Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48504 * 109.47144 * 270.00483 * 3 2 1 5 5 H 1.48505 * 109.47034 * 30.00103 * 3 2 1 6 6 H 1.48490 * 109.47170 * 150.00251 * 3 2 1 7 7 C 1.37879 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47058 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46941 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00191 * 179.97438 * 12 11 10 14 14 O 1.21348 * 119.99535 * 359.97438 * 13 12 11 15 15 C 1.49452 * 120.00145 * 179.97438 * 13 12 11 16 16 O 1.21345 * 119.99675 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00145 * 179.97438 * 15 13 12 18 18 C 1.46502 * 120.00191 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46941 * 180.02562 * 18 17 15 20 20 H 1.08997 * 109.16397 * 59.26312 * 19 18 17 21 21 C 1.53763 * 109.12290 * 178.49772 * 19 18 17 22 22 N 1.45644 * 107.39153 * 66.07478 * 21 19 18 23 23 C 1.46895 * 117.34815 * 179.75281 * 22 21 19 24 24 C 1.55303 * 103.36226 * 197.48283 * 23 22 21 25 25 C 1.55087 * 104.90653 * 24.10944 * 24 23 22 26 26 C 1.48938 * 108.72565 * 62.79868 * 22 21 19 27 27 H 1.09000 * 110.33544 * 52.62646 * 26 22 21 28 28 C 1.52182 * 107.08135 * 292.01792 * 26 22 21 29 29 O 1.42646 * 109.16710 * 299.99800 * 19 18 17 30 30 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46962 * 59.99899 * 9 7 2 32 32 H 1.08995 * 109.46923 * 300.00233 * 9 7 2 33 33 H 1.09001 * 109.46852 * 59.99561 * 10 9 7 34 34 H 1.08999 * 109.46948 * 300.00409 * 10 9 7 35 35 H 1.09000 * 109.47064 * 60.00044 * 11 10 9 36 36 H 1.09001 * 109.46970 * 299.99743 * 11 10 9 37 37 H 0.97004 * 119.99810 * 0.02562 * 12 11 10 38 38 H 0.96999 * 119.99498 * 0.02562 * 17 15 13 39 39 H 1.09001 * 109.46997 * 59.99735 * 18 17 15 40 40 H 1.09004 * 109.46663 * 300.00123 * 18 17 15 41 41 H 1.08994 * 109.87585 * 306.59825 * 21 19 18 42 42 H 1.09003 * 109.87076 * 185.54538 * 21 19 18 43 43 H 1.09000 * 110.64788 * 79.01361 * 23 22 21 44 44 H 1.09007 * 110.64325 * 315.94724 * 23 22 21 45 45 H 1.09003 * 110.35159 * 265.25721 * 24 23 22 46 46 H 1.09004 * 110.44988 * 143.00974 * 24 23 22 47 47 H 1.08995 * 110.51808 * 121.54132 * 25 24 23 48 48 H 1.09006 * 110.51518 * 244.25943 * 25 24 23 49 49 H 1.08999 * 109.91857 * 180.76797 * 28 26 22 50 50 H 1.08998 * 109.91782 * 301.86096 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9829 -7.3714 -0.0009 14 8 0.7899 -7.5930 0.0010 15 6 2.9541 -8.5073 -0.0021 16 8 4.1471 -8.2855 -0.0034 17 7 2.5049 -9.7780 -0.0006 18 6 3.4569 -10.8915 -0.0012 19 6 2.6918 -12.2165 0.0001 20 1 2.0563 -12.2635 -0.8842 21 6 3.6976 -13.3789 -0.0387 22 7 4.4387 -13.3554 1.2149 23 6 5.4646 -14.3881 1.4119 24 6 5.7099 -14.3625 2.9452 25 6 4.4042 -13.7826 3.5485 26 6 3.4879 -13.5905 2.3369 27 1 2.9055 -14.4941 2.1568 28 6 2.5806 -12.3714 2.4170 29 8 1.8755 -12.2848 1.1678 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.8726 -3.6048 0.8877 34 1 2.8712 -3.6040 -0.8922 35 1 0.8525 -5.0447 -0.8905 36 1 0.8545 -5.0450 0.8895 37 1 3.3859 -5.9234 -0.0021 38 1 1.5512 -9.9552 0.0008 39 1 4.0848 -10.8332 0.8878 40 1 4.0823 -10.8343 -0.8922 41 1 4.3824 -13.2486 -0.8765 42 1 3.1661 -14.3255 -0.1372 43 1 6.3764 -14.1318 0.8725 44 1 5.0928 -15.3637 1.0985 45 1 6.5562 -13.7180 3.1829 46 1 5.8852 -15.3710 3.3197 47 1 3.9629 -14.4874 4.2531 48 1 4.5996 -12.8267 4.0347 49 1 1.8714 -12.4894 3.2363 50 1 3.1785 -11.4730 2.5703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804057246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -141.627920 kcal Electronic energy + Delta-G solvation = -29099.751856 eV Core-core repulsion = 24932.533717 eV Total energy + Delta-G solvation = -4167.218139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87172 -41.31130 -39.64959 -38.16801 -37.18358 -35.88146 -35.14018 -33.92214 -33.03417 -31.29045 -30.49329 -29.00017 -27.46036 -25.85149 -25.35627 -23.90468 -23.08111 -22.36401 -21.85566 -21.37565 -20.73596 -19.45586 -18.51405 -17.98825 -17.88286 -17.17590 -17.11220 -16.75775 -16.62298 -16.48967 -16.25232 -16.16222 -15.99630 -15.33182 -15.10926 -14.87708 -14.60176 -14.51487 -14.25883 -13.92709 -13.77518 -13.57738 -13.53346 -13.32473 -12.89802 -12.75470 -12.64737 -12.54493 -12.39924 -12.34065 -12.11977 -12.06082 -11.69587 -11.55619 -11.49213 -11.39561 -11.23244 -10.84884 -10.64222 -10.54152 -10.37731 -10.27178 -9.46316 -8.18834 -6.29772 0.30962 1.27502 1.42606 1.43461 1.54620 2.10762 2.41851 2.51477 2.73454 2.93057 3.15006 3.40962 3.54791 3.60419 3.69904 3.81218 4.07478 4.08796 4.13360 4.18551 4.20202 4.27812 4.42320 4.52144 4.52954 4.55090 4.60062 4.63525 4.78070 4.87055 4.87703 4.91963 4.94136 4.97889 5.02452 5.10844 5.15390 5.20566 5.23402 5.24652 5.52082 5.71259 5.77070 5.84946 5.88379 6.08525 6.13753 6.23460 6.32863 6.70231 6.87010 6.91153 7.39514 8.92984 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.001588 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.337243 B =17630.253064 C =17911.551863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.501 3.499 14 O -0.548 6.548 15 C 0.513 3.487 16 O -0.542 6.542 17 N -0.683 5.683 18 C 0.097 3.903 19 C 0.090 3.910 20 H 0.130 0.870 21 C 0.032 3.968 22 N -0.541 5.541 23 C 0.044 3.956 24 C -0.120 4.120 25 C -0.114 4.114 26 C 0.027 3.973 27 H 0.061 0.939 28 C 0.072 3.928 29 O -0.391 6.391 30 H 0.263 0.737 31 H -0.003 1.003 32 H -0.003 1.003 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.419 0.581 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.109 0.891 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.652 -36.046 3.368 37.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.282 3.718 14 O -0.426 6.426 15 C 0.294 3.706 16 O -0.419 6.419 17 N -0.336 5.336 18 C -0.026 4.026 19 C 0.031 3.969 20 H 0.148 0.852 21 C -0.097 4.097 22 N -0.267 5.267 23 C -0.084 4.084 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.081 4.081 27 H 0.079 0.921 28 C -0.005 4.005 29 O -0.309 6.309 30 H 0.072 0.928 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.256 0.744 38 H 0.257 0.743 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.127 0.873 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.570 -35.454 3.330 37.145 hybrid contribution -0.088 0.386 -0.126 0.415 sum 10.482 -35.068 3.204 36.741 Atomic orbital electron populations 1.70102 1.07792 1.27759 1.51606 1.25982 0.95762 1.03394 0.94783 0.85435 0.78652 0.78443 0.78428 1.19850 1.20932 1.18685 1.21683 0.93717 0.92138 1.50566 0.91777 1.18941 0.94364 0.92587 0.95462 1.21640 0.98631 0.91878 1.02220 1.21481 0.91597 0.84527 1.01989 1.45881 1.12243 1.04645 1.71105 1.20340 0.88508 0.84817 0.78145 1.90752 1.17060 1.85048 1.49707 1.19923 0.87919 0.84693 0.78106 1.90756 1.16639 1.85027 1.49518 1.45674 1.12424 1.04136 1.71346 1.22118 0.91818 0.84741 1.03895 1.22638 0.92851 0.91832 0.89557 0.85223 1.22626 0.96120 0.97353 0.93591 1.63963 1.11657 1.48139 1.02927 1.22881 0.95398 0.92723 0.97364 1.22577 0.97731 1.01835 0.93663 1.22100 0.95037 1.02014 0.96076 1.23098 0.94118 0.97755 0.93177 0.92132 1.22660 0.95300 0.96375 0.86138 1.87957 1.34433 1.94259 1.14265 0.92806 0.98489 0.98502 0.91496 0.91421 0.91686 0.91780 0.74364 0.74346 0.90592 0.89637 0.87822 0.92556 0.89665 0.93459 0.91043 0.89946 0.89741 0.91150 0.87273 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.11 -4.12 5.27 30.59 0.16 -3.96 16 11 C 0.13 4.43 5.67 86.38 0.49 4.92 16 12 N -0.69 -20.67 5.55 -464.41 -2.58 -23.25 16 13 C 0.50 15.19 7.89 87.27 0.69 15.88 16 14 O -0.55 -18.98 16.48 -3.24 -0.05 -19.03 16 15 C 0.51 13.62 7.89 87.27 0.69 14.31 16 16 O -0.54 -16.29 16.48 -3.23 -0.05 -16.35 16 17 N -0.68 -14.05 5.44 -464.41 -2.52 -16.57 16 18 C 0.10 1.59 4.82 86.38 0.42 2.01 16 19 C 0.09 1.09 3.32 30.85 0.10 1.19 16 20 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 21 C 0.03 0.31 5.48 86.80 0.48 0.79 16 22 N -0.54 -6.24 4.25 -864.07 -3.67 -9.91 16 23 C 0.04 0.39 6.74 87.10 0.59 0.97 16 24 C -0.12 -0.94 7.06 32.10 0.23 -0.71 16 25 C -0.11 -1.01 6.66 31.35 0.21 -0.80 16 26 C 0.03 0.30 2.64 44.29 0.12 0.42 16 27 H 0.06 0.69 8.02 -2.39 -0.02 0.67 16 28 C 0.07 0.98 6.28 71.71 0.45 1.43 16 29 O -0.39 -6.14 10.22 -148.98 -1.52 -7.67 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.42 11.35 7.94 -92.71 -0.74 10.61 16 38 H 0.42 8.25 7.81 -92.71 -0.72 7.53 16 39 H 0.08 1.50 6.45 -2.39 -0.02 1.48 16 40 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.50 8.04 -2.39 -0.02 0.48 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 47 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.07 0.72 8.02 -2.38 -0.02 0.70 16 49 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.05 0.87 6.90 -2.39 -0.02 0.85 16 Total: -1.00 -69.81 403.18 -3.15 -72.96 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.51 Total: 22.10 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.46 Total: 7.98 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -8.49 Total: -106.11 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.63 Total: -43.04 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -69.81 -3.15 -72.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804057246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.666 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds