Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48504 * 109.47144 * 270.00483 * 3 2 1 5 5 H 1.48505 * 109.47034 * 30.00103 * 3 2 1 6 6 H 1.48490 * 109.47170 * 150.00251 * 3 2 1 7 7 C 1.37879 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47058 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46941 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00191 * 179.97438 * 12 11 10 14 14 O 1.21348 * 119.99535 * 359.97438 * 13 12 11 15 15 C 1.49452 * 120.00145 * 179.97438 * 13 12 11 16 16 O 1.21345 * 119.99675 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00145 * 179.97438 * 15 13 12 18 18 C 1.46502 * 120.00191 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46941 * 180.02562 * 18 17 15 20 20 H 1.08997 * 109.16397 * 59.26312 * 19 18 17 21 21 C 1.53763 * 109.12290 * 178.49772 * 19 18 17 22 22 N 1.45644 * 107.39153 * 66.07478 * 21 19 18 23 23 C 1.46895 * 117.34815 * 179.75281 * 22 21 19 24 24 C 1.55303 * 103.36226 * 197.48283 * 23 22 21 25 25 C 1.55087 * 104.90653 * 24.10944 * 24 23 22 26 26 C 1.48938 * 108.72565 * 62.79868 * 22 21 19 27 27 H 1.09000 * 110.33544 * 52.62646 * 26 22 21 28 28 C 1.52182 * 107.08135 * 292.01792 * 26 22 21 29 29 O 1.42646 * 109.16710 * 299.99800 * 19 18 17 30 30 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46962 * 59.99899 * 9 7 2 32 32 H 1.08995 * 109.46923 * 300.00233 * 9 7 2 33 33 H 1.09001 * 109.46852 * 59.99561 * 10 9 7 34 34 H 1.08999 * 109.46948 * 300.00409 * 10 9 7 35 35 H 1.09000 * 109.47064 * 60.00044 * 11 10 9 36 36 H 1.09001 * 109.46970 * 299.99743 * 11 10 9 37 37 H 0.97004 * 119.99810 * 0.02562 * 12 11 10 38 38 H 0.96999 * 119.99498 * 0.02562 * 17 15 13 39 39 H 1.09001 * 109.46997 * 59.99735 * 18 17 15 40 40 H 1.09004 * 109.46663 * 300.00123 * 18 17 15 41 41 H 1.08994 * 109.87585 * 306.59825 * 21 19 18 42 42 H 1.09003 * 109.87076 * 185.54538 * 21 19 18 43 43 H 1.09000 * 110.64788 * 79.01361 * 23 22 21 44 44 H 1.09007 * 110.64325 * 315.94724 * 23 22 21 45 45 H 1.09003 * 110.35159 * 265.25721 * 24 23 22 46 46 H 1.09004 * 110.44988 * 143.00974 * 24 23 22 47 47 H 1.08995 * 110.51808 * 121.54132 * 25 24 23 48 48 H 1.09006 * 110.51518 * 244.25943 * 25 24 23 49 49 H 1.08999 * 109.91857 * 180.76797 * 28 26 22 50 50 H 1.08998 * 109.91782 * 301.86096 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9829 -7.3714 -0.0009 14 8 0.7899 -7.5930 0.0010 15 6 2.9541 -8.5073 -0.0021 16 8 4.1471 -8.2855 -0.0034 17 7 2.5049 -9.7780 -0.0006 18 6 3.4569 -10.8915 -0.0012 19 6 2.6918 -12.2165 0.0001 20 1 2.0563 -12.2635 -0.8842 21 6 3.6976 -13.3789 -0.0387 22 7 4.4387 -13.3554 1.2149 23 6 5.4646 -14.3881 1.4119 24 6 5.7099 -14.3625 2.9452 25 6 4.4042 -13.7826 3.5485 26 6 3.4879 -13.5905 2.3369 27 1 2.9055 -14.4941 2.1568 28 6 2.5806 -12.3714 2.4170 29 8 1.8755 -12.2848 1.1678 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.8726 -3.6048 0.8877 34 1 2.8712 -3.6040 -0.8922 35 1 0.8525 -5.0447 -0.8905 36 1 0.8545 -5.0450 0.8895 37 1 3.3859 -5.9234 -0.0021 38 1 1.5512 -9.9552 0.0008 39 1 4.0848 -10.8332 0.8878 40 1 4.0823 -10.8343 -0.8922 41 1 4.3824 -13.2486 -0.8765 42 1 3.1661 -14.3255 -0.1372 43 1 6.3764 -14.1318 0.8725 44 1 5.0928 -15.3637 1.0985 45 1 6.5562 -13.7180 3.1829 46 1 5.8852 -15.3710 3.3197 47 1 3.9629 -14.4874 4.2531 48 1 4.5996 -12.8267 4.0347 49 1 1.8714 -12.4894 3.2363 50 1 3.1785 -11.4730 2.5703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804057246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -116.655883 kcal Electronic energy + Delta-G solvation = -29098.668987 eV Core-core repulsion = 24932.533717 eV Total energy + Delta-G solvation = -4166.135270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.10690 -40.38035 -38.49573 -37.56880 -35.73764 -34.84854 -33.46509 -33.20840 -31.21582 -30.81476 -29.86830 -27.42629 -26.48530 -25.09701 -24.12526 -22.75381 -22.22255 -21.46065 -20.73754 -20.40481 -19.87209 -18.31850 -17.30706 -16.99373 -16.37982 -16.33550 -16.24687 -16.06793 -15.84421 -15.39979 -15.16532 -14.81906 -14.51700 -14.43453 -14.25567 -14.07168 -13.68626 -13.56344 -13.28707 -13.14854 -12.62035 -12.29415 -12.18161 -11.93297 -11.86278 -11.76312 -11.69015 -11.66509 -11.59395 -11.10639 -10.90022 -10.86544 -10.73619 -10.59195 -10.21696 -9.87954 -9.73853 -9.42389 -9.33960 -9.11430 -9.00183 -8.93186 -8.36458 -6.01267 -4.04176 1.49299 2.37929 3.14102 3.29597 3.32195 3.35544 3.38509 3.41781 3.73846 3.96647 4.13192 4.20803 4.28534 4.45181 4.50055 4.60362 4.62695 4.65776 4.72604 4.90469 4.97980 5.02456 5.06651 5.15567 5.27764 5.29328 5.34681 5.37564 5.39842 5.59506 5.62541 5.62837 5.65846 5.72335 6.02656 6.11132 6.20422 6.31796 6.50796 6.56824 6.68923 6.72931 6.97519 6.99458 7.47340 7.63534 7.75383 7.79733 7.97247 8.11247 8.38595 9.02312 9.60068 11.09969 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.001588 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.337243 B =17630.253064 C =17911.551863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.692 5.692 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.508 3.492 16 O -0.522 6.522 17 N -0.698 5.698 18 C 0.094 3.906 19 C 0.087 3.913 20 H 0.115 0.885 21 C 0.029 3.971 22 N -0.527 5.527 23 C 0.044 3.956 24 C -0.121 4.121 25 C -0.115 4.115 26 C 0.023 3.977 27 H 0.061 0.939 28 C 0.074 3.926 29 O -0.376 6.376 30 H 0.261 0.739 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.415 0.585 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.164 -34.880 3.478 36.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.344 5.344 13 C 0.280 3.720 14 O -0.402 6.402 15 C 0.288 3.712 16 O -0.398 6.398 17 N -0.353 5.353 18 C -0.029 4.029 19 C 0.028 3.972 20 H 0.132 0.868 21 C -0.100 4.100 22 N -0.252 5.252 23 C -0.083 4.083 24 C -0.160 4.160 25 C -0.153 4.153 26 C -0.085 4.085 27 H 0.079 0.921 28 C -0.003 4.003 29 O -0.294 6.294 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.252 0.748 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.063 -34.246 3.440 35.592 hybrid contribution 0.410 0.083 -0.169 0.451 sum 9.472 -34.163 3.270 35.602 Atomic orbital electron populations 1.69967 1.06046 1.26684 1.50580 1.25027 0.94866 0.99309 0.95254 0.86570 0.79810 0.83378 0.78096 1.20663 1.21218 1.19882 1.21208 0.93061 0.90899 1.50930 0.92569 1.19036 0.93816 0.90790 0.97729 1.21925 0.99867 0.92978 1.01299 1.21835 0.91747 0.84729 1.02511 1.46065 1.12180 1.05001 1.71154 1.20022 0.88482 0.84514 0.79019 1.90762 1.16011 1.84708 1.48759 1.20321 0.88740 0.84397 0.77712 1.90758 1.16250 1.84800 1.48000 1.45658 1.11795 1.04600 1.73209 1.22001 0.92052 0.84620 1.04250 1.22540 0.92541 0.92633 0.89463 0.86756 1.22636 0.96195 0.97790 0.93408 1.63955 1.11275 1.47376 1.02621 1.22845 0.95699 0.92804 0.96985 1.22569 0.98183 1.01224 0.93984 1.22086 0.94950 1.01978 0.96280 1.23153 0.94179 0.98496 0.92655 0.92062 1.22612 0.95044 0.96434 0.86187 1.87976 1.33594 1.94233 1.13610 0.92940 0.96190 0.96171 0.92442 0.92438 0.91114 0.91120 0.75346 0.74774 0.89352 0.90289 0.88946 0.93148 0.89792 0.94023 0.90635 0.91202 0.90917 0.90454 0.88126 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 11 C 0.11 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.69 -10.69 5.55 -60.73 -0.34 -11.03 16 13 C 0.50 7.73 7.89 -11.59 -0.09 7.64 16 14 O -0.53 -9.21 16.48 5.50 0.09 -9.12 16 15 C 0.51 6.95 7.89 -11.59 -0.09 6.86 16 16 O -0.52 -8.10 16.48 5.50 0.09 -8.01 16 17 N -0.70 -7.52 5.44 -60.73 -0.33 -7.85 16 18 C 0.09 0.83 4.82 -4.04 -0.02 0.81 16 19 C 0.09 0.59 3.32 -26.34 -0.09 0.51 16 20 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 21 C 0.03 0.17 5.48 -4.11 -0.02 0.14 16 22 N -0.53 -3.38 4.25 -224.46 -0.95 -4.33 16 23 C 0.04 0.23 6.74 -2.61 -0.02 0.21 16 24 C -0.12 -0.56 7.06 -24.41 -0.17 -0.73 16 25 C -0.11 -0.57 6.66 -25.57 -0.17 -0.74 16 26 C 0.02 0.14 2.64 -66.94 -0.18 -0.03 16 27 H 0.06 0.39 8.02 -51.93 -0.42 -0.02 16 28 C 0.07 0.53 6.28 36.74 0.23 0.76 16 29 O -0.38 -3.15 10.22 -35.23 -0.36 -3.51 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.41 5.81 7.94 -40.82 -0.32 5.49 16 38 H 0.42 4.30 7.81 -40.82 -0.32 3.98 16 39 H 0.09 0.90 6.45 -51.93 -0.33 0.56 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.28 8.04 -51.93 -0.42 -0.14 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.41 8.02 -51.93 -0.42 0.00 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.55 6.90 -51.93 -0.36 0.20 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -32.84 403.18 -9.81 -42.65 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.47 Total: 2.72 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.33 Total: 1.86 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.88 Total: -49.24 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.18 Total: -20.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.84 -9.81 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804057246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.003 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds