 25 24 23 49 49 H 1.08996 * 109.91587 * 179.23397 * 28 26 22 50 50 H 1.08999 * 109.98237 * 58.10305 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6619 -0.0005 11 6 1.4807 -4.9870 -0.0012 12 7 2.4327 -6.1005 -0.0006 13 6 1.9836 -7.3712 -0.0015 14 8 0.7905 -7.5930 -0.0024 15 6 2.9548 -8.5070 -0.0014 16 8 4.1479 -8.2852 -0.0010 17 7 2.5057 -9.7778 -0.0019 18 6 3.4578 -10.8912 -0.0024 19 6 2.6929 -12.2162 -0.0034 20 1 2.0586 -12.2625 -0.8886 21 6 3.6979 -13.3794 -0.0426 22 7 2.9385 -14.6154 0.0861 23 6 3.6937 -15.8753 0.0802 24 6 2.6892 -16.8988 0.6765 25 6 1.7070 -16.0472 1.5223 26 6 2.2584 -14.6232 1.4111 27 1 2.9764 -14.4230 2.2064 28 6 1.1957 -13.5345 1.3746 29 8 1.8750 -12.2859 1.1631 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 2.8722 -3.6042 0.8894 34 1 2.8722 -3.6042 -0.8905 35 1 0.8543 -5.0446 -0.8913 36 1 0.8537 -5.0450 0.8886 37 1 3.3864 -5.9232 -0.0002 38 1 1.5521 -9.9551 -0.0062 39 1 4.0844 -10.8331 -0.8924 40 1 4.0845 -10.8337 0.8876 41 1 4.2363 -13.3722 -0.9903 42 1 4.4016 -13.2891 0.7850 43 1 3.9680 -16.1542 -0.9372 44 1 4.5813 -15.7942 0.7076 45 1 2.1542 -17.4138 -0.1214 46 1 3.2104 -17.6168 1.3096 47 1 1.7111 -16.3783 2.5607 48 1 0.7005 -16.1005 1.1074 49 1 0.6577 -13.5088 2.3222 50 1 0.4991 -13.7213 0.5573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804057241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -143.434809 kcal Electronic energy + Delta-G solvation = -28580.566628 eV Core-core repulsion = 24413.270137 eV Total energy + Delta-G solvation = -4167.296491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.79906 -41.25737 -39.69239 -38.15681 -37.19160 -36.06256 -35.17210 -33.92126 -33.03489 -31.44391 -30.60131 -28.99625 -27.18619 -25.74997 -25.44526 -23.93078 -22.79320 -22.36214 -21.88756 -21.49362 -21.04123 -19.57584 -18.52215 -18.01221 -17.82285 -17.24946 -17.10923 -16.72159 -16.47964 -16.40196 -16.39347 -16.18038 -16.06959 -15.45834 -15.05968 -14.92987 -14.68655 -14.51112 -14.27097 -13.90546 -13.76794 -13.57007 -13.44788 -13.44143 -12.90624 -12.78031 -12.55028 -12.53504 -12.40494 -12.36709 -12.16422 -12.07431 -11.69815 -11.56108 -11.50052 -11.46673 -11.21365 -10.79416 -10.67684 -10.54792 -10.39743 -10.27700 -9.54342 -8.18903 -6.29760 0.29932 1.25171 1.42162 1.42766 1.55769 2.09789 2.41062 2.45569 2.63099 2.85512 3.15185 3.39658 3.51111 3.63319 3.78330 3.84775 3.99768 4.08973 4.09443 4.18947 4.19958 4.27091 4.37233 4.50739 4.53298 4.53377 4.57227 4.61978 4.76679 4.80887 4.87295 4.89396 4.92333 4.95384 5.01938 5.07055 5.15742 5.20625 5.23492 5.23707 5.52503 5.71526 5.73392 5.85210 5.86502 6.04118 6.15416 6.23454 6.31130 6.68139 6.87357 6.89985 7.39740 8.93215 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.044018 B = 0.001419 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.945005 B =19733.070005 C =20162.790249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.501 3.499 14 O -0.548 6.548 15 C 0.515 3.485 16 O -0.540 6.540 17 N -0.683 5.683 18 C 0.127 3.873 19 C 0.093 3.907 20 H 0.078 0.922 21 C 0.031 3.969 22 N -0.537 5.537 23 C 0.041 3.959 24 C -0.119 4.119 25 C -0.111 4.111 26 C 0.022 3.978 27 H 0.052 0.948 28 C 0.076 3.924 29 O -0.402 6.402 30 H 0.263 0.737 31 H -0.003 1.003 32 H -0.004 1.004 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.420 0.580 38 H 0.420 0.580 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -38.408 1.038 39.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.338 5.338 13 C 0.282 3.718 14 O -0.426 6.426 15 C 0.296 3.704 16 O -0.418 6.418 17 N -0.336 5.336 18 C 0.004 3.996 19 C 0.034 3.966 20 H 0.096 0.904 21 C -0.098 4.098 22 N -0.263 5.263 23 C -0.086 4.086 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.087 4.087 27 H 0.070 0.930 28 C 0.000 4.000 29 O -0.322 6.322 30 H 0.072 0.928 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.257 0.743 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.128 0.872 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.163 -38.146 0.707 38.819 hybrid contribution 0.650 0.984 0.508 1.284 sum 7.813 -37.162 1.216 37.994 Atomic orbital electron populations 1.70101 1.07810 1.27703 1.51724 1.25967 0.95730 1.03362 0.94781 0.85399 0.79164 0.78824 0.77641 1.18433 1.20538 1.20556 1.21711 0.93724 0.92127 1.50414 0.91766 1.18947 0.94367 0.92603 0.95458 1.21642 0.98635 0.91860 1.02249 1.21484 0.91604 0.84531 1.01997 1.45874 1.12271 1.04609 1.71078 1.20314 0.88491 0.84817 0.78167 1.90755 1.17101 1.85042 1.49704 1.19893 0.87957 0.84579 0.78007 1.90757 1.16495 1.84998 1.49510 1.45600 1.12438 1.04100 1.71448 1.21632 0.91239 0.82568 1.04172 1.22321 0.92206 0.92797 0.89265 0.90411 1.22582 0.95038 0.88962 1.03258 1.63922 1.29991 1.01796 1.30552 1.22915 0.95306 0.88671 1.01726 1.22581 0.96476 0.97061 0.99571 1.22082 0.99913 0.91865 1.01090 1.23165 0.97389 0.97273 0.90826 0.92984 1.22709 0.93186 0.81255 1.02828 1.87883 1.63117 1.36332 1.44827 0.92807 0.98469 0.98531 0.91466 0.91388 0.91663 0.91803 0.74306 0.74278 0.87823 0.90598 0.87718 0.93708 0.89399 0.93975 0.90429 0.90114 0.89917 0.90272 0.87167 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.24 4.97 29.85 0.15 1.38 16 10 C -0.11 -4.11 5.27 30.60 0.16 -3.95 16 11 C 0.13 4.40 5.67 86.38 0.49 4.89 16 12 N -0.69 -20.48 5.55 -464.41 -2.58 -23.05 16 13 C 0.50 15.10 7.89 87.27 0.69 15.79 16 14 O -0.55 -18.98 16.48 -3.25 -0.05 -19.04 16 15 C 0.52 13.43 7.89 87.27 0.69 14.12 16 16 O -0.54 -15.67 16.48 -3.25 -0.05 -15.73 16 17 N -0.68 -13.99 5.43 -464.40 -2.52 -16.51 16 18 C 0.13 1.96 5.34 86.38 0.46 2.42 16 19 C 0.09 1.24 2.95 30.85 0.09 1.33 16 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 21 C 0.03 0.34 5.36 86.80 0.47 0.80 16 22 N -0.54 -6.07 4.86 -864.10 -4.20 -10.27 16 23 C 0.04 0.35 6.74 87.10 0.59 0.94 16 24 C -0.12 -0.75 7.06 32.10 0.23 -0.52 16 25 C -0.11 -0.79 6.66 31.35 0.21 -0.58 16 26 C 0.02 0.23 2.65 44.29 0.12 0.35 16 27 H 0.05 0.66 8.01 -2.39 -0.02 0.64 16 28 C 0.08 0.93 6.65 71.71 0.48 1.41 16 29 O -0.40 -6.67 10.09 -148.98 -1.50 -8.17 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.42 11.18 7.94 -92.71 -0.74 10.44 16 38 H 0.42 8.41 7.81 -92.71 -0.72 7.69 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.04 0.53 8.03 -2.39 -0.02 0.51 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.08 0.54 8.02 -2.39 -0.02 0.52 16 49 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -69.93 406.98 -3.61 -73.54 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.52 Total: 20.87 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.51 Total: 8.69 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -9.01 Total: -106.23 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.61 Total: -42.94 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.93 -3.61 -73.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804057241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.894 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds