Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 N 1.46493 * 109.42022 * 178.67345 * 12 11 10 14 14 C 1.34774 * 120.00256 * 275.12556 * 13 12 11 15 15 O 1.21346 * 119.99662 * 0.02562 * 14 13 12 16 16 C 1.49446 * 120.00148 * 180.02562 * 14 13 12 17 17 O 1.21353 * 120.00071 * 0.02562 * 16 14 13 18 18 N 1.34782 * 120.00119 * 180.02562 * 16 14 13 19 19 O 1.41596 * 119.99735 * 179.97438 * 18 16 14 20 20 C 1.42905 * 113.99621 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47426 * 275.00253 * 20 19 18 22 22 C 1.52997 * 109.47186 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47042 * 59.99805 * 22 21 20 24 24 C 1.52997 * 109.47289 * 300.00131 * 23 22 21 25 25 C 1.52997 * 109.47186 * 59.99957 * 24 23 22 26 26 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 27 27 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 28 28 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 30 30 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 31 31 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 32 32 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 33 33 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 34 34 H 0.97003 * 120.00082 * 95.12907 * 13 12 11 35 35 H 0.97003 * 119.99691 * 359.97438 * 18 16 14 36 36 H 1.09003 * 109.46995 * 35.00120 * 20 19 18 37 37 H 1.09003 * 109.46925 * 299.99910 * 21 20 19 38 38 H 1.09004 * 109.47350 * 59.99926 * 21 20 19 39 39 H 1.09004 * 109.47567 * 300.00061 * 22 21 20 40 40 H 1.08998 * 109.47309 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.47175 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.46930 * 60.00359 * 23 22 21 43 43 H 1.09003 * 109.46925 * 300.00049 * 24 23 22 44 44 H 1.08997 * 109.47198 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47309 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.46965 * 59.99814 * 25 24 23 47 47 H 1.08992 * 109.49619 * 301.41603 * 26 12 11 48 48 H 1.08999 * 109.52313 * 181.33616 * 26 12 11 49 49 H 1.09000 * 109.58664 * 353.42162 * 27 9 7 50 50 H 1.08996 * 109.58580 * 113.70091 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 7 1.0413 -5.6472 2.9312 14 6 0.8382 -6.9651 2.7359 15 8 0.4667 -7.3678 1.6531 16 6 1.0705 -7.9306 3.8527 17 8 1.4416 -7.5279 4.9356 18 7 0.8679 -9.2487 3.6572 19 8 1.0885 -10.1635 4.7152 20 6 0.8344 -11.5262 4.3678 21 6 -0.6554 -11.8276 4.5417 22 6 -0.9273 -13.2867 4.1704 23 6 -0.1112 -14.2055 5.0819 24 6 1.3786 -13.9041 4.9080 25 6 1.6505 -12.4449 5.2793 26 6 0.4984 -3.3190 2.4146 27 6 0.2263 -2.3402 1.2680 28 1 -0.4849 0.8400 0.0004 29 1 1.0402 -4.0608 -0.8485 30 1 2.7330 -3.5129 -0.7671 31 1 2.3088 -5.6065 0.5685 32 1 2.9057 -4.2544 1.5613 33 1 -0.0271 -5.0411 1.2314 34 1 1.3386 -5.3254 3.7967 35 1 0.5709 -9.5706 2.7916 36 1 1.1207 -11.6959 3.3299 37 1 -0.9417 -11.6578 5.5797 38 1 -1.2369 -11.1727 3.8927 39 1 -0.6409 -13.4570 3.1325 40 1 -1.9886 -13.5016 4.2947 41 1 -0.3052 -15.2451 4.8176 42 1 -0.3977 -14.0353 6.1197 43 1 1.6650 -14.0743 3.8701 44 1 1.9600 -14.5589 5.5570 45 1 2.7118 -12.2300 5.1550 46 1 1.3640 -12.2747 6.3171 47 1 1.3481 -2.9671 2.9994 48 1 -0.3818 -3.3836 3.0543 49 1 0.0992 -1.3345 1.6685 50 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805057442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -62.398191 kcal Electronic energy + Delta-G solvation = -29473.946836 eV Core-core repulsion = 25310.164356 eV Total energy + Delta-G solvation = -4163.782480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.65365 -39.58995 -38.56582 -37.36490 -36.69178 -34.65491 -32.61843 -32.15516 -31.33778 -30.23785 -29.80516 -29.47934 -25.77294 -24.20651 -23.18058 -22.89812 -22.32062 -21.82433 -20.69969 -20.18354 -19.57379 -18.82066 -17.87968 -16.84964 -16.62911 -16.20828 -15.95446 -15.50216 -15.13288 -14.87247 -14.76144 -14.48958 -14.28086 -14.01607 -13.70879 -13.58388 -13.45679 -13.42510 -13.02583 -12.77974 -12.67902 -12.45285 -12.22886 -11.79624 -11.68832 -11.59553 -11.51357 -11.16296 -11.14826 -10.96674 -10.89146 -10.73163 -10.62104 -10.55386 -10.34999 -10.09682 -9.90317 -9.74471 -9.52426 -9.27075 -8.93618 -8.48536 -6.71906 -5.81873 -3.24336 1.25958 1.35260 3.14144 3.16356 3.38124 3.43883 3.45129 3.91920 4.11253 4.13669 4.34125 4.44632 4.48062 4.57792 4.63860 4.75434 4.87898 4.93144 5.05087 5.25131 5.28358 5.35126 5.42970 5.43758 5.48572 5.49273 5.54812 5.59633 5.66749 5.72949 5.76370 5.84706 6.00126 6.09508 6.23520 6.37350 6.42711 6.46113 6.51154 6.59441 6.73000 6.78044 6.93476 7.27438 7.33276 7.59156 7.73017 7.77662 7.96427 8.42171 9.18173 9.81111 10.37656 11.27131 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.038698 B = 0.001743 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.382221 B =16056.596450 C =16135.816708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.148 3.852 11 C -0.141 4.141 12 C 0.148 3.852 13 N -0.684 5.684 14 C 0.518 3.482 15 O -0.522 6.522 16 C 0.518 3.482 17 O -0.503 6.503 18 N -0.573 5.573 19 O -0.133 6.133 20 C 0.060 3.940 21 C -0.145 4.145 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.148 4.148 27 C 0.174 3.826 28 H 0.255 0.745 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.410 0.590 35 H 0.419 0.581 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.093 0.907 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -27.161 9.731 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.181 4.181 12 C 0.046 3.954 13 N -0.335 5.335 14 C 0.297 3.703 15 O -0.399 6.399 16 C 0.299 3.701 17 O -0.375 6.375 18 N -0.277 5.277 19 O -0.137 6.137 20 C 0.002 3.998 21 C -0.183 4.183 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.188 4.188 27 C 0.048 3.952 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.246 0.754 35 H 0.261 0.739 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.477 -26.912 9.910 28.683 hybrid contribution 0.327 0.528 0.001 0.621 sum -0.151 -26.384 9.911 28.185 Atomic orbital electron populations 1.70007 1.05255 1.25723 1.53741 1.25054 0.95299 0.98459 1.00741 0.86357 0.78911 0.83269 0.78153 1.20866 1.21632 1.21015 1.19143 0.92586 0.84740 1.41905 0.91643 1.44082 1.35812 1.01659 1.49921 1.20866 0.98070 0.86497 0.92474 1.22479 0.96900 0.99843 0.98924 1.21370 0.99074 0.88089 0.86852 1.46203 1.65175 1.05019 1.17140 1.19496 0.79823 0.83839 0.87155 1.90778 1.45628 1.78098 1.25372 1.20450 0.79084 0.81116 0.89467 1.90786 1.43816 1.77424 1.25517 1.47198 1.69367 1.01899 1.09190 1.90623 1.89639 1.13785 1.19619 1.22765 0.95907 0.80685 1.00453 1.22119 0.95526 0.97277 1.03360 1.21507 1.00410 0.93788 0.99829 1.21604 0.94832 0.99452 1.00300 1.21509 0.96701 0.94878 1.02179 1.21549 1.00039 0.93442 0.99874 1.22583 1.01014 0.94145 1.01064 1.20761 0.88963 0.97961 0.87553 0.93502 0.96051 0.92369 0.92503 0.91922 0.89364 0.75374 0.73866 0.90293 0.90662 0.91286 0.91675 0.91302 0.91578 0.91624 0.91555 0.90917 0.90626 0.90511 0.91766 0.92359 0.88847 0.95904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.20 55.49 0.62 -25.04 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.41 2.99 -172.32 -0.52 -14.93 16 10 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 11 C -0.14 -2.47 5.68 -26.45 -0.15 -2.62 16 12 C 0.15 2.48 2.42 -67.73 -0.16 2.32 16 13 N -0.68 -9.89 5.07 -54.04 -0.27 -10.16 16 14 C 0.52 7.49 7.85 -11.59 -0.09 7.40 16 15 O -0.52 -8.36 16.14 5.50 0.09 -8.27 16 16 C 0.52 7.17 8.04 -11.58 -0.09 7.08 16 17 O -0.50 -8.24 16.88 -12.69 -0.21 -8.45 16 18 N -0.57 -6.52 6.37 30.91 0.20 -6.33 16 19 O -0.13 -1.50 10.75 -29.65 -0.32 -1.82 16 20 C 0.06 0.45 2.74 -26.73 -0.07 0.37 16 21 C -0.14 -0.96 5.57 -26.73 -0.15 -1.11 16 22 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 23 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 24 C -0.11 -0.52 5.92 -26.73 -0.16 -0.68 16 25 C -0.11 -0.69 5.57 -26.73 -0.15 -0.83 16 26 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 27 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 34 H 0.41 5.44 8.07 -40.82 -0.33 5.11 16 35 H 0.42 3.87 7.90 -40.82 -0.32 3.55 16 36 H 0.08 0.50 7.94 -51.93 -0.41 0.09 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 50 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 399.76 15.07 6.02 6.02 Total: -1.00 -31.34 399.76 -9.68 -41.03 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.50 Total: 3.91 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.77 Total: 7.70 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.03 Total: -56.45 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.44 Total: -18.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.34 -9.68 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805057442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.370 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds